Wall clock time and date at job start Tue Mar 31 2020 19:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46822 * 146.30146 * 3 2 1 5 5 C 1.36943 * 119.99635 * 269.99603 * 4 3 2 6 6 H 1.07996 * 120.00045 * 189.77077 * 5 4 3 7 7 C 1.38808 * 119.99864 * 9.76797 * 5 4 3 8 8 N 1.31624 * 120.00138 * 27.44636 * 7 5 4 9 9 Si 1.86808 * 119.99895 * 207.44620 * 7 5 4 10 10 H 1.48491 * 109.47027 * 60.00176 * 9 7 5 11 11 H 1.48497 * 109.47012 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.46906 * 300.00123 * 9 7 5 13 13 C 1.46499 * 120.00201 * 90.00076 * 4 3 2 14 14 C 1.50704 * 109.46698 * 265.05061 * 13 4 3 15 15 O 1.21275 * 120.00484 * 0.02562 * 14 13 4 16 16 N 1.34774 * 119.99798 * 180.02562 * 14 13 4 17 17 C 1.46496 * 120.00002 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47206 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47514 * 179.97438 * 18 17 16 20 20 C 1.36107 * 120.12825 * 265.00732 * 19 18 17 21 21 C 1.39311 * 121.06420 * 179.97438 * 20 19 18 22 22 C 1.36169 * 120.87520 * 359.97438 * 21 20 19 23 23 C 1.40389 * 119.61119 * 0.02562 * 22 21 20 24 24 C 1.40782 * 121.39042 * 180.02562 * 23 22 21 25 25 C 1.36574 * 118.15038 * 179.09200 * 24 23 22 26 26 C 1.39342 * 119.94038 * 0.88097 * 25 24 23 27 27 N 1.31079 * 121.74674 * 359.39341 * 26 25 24 28 28 C 1.33687 * 121.32690 * 0.02562 * 27 26 25 29 29 H 4.40642 * 5.51359 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.47402 * 26.29792 * 3 2 1 31 31 H 1.09004 * 109.47034 * 266.29387 * 3 2 1 32 32 H 0.96996 * 119.99551 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.47164 * 145.05376 * 13 4 3 34 34 H 1.08991 * 109.47468 * 25.04890 * 13 4 3 35 35 H 0.97004 * 120.00159 * 0.02562 * 16 14 13 36 36 H 1.08996 * 109.47599 * 59.99956 * 17 16 14 37 37 H 1.08995 * 109.47289 * 299.99655 * 17 16 14 38 38 H 1.09006 * 109.47047 * 60.00080 * 18 17 16 39 39 H 1.09004 * 109.47148 * 300.00138 * 18 17 16 40 40 H 1.08001 * 119.46647 * 359.97438 * 20 19 18 41 41 H 1.08003 * 119.56358 * 180.02562 * 21 20 19 42 42 H 1.07999 * 120.19954 * 180.02562 * 22 21 20 43 43 H 1.08005 * 120.91749 * 359.97438 * 24 23 22 44 44 H 1.08003 * 120.03416 * 180.27646 * 25 24 23 45 45 H 1.08001 * 119.12518 * 179.41698 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1500 -0.7664 5 6 3.3621 1.0291 -2.1112 6 1 3.8674 1.8195 -2.6463 7 6 2.9440 -0.1093 -2.7865 8 7 1.9127 -0.7962 -2.3428 9 14 3.8453 -0.6663 -4.3251 10 1 5.2649 -0.9474 -3.9927 11 1 3.2069 -1.8984 -4.8539 12 1 3.7799 0.4043 -5.3519 13 6 3.3773 2.4287 -0.0940 14 6 2.1614 3.3082 -0.2318 15 8 1.1871 2.9065 -0.8320 16 7 2.1566 4.5414 0.3120 17 6 0.9744 5.3962 0.1786 18 6 1.2288 6.7316 0.8806 19 6 0.0129 7.6113 0.7428 20 6 -0.0585 8.5253 -0.2631 21 6 -1.1733 9.3480 -0.4090 22 6 -2.2244 9.2597 0.4522 23 6 -2.1850 8.3281 1.5017 24 6 -3.2508 8.2048 2.4132 25 6 -3.1509 7.2636 3.3978 26 6 -2.0081 6.4716 3.4895 27 7 -1.0150 6.5931 2.6427 28 6 -1.0542 7.4867 1.6491 29 1 -1.0502 -0.0005 0.0001 30 1 3.0098 -0.9205 -0.4553 31 1 3.0093 0.0673 1.0256 32 1 1.6204 -1.5915 -2.8150 33 1 4.2358 2.9215 -0.5505 34 1 3.5795 2.2511 0.9621 35 1 2.9360 4.8629 0.7917 36 1 0.1163 4.9036 0.6357 37 1 0.7715 5.5734 -0.8776 38 1 2.0870 7.2246 0.4238 39 1 1.4315 6.5541 1.9368 40 1 0.7622 8.6143 -0.9594 41 1 -1.2047 10.0647 -1.2163 42 1 -3.0834 9.9026 0.3287 43 1 -4.1292 8.8272 2.3273 44 1 -3.9528 7.1399 4.1107 45 1 -1.9390 5.7379 4.2790 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491538592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:08 Heat of formation + Delta-G solvation = 110.284246 kcal Electronic energy + Delta-G solvation = -27682.338548 eV Core-core repulsion = 23860.664538 eV Total energy + Delta-G solvation = -3821.674009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.10622 -38.72211 -37.51039 -35.82550 -35.03651 -33.52182 -31.56047 -31.29432 -31.01486 -30.76771 -28.61371 -26.78709 -25.77998 -24.49762 -23.82481 -23.33481 -21.64578 -20.88130 -19.52903 -18.49944 -17.41539 -17.17221 -16.98384 -16.27423 -16.10037 -15.47162 -15.20750 -14.77650 -14.75526 -14.44803 -14.31000 -14.08744 -13.66821 -13.44991 -13.25957 -13.07224 -13.04176 -12.69669 -12.31683 -12.11977 -11.79453 -11.68419 -11.63992 -11.40518 -11.22502 -11.06817 -10.75729 -10.61305 -10.58703 -10.22275 -9.85427 -9.65582 -9.01946 -9.00335 -8.63005 -8.53273 -8.37972 -8.33309 -8.16646 -6.98557 -5.66764 -3.02458 0.15496 0.59693 1.75012 2.70453 3.45325 3.51475 3.52500 3.73426 3.78258 3.93105 4.10473 4.30869 4.41986 4.47941 4.59137 4.63521 4.65354 4.76189 4.87653 4.91265 5.10351 5.15154 5.21341 5.24020 5.42552 5.52020 5.58866 5.72846 5.73873 5.79099 5.85301 5.92331 6.01997 6.07522 6.16274 6.19030 6.25723 6.32518 6.37001 6.38998 6.64046 6.76379 7.12416 7.32513 7.62887 7.73416 7.84089 8.21227 8.37444 9.16713 9.29321 9.54070 9.85426 10.27632 11.34992 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.002488 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.583015 B =11250.481886 C =11930.743976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.091 4.091 3 C 0.269 3.731 4 N -0.560 5.560 5 C -0.262 4.262 6 H 0.076 0.924 7 C 0.006 3.994 8 N -0.875 5.875 9 Si 0.897 3.103 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.285 1.285 13 C 0.130 3.870 14 C 0.465 3.535 15 O -0.499 6.499 16 N -0.750 5.750 17 C 0.134 3.866 18 C -0.084 4.084 19 C -0.049 4.049 20 C -0.102 4.102 21 C -0.110 4.110 22 C -0.105 4.105 23 C -0.102 4.102 24 C -0.061 4.061 25 C -0.175 4.175 26 C 0.129 3.871 27 N -0.463 5.463 28 C 0.131 3.869 29 H 0.183 0.817 30 H 0.094 0.906 31 H 0.037 0.963 32 H 0.253 0.747 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.390 0.610 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.612 21.355 12.372 25.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.094 4.094 3 C 0.144 3.856 4 N -0.278 5.278 5 C -0.390 4.390 6 H 0.094 0.906 7 C -0.194 4.194 8 N -0.517 5.517 9 Si 0.727 3.273 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.212 1.212 13 C -0.002 4.002 14 C 0.248 3.752 15 O -0.370 6.370 16 N -0.407 5.407 17 C 0.009 3.991 18 C -0.121 4.121 19 C -0.050 4.050 20 C -0.122 4.122 21 C -0.128 4.128 22 C -0.124 4.124 23 C -0.104 4.104 24 C -0.087 4.087 25 C -0.195 4.195 26 C -0.044 4.044 27 N -0.170 5.170 28 C 0.009 3.991 29 H 0.200 0.800 30 H 0.112 0.888 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.222 0.778 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.572 20.308 11.783 24.131 hybrid contribution -0.857 0.628 -0.914 1.401 sum -6.429 20.936 10.868 24.449 Atomic orbital electron populations 1.23949 0.95134 1.04632 1.07516 1.23906 0.94986 0.96429 0.94109 1.17949 0.83326 0.92210 0.92082 1.44357 1.73515 1.03650 1.06250 1.19104 1.31855 1.03465 0.84626 0.90592 1.24825 0.96532 0.99989 0.98008 1.70258 1.21457 1.18967 1.40994 0.86437 0.79856 0.77990 0.83037 1.21019 1.21829 1.21164 1.21026 0.93869 0.87504 0.97810 1.23371 0.92462 0.80997 0.78336 1.90744 1.35257 1.72187 1.38778 1.46478 1.17410 1.16972 1.59815 1.21016 0.89748 0.88879 0.99446 1.20692 0.94283 0.94325 1.02817 1.19439 0.94897 0.96670 0.93975 1.20872 0.98741 0.95275 0.97276 1.20917 0.93517 0.99173 0.99162 1.20951 0.99091 0.97889 0.94428 1.18845 0.95597 0.98435 0.97515 1.21454 0.97253 0.96846 0.93143 1.21910 0.99978 0.97503 1.00116 1.23018 0.88737 0.96523 0.96085 1.68052 1.28452 1.17694 1.02835 1.18737 0.93263 0.92878 0.94182 0.79970 0.88809 0.94472 0.93638 0.90664 0.91072 0.77758 0.92025 0.92682 0.90603 0.89418 0.85065 0.85424 0.85376 0.84536 0.84578 0.82357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.70 19.25 29.55 0.57 -7.13 16 2 C -0.09 -2.45 10.42 -37.12 -0.39 -2.84 16 3 C 0.27 6.68 5.51 -6.83 -0.04 6.65 16 4 N -0.56 -14.12 2.04 -177.95 -0.36 -14.48 16 5 C -0.26 -7.30 9.55 -15.06 -0.14 -7.44 16 6 H 0.08 2.08 7.96 -52.49 -0.42 1.66 16 7 C 0.01 0.18 4.80 -17.43 -0.08 0.09 16 8 N -0.87 -26.16 9.33 55.49 0.52 -25.64 16 9 Si 0.90 22.14 29.63 -169.99 -5.04 17.10 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.13 2.60 6.20 -5.19 -0.03 2.57 16 14 C 0.46 9.92 7.87 -10.98 -0.09 9.83 16 15 O -0.50 -13.61 15.37 5.56 0.09 -13.52 16 16 N -0.75 -12.03 5.56 -60.30 -0.33 -12.37 16 17 C 0.13 2.10 5.66 -4.04 -0.02 2.08 16 18 C -0.08 -0.98 5.18 -27.88 -0.14 -1.12 16 19 C -0.05 -0.58 5.14 -104.52 -0.54 -1.12 16 20 C -0.10 -1.02 9.56 -39.95 -0.38 -1.41 16 21 C -0.11 -0.96 9.95 -39.93 -0.40 -1.36 16 22 C -0.10 -0.93 9.78 -39.52 -0.39 -1.32 16 23 C -0.10 -1.10 5.74 -106.80 -0.61 -1.71 16 24 C -0.06 -0.52 9.90 -39.22 -0.39 -0.91 16 25 C -0.18 -1.43 10.03 -39.77 -0.40 -1.83 16 26 C 0.13 1.32 11.15 -17.46 -0.19 1.12 16 27 N -0.46 -6.05 9.51 -10.97 -0.10 -6.15 16 28 C 0.13 1.67 6.58 -84.86 -0.56 1.11 16 29 H 0.18 4.23 7.80 -54.08 -0.42 3.81 16 30 H 0.09 2.48 6.47 -51.93 -0.34 2.14 16 31 H 0.04 0.78 7.86 -51.93 -0.41 0.37 16 32 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 34 H 0.07 1.20 7.84 -51.93 -0.41 0.79 16 35 H 0.39 4.74 8.47 -40.82 -0.35 4.40 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 39 H 0.09 1.04 7.73 -51.93 -0.40 0.64 16 40 H 0.13 1.08 8.04 -52.49 -0.42 0.66 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 44 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 45 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -38.08 388.22 -9.70 -47.78 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.09 Total: 6.17 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -4.23 Total: -4.73 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.28 Total: -58.64 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.04 Total: 17.10 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.08 -9.70 -47.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491538592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.068 kcal (2) G-P(sol) polarization free energy of solvation -38.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds