Wall clock time and date at job start Tue Mar 31 2020 19:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46967 * 269.03984 * 3 2 1 5 5 C 1.37090 * 120.00000 * 263.92742 * 4 3 2 6 6 H 1.08004 * 120.00214 * 199.75863 * 5 4 3 7 7 C 1.38949 * 120.00124 * 19.75713 * 5 4 3 8 8 N 1.31410 * 120.00103 * 21.75170 * 7 5 4 9 9 Si 1.86803 * 120.00012 * 201.74445 * 7 5 4 10 10 H 1.48499 * 109.47305 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46904 * 120.00413 * 9 7 5 12 12 H 1.48499 * 109.46988 * 240.00096 * 9 7 5 13 13 C 1.34781 * 119.99660 * 83.92845 * 4 3 2 14 14 O 1.21295 * 119.99717 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00188 * 359.97438 * 13 4 3 16 16 C 1.53005 * 109.46998 * 179.97438 * 15 13 4 17 17 N 1.46496 * 109.47041 * 180.02562 * 16 15 13 18 18 C 1.38049 * 126.35313 * 90.02566 * 17 16 15 19 19 C 1.38834 * 134.13572 * 359.69129 * 18 17 16 20 20 C 1.37857 * 119.69195 * 179.88276 * 19 18 17 21 21 C 1.38781 * 120.44412 * 0.43951 * 20 19 18 22 22 C 1.36595 * 120.67231 * 359.77678 * 21 20 19 23 23 C 1.39736 * 119.88854 * 0.02562 * 22 21 20 24 24 N 1.35785 * 133.60689 * 179.97438 * 23 22 21 25 25 C 1.30108 * 109.64694 * 180.02562 * 24 23 22 26 26 C 1.50699 * 124.95205 * 180.02562 * 25 24 23 27 27 C 1.53004 * 117.49963 * 8.59773 * 26 25 24 28 28 C 1.53005 * 60.00037 * 252.51084 * 27 26 25 29 29 H 4.40643 * 5.51350 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.46671 * 149.04205 * 3 2 1 31 31 H 1.09004 * 109.46920 * 29.04115 * 3 2 1 32 32 H 0.96997 * 120.00438 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.46822 * 59.99857 * 15 13 4 34 34 H 1.08993 * 109.47080 * 299.99826 * 15 13 4 35 35 H 1.08998 * 109.46649 * 60.00101 * 16 15 13 36 36 H 1.09000 * 109.46983 * 300.00207 * 16 15 13 37 37 H 1.08003 * 120.15719 * 0.31690 * 19 18 17 38 38 H 1.07994 * 119.77991 * 180.22079 * 20 19 18 39 39 H 1.07998 * 119.66034 * 179.80073 * 21 20 19 40 40 H 1.08006 * 120.05801 * 179.97438 * 22 21 20 41 41 H 1.09000 * 115.55250 * 154.29874 * 26 25 24 42 42 H 1.09005 * 117.49707 * 359.97438 * 27 26 25 43 43 H 1.08998 * 117.49969 * 145.02153 * 27 26 25 44 44 H 1.09001 * 117.49853 * 252.51125 * 28 27 26 45 45 H 1.08996 * 117.51786 * 107.47601 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1343 0.0240 1.3810 5 6 3.4807 1.2147 1.9656 6 1 4.1240 1.2235 2.8331 7 6 3.0042 2.4103 1.4419 8 7 1.9231 2.4159 0.6948 9 14 3.9002 4.0098 1.8001 10 1 5.0801 3.7347 2.6588 11 1 4.3492 4.6221 0.5240 12 1 2.9838 4.9441 2.5019 13 6 3.2431 -1.1252 2.0769 14 8 3.6478 -1.1059 3.2201 15 6 2.8618 -2.4340 1.4345 16 6 3.0784 -3.5738 2.4318 17 7 2.7084 -4.8462 1.8072 18 6 3.5441 -5.6802 1.0917 19 6 4.8845 -5.6301 0.7336 20 6 5.4327 -6.6565 -0.0055 21 6 4.6516 -7.7334 -0.4009 22 6 3.3300 -7.7974 -0.0615 23 6 2.7537 -6.7705 0.6908 24 7 1.5033 -6.5504 1.1721 25 6 1.4773 -5.4247 1.8240 26 6 0.2611 -4.8471 2.5010 27 6 -0.9845 -5.7310 2.5903 28 6 -0.9569 -4.5432 1.6263 29 1 -1.0500 -0.0002 0.0000 30 1 3.0089 0.8821 -0.5286 31 1 3.0098 -0.8977 -0.4989 32 1 1.5907 3.2504 0.3290 33 1 3.4813 -2.6001 0.5531 34 1 1.8127 -2.4024 1.1405 35 1 2.4593 -3.4078 3.3134 36 1 4.1277 -3.6052 2.7254 37 1 5.4968 -4.7943 1.0387 38 1 6.4761 -6.6208 -0.2818 39 1 5.0933 -8.5291 -0.9824 40 1 2.7312 -8.6399 -0.3748 41 1 0.4622 -4.1746 3.3349 42 1 -0.9245 -6.7303 2.1590 43 1 -1.6031 -5.6403 3.4832 44 1 -1.5573 -3.6710 1.8849 45 1 -0.8784 -4.7608 0.5611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490960504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:11 Heat of formation + Delta-G solvation = 118.107220 kcal Electronic energy + Delta-G solvation = -28642.804918 eV Core-core repulsion = 24821.470139 eV Total energy + Delta-G solvation = -3821.334780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.24388 -40.63906 -38.80629 -37.50787 -37.18208 -35.77406 -34.07935 -33.06113 -32.27633 -30.65917 -30.21658 -28.30500 -27.02314 -25.52941 -25.10439 -23.37806 -22.99097 -22.31240 -20.92763 -20.42261 -19.71203 -18.67348 -18.51281 -18.27575 -17.44073 -16.82795 -16.74416 -16.49486 -16.33742 -15.92332 -15.73433 -15.18322 -15.09377 -14.96150 -14.71946 -14.41394 -14.06526 -13.93652 -13.59177 -13.50495 -13.11115 -12.92471 -12.83717 -12.77221 -12.55785 -12.45713 -12.35730 -12.28934 -12.14567 -11.53484 -11.47103 -11.37509 -11.20317 -11.11698 -10.95571 -10.69561 -10.41492 -9.86321 -9.23527 -9.02900 -8.34565 -5.96945 -0.01926 0.57514 1.33136 1.41958 1.47699 1.56098 1.65969 1.82828 2.10223 2.31011 2.36797 2.84900 2.97970 3.01230 3.04968 3.14581 3.42498 3.58377 3.73721 3.82852 3.85083 3.96415 4.00779 4.06581 4.11080 4.20008 4.29229 4.39181 4.48280 4.51737 4.62726 4.72223 4.76114 4.77170 4.83256 4.88465 4.93781 5.08625 5.23431 5.27652 5.39381 5.45792 5.52560 5.59600 5.60896 5.98792 6.01693 6.09416 6.38277 6.86970 7.09604 7.12923 7.36067 7.90613 8.63640 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.003362 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.831711 B = 8327.067002 C = 9431.310922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.158 4.158 3 C 0.235 3.765 4 N -0.445 5.445 5 C -0.354 4.354 6 H 0.078 0.922 7 C 0.007 3.993 8 N -0.867 5.867 9 Si 0.981 3.019 10 H -0.273 1.273 11 H -0.266 1.266 12 H -0.281 1.281 13 C 0.448 3.552 14 O -0.622 6.622 15 C -0.125 4.125 16 C 0.143 3.857 17 N -0.484 5.484 18 C 0.025 3.975 19 C -0.123 4.123 20 C -0.099 4.099 21 C -0.120 4.120 22 C -0.082 4.082 23 C 0.017 3.983 24 N -0.517 5.517 25 C 0.311 3.689 26 C -0.123 4.123 27 C -0.130 4.130 28 C -0.147 4.147 29 H 0.233 0.767 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.272 0.728 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.138 0.862 41 H 0.128 0.872 42 H 0.100 0.900 43 H 0.126 0.874 44 H 0.119 0.881 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.764 -15.513 -4.454 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.160 4.160 3 C 0.113 3.887 4 N -0.162 5.162 5 C -0.481 4.481 6 H 0.096 0.904 7 C -0.197 4.197 8 N -0.504 5.504 9 Si 0.805 3.195 10 H -0.198 1.198 11 H -0.191 1.191 12 H -0.207 1.207 13 C 0.237 3.763 14 O -0.510 6.510 15 C -0.166 4.166 16 C 0.020 3.980 17 N -0.173 5.173 18 C -0.084 4.084 19 C -0.144 4.144 20 C -0.119 4.119 21 C -0.140 4.140 22 C -0.101 4.101 23 C -0.101 4.101 24 N -0.237 5.237 25 C 0.047 3.953 26 C -0.143 4.143 27 C -0.167 4.167 28 C -0.185 4.185 29 H 0.250 0.750 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.145 0.855 38 H 0.178 0.822 39 H 0.180 0.820 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.119 0.881 43 H 0.144 0.856 44 H 0.137 0.863 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.265 -15.770 -4.087 16.340 hybrid contribution 0.749 1.916 0.445 2.105 sum -0.515 -13.854 -3.642 14.334 Atomic orbital electron populations 1.25116 0.96291 1.04299 0.99849 1.23328 0.94888 0.97378 1.00383 1.18233 0.84880 1.01931 0.83703 1.43844 1.55479 1.05761 1.11141 1.19585 1.29751 0.83241 1.15520 0.90430 1.25958 0.95193 1.01753 0.96843 1.70174 1.17988 1.28699 1.33508 0.85076 0.78364 0.77644 0.78430 1.19755 1.19136 1.20686 1.20447 0.83650 0.86021 0.86173 1.90505 1.53030 1.87681 1.19789 1.21678 1.03689 0.91620 0.99586 1.21330 1.03208 0.78510 0.94940 1.45349 1.08858 1.18730 1.44337 1.19281 0.94808 0.93629 1.00646 1.20314 0.90632 1.01507 1.01947 1.21292 1.01275 0.92565 0.96719 1.21029 0.92620 0.99527 1.00853 1.20275 0.95833 0.96763 0.97240 1.19521 0.89976 0.97074 1.03516 1.70278 1.20852 1.15713 1.16887 1.22892 0.86307 0.89521 0.96626 1.20489 0.84891 1.06095 1.02826 1.23050 0.95519 0.95989 1.02176 1.23069 0.97036 1.01068 0.97325 0.75047 0.89170 0.89125 0.91786 0.88672 0.89208 0.88541 0.88775 0.85511 0.82249 0.82026 0.84418 0.85430 0.88137 0.85605 0.86265 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.00 19.25 74.32 1.43 -7.57 16 2 C -0.16 -6.70 10.75 31.13 0.33 -6.36 16 3 C 0.24 9.99 4.91 84.58 0.42 10.40 16 4 N -0.44 -21.72 2.60 -645.40 -1.68 -23.39 16 5 C -0.35 -19.14 9.28 84.04 0.78 -18.36 16 6 H 0.08 4.52 7.42 -2.91 -0.02 4.50 16 7 C 0.01 0.35 4.83 84.93 0.41 0.76 16 8 N -0.87 -43.78 9.59 21.66 0.21 -43.58 16 9 Si 0.98 40.68 29.61 68.60 2.03 42.71 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 12 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 13 C 0.45 20.62 7.56 87.66 0.66 21.29 16 14 O -0.62 -32.81 15.65 -3.08 -0.05 -32.86 16 15 C -0.12 -4.38 4.63 29.85 0.14 -4.24 16 16 C 0.14 4.59 5.22 86.38 0.45 5.04 16 17 N -0.48 -15.13 2.80 -505.60 -1.42 -16.54 16 18 C 0.02 0.76 6.87 38.86 0.27 1.02 16 19 C -0.12 -3.13 10.05 22.32 0.22 -2.91 16 20 C -0.10 -1.93 10.03 22.31 0.22 -1.71 16 21 C -0.12 -2.24 9.96 22.02 0.22 -2.02 16 22 C -0.08 -1.96 10.05 22.25 0.22 -1.74 16 23 C 0.02 0.53 7.23 39.45 0.29 0.82 16 24 N -0.52 -16.77 10.76 -179.97 -1.94 -18.71 16 25 C 0.31 9.57 7.42 137.92 1.02 10.59 16 26 C -0.12 -3.10 5.89 -11.54 -0.07 -3.17 16 27 C -0.13 -2.60 10.12 30.60 0.31 -2.29 16 28 C -0.15 -3.19 10.23 30.60 0.31 -2.87 16 29 H 0.23 6.76 7.80 -4.42 -0.03 6.73 16 30 H 0.09 4.08 6.60 -2.39 -0.02 4.07 16 31 H 0.09 3.20 6.70 -2.39 -0.02 3.19 16 32 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 33 H 0.10 3.07 7.42 -2.38 -0.02 3.06 16 34 H 0.09 3.16 7.49 -2.39 -0.02 3.14 16 35 H 0.10 3.14 7.12 -2.39 -0.02 3.12 16 36 H 0.09 3.05 8.10 -2.39 -0.02 3.03 16 37 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 41 H 0.13 3.10 7.29 -2.39 -0.02 3.09 16 42 H 0.10 2.21 7.85 -2.38 -0.02 2.19 16 43 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -68.74 385.38 5.81 -62.93 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 1.00 Total: 32.75 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 7.64 Total: -3.31 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -4.82 Total: -102.22 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.05 Total: -32.86 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -68.74 5.81 -62.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490960504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.037 kcal (2) G-P(sol) polarization free energy of solvation -68.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds