Wall clock time and date at job start Tue Mar 31 2020 19:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46822 * 146.30146 * 3 2 1 5 5 C 1.36943 * 119.99635 * 269.99603 * 4 3 2 6 6 H 1.07996 * 120.00045 * 189.77077 * 5 4 3 7 7 C 1.38808 * 119.99864 * 9.76797 * 5 4 3 8 8 N 1.31624 * 120.00138 * 27.44636 * 7 5 4 9 9 Si 1.86808 * 119.99895 * 207.44620 * 7 5 4 10 10 H 1.48491 * 109.47027 * 60.00176 * 9 7 5 11 11 H 1.48497 * 109.47012 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.46906 * 300.00123 * 9 7 5 13 13 C 1.46499 * 120.00201 * 90.00076 * 4 3 2 14 14 C 1.50704 * 109.46698 * 265.05061 * 13 4 3 15 15 O 1.21275 * 120.00484 * 0.02562 * 14 13 4 16 16 N 1.34774 * 119.99798 * 180.02562 * 14 13 4 17 17 C 1.46496 * 120.00002 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47206 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47514 * 179.97438 * 18 17 16 20 20 C 1.36107 * 120.12825 * 265.00732 * 19 18 17 21 21 C 1.39311 * 121.06420 * 179.97438 * 20 19 18 22 22 C 1.36169 * 120.87520 * 359.97438 * 21 20 19 23 23 C 1.40389 * 119.61119 * 0.02562 * 22 21 20 24 24 C 1.40782 * 121.39042 * 180.02562 * 23 22 21 25 25 C 1.36574 * 118.15038 * 179.09200 * 24 23 22 26 26 C 1.39342 * 119.94038 * 0.88097 * 25 24 23 27 27 N 1.31079 * 121.74674 * 359.39341 * 26 25 24 28 28 C 1.33687 * 121.32690 * 0.02562 * 27 26 25 29 29 H 4.40642 * 5.51359 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.47402 * 26.29792 * 3 2 1 31 31 H 1.09004 * 109.47034 * 266.29387 * 3 2 1 32 32 H 0.96996 * 119.99551 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.47164 * 145.05376 * 13 4 3 34 34 H 1.08991 * 109.47468 * 25.04890 * 13 4 3 35 35 H 0.97004 * 120.00159 * 0.02562 * 16 14 13 36 36 H 1.08996 * 109.47599 * 59.99956 * 17 16 14 37 37 H 1.08995 * 109.47289 * 299.99655 * 17 16 14 38 38 H 1.09006 * 109.47047 * 60.00080 * 18 17 16 39 39 H 1.09004 * 109.47148 * 300.00138 * 18 17 16 40 40 H 1.08001 * 119.46647 * 359.97438 * 20 19 18 41 41 H 1.08003 * 119.56358 * 180.02562 * 21 20 19 42 42 H 1.07999 * 120.19954 * 180.02562 * 22 21 20 43 43 H 1.08005 * 120.91749 * 359.97438 * 24 23 22 44 44 H 1.08003 * 120.03416 * 180.27646 * 25 24 23 45 45 H 1.08001 * 119.12518 * 179.41698 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1500 -0.7664 5 6 3.3621 1.0291 -2.1112 6 1 3.8674 1.8195 -2.6463 7 6 2.9440 -0.1093 -2.7865 8 7 1.9127 -0.7962 -2.3428 9 14 3.8453 -0.6663 -4.3251 10 1 5.2649 -0.9474 -3.9927 11 1 3.2069 -1.8984 -4.8539 12 1 3.7799 0.4043 -5.3519 13 6 3.3773 2.4287 -0.0940 14 6 2.1614 3.3082 -0.2318 15 8 1.1871 2.9065 -0.8320 16 7 2.1566 4.5414 0.3120 17 6 0.9744 5.3962 0.1786 18 6 1.2288 6.7316 0.8806 19 6 0.0129 7.6113 0.7428 20 6 -0.0585 8.5253 -0.2631 21 6 -1.1733 9.3480 -0.4090 22 6 -2.2244 9.2597 0.4522 23 6 -2.1850 8.3281 1.5017 24 6 -3.2508 8.2048 2.4132 25 6 -3.1509 7.2636 3.3978 26 6 -2.0081 6.4716 3.4895 27 7 -1.0150 6.5931 2.6427 28 6 -1.0542 7.4867 1.6491 29 1 -1.0502 -0.0005 0.0001 30 1 3.0098 -0.9205 -0.4553 31 1 3.0093 0.0673 1.0256 32 1 1.6204 -1.5915 -2.8150 33 1 4.2358 2.9215 -0.5505 34 1 3.5795 2.2511 0.9621 35 1 2.9360 4.8629 0.7917 36 1 0.1163 4.9036 0.6357 37 1 0.7715 5.5734 -0.8776 38 1 2.0870 7.2246 0.4238 39 1 1.4315 6.5541 1.9368 40 1 0.7622 8.6143 -0.9594 41 1 -1.2047 10.0647 -1.2163 42 1 -3.0834 9.9026 0.3287 43 1 -4.1292 8.8272 2.3273 44 1 -3.9528 7.1399 4.1107 45 1 -1.9390 5.7379 4.2790 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491538592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:07 Heat of formation + Delta-G solvation = 85.936222 kcal Electronic energy + Delta-G solvation = -27683.394357 eV Core-core repulsion = 23860.664538 eV Total energy + Delta-G solvation = -3822.729819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.83174 -40.38047 -38.30069 -37.55767 -36.33551 -34.63126 -33.39829 -33.11452 -32.32172 -31.46812 -29.85683 -28.33650 -27.76712 -25.30555 -24.64568 -24.47231 -23.38114 -21.82801 -21.05996 -19.42264 -19.18609 -18.23515 -17.95067 -17.84001 -17.54082 -17.09190 -16.48017 -16.37710 -15.73352 -15.50283 -15.39466 -15.28981 -14.96377 -14.86959 -14.80548 -14.35308 -14.03289 -13.87105 -13.79295 -13.37423 -13.22227 -13.14911 -12.69088 -12.56097 -12.53588 -12.48018 -12.37042 -12.23913 -12.00499 -11.87932 -11.36326 -10.93267 -10.66606 -10.53172 -10.39178 -10.18907 -9.88513 -9.72032 -9.13687 -8.98088 -7.78649 -5.15106 -0.54704 -0.12553 1.01996 1.49434 1.51481 1.58822 2.00420 2.05304 2.36339 2.50333 2.59553 2.70086 3.12985 3.30975 3.39757 3.59282 3.80743 3.83892 3.92601 4.06051 4.10135 4.12546 4.17498 4.18399 4.29850 4.40084 4.48903 4.54300 4.62452 4.65084 4.73337 4.79394 4.89389 4.97389 5.01741 5.10467 5.17257 5.20256 5.33151 5.46666 5.50829 5.62535 5.62900 5.69650 5.72669 5.95136 6.24771 6.85843 6.98801 7.10712 7.49759 7.66343 7.86850 8.23118 9.21698 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.002488 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.583015 B =11250.481886 C =11930.743976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.107 4.107 3 C 0.267 3.733 4 N -0.574 5.574 5 C -0.264 4.264 6 H 0.077 0.923 7 C -0.050 4.050 8 N -0.908 5.908 9 Si 0.962 3.038 10 H -0.269 1.269 11 H -0.302 1.302 12 H -0.286 1.286 13 C 0.125 3.875 14 C 0.464 3.536 15 O -0.567 6.567 16 N -0.726 5.726 17 C 0.144 3.856 18 C -0.065 4.065 19 C -0.083 4.083 20 C -0.100 4.100 21 C -0.119 4.119 22 C -0.101 4.101 23 C -0.125 4.125 24 C -0.061 4.061 25 C -0.176 4.176 26 C 0.115 3.885 27 N -0.504 5.504 28 C 0.101 3.899 29 H 0.201 0.799 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.243 0.757 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.413 0.587 36 H 0.027 0.973 37 H 0.036 0.964 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.147 0.853 41 H 0.157 0.843 42 H 0.160 0.840 43 H 0.171 0.829 44 H 0.170 0.830 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.197 23.943 13.048 27.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.335 4.335 2 C -0.110 4.110 3 C 0.142 3.858 4 N -0.292 5.292 5 C -0.394 4.394 6 H 0.095 0.905 7 C -0.246 4.246 8 N -0.552 5.552 9 Si 0.791 3.209 10 H -0.195 1.195 11 H -0.228 1.228 12 H -0.213 1.213 13 C -0.006 4.006 14 C 0.249 3.751 15 O -0.443 6.443 16 N -0.382 5.382 17 C 0.019 3.981 18 C -0.103 4.103 19 C -0.084 4.084 20 C -0.120 4.120 21 C -0.137 4.137 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.086 4.086 25 C -0.196 4.196 26 C -0.057 4.057 27 N -0.212 5.212 28 C -0.019 4.019 29 H 0.218 0.782 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.250 0.750 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.165 0.835 41 H 0.174 0.826 42 H 0.177 0.823 43 H 0.188 0.812 44 H 0.187 0.813 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.092 22.974 12.512 26.651 hybrid contribution -1.047 -0.020 -1.030 1.469 sum -6.139 22.953 11.481 26.389 Atomic orbital electron populations 1.24625 0.96225 1.04793 1.07858 1.24609 0.96089 0.96348 0.93927 1.18053 0.82277 0.91614 0.93901 1.44486 1.73383 1.05688 1.05642 1.19410 1.30790 1.03195 0.86005 0.90515 1.25559 0.97322 1.00513 1.01221 1.70434 1.23072 1.19199 1.42520 0.85422 0.79111 0.76762 0.79593 1.19472 1.22834 1.21290 1.21346 0.93659 0.85608 0.99954 1.23450 0.91836 0.82235 0.77560 1.90729 1.37579 1.73891 1.42114 1.46125 1.18353 1.15504 1.58217 1.20891 0.88255 0.90463 0.98453 1.20508 0.95526 0.92092 1.02134 1.19556 0.95220 0.98176 0.95478 1.21183 0.99708 0.94573 0.96541 1.21283 0.92983 0.99429 0.99984 1.21367 0.99998 0.97239 0.93304 1.19213 0.95812 0.98841 0.98862 1.21903 0.97561 0.96940 0.92231 1.22246 0.99982 0.96707 1.00645 1.23500 0.89114 0.97129 0.95971 1.68007 1.30195 1.18963 1.04079 1.19063 0.94472 0.93735 0.94678 0.78172 0.90973 0.90421 0.94710 0.87922 0.87163 0.75017 0.95476 0.94530 0.88136 0.89717 0.83525 0.82572 0.82291 0.81174 0.81297 0.80796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.32 -17.04 19.25 74.32 1.43 -15.60 16 2 C -0.11 -5.84 10.42 31.12 0.32 -5.51 16 3 C 0.27 13.21 5.51 84.57 0.47 13.68 16 4 N -0.57 -28.58 2.04 -716.91 -1.46 -30.04 16 5 C -0.26 -14.70 9.55 84.03 0.80 -13.90 16 6 H 0.08 4.16 7.96 -2.91 -0.02 4.13 16 7 C -0.05 -2.87 4.80 84.86 0.41 -2.46 16 8 N -0.91 -55.70 9.33 21.65 0.20 -55.50 16 9 Si 0.96 46.25 29.63 68.60 2.03 48.29 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 12 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 13 C 0.12 4.75 6.20 85.63 0.53 5.28 16 14 C 0.46 19.63 7.87 87.66 0.69 20.32 16 15 O -0.57 -31.71 15.37 -3.01 -0.05 -31.75 16 16 N -0.73 -22.69 5.56 -463.08 -2.57 -25.26 16 17 C 0.14 4.63 5.66 86.38 0.49 5.12 16 18 C -0.07 -1.51 5.18 29.85 0.15 -1.35 16 19 C -0.08 -1.99 5.14 -19.80 -0.10 -2.09 16 20 C -0.10 -1.91 9.56 22.03 0.21 -1.70 16 21 C -0.12 -1.84 9.95 22.05 0.22 -1.62 16 22 C -0.10 -1.57 9.78 22.31 0.22 -1.35 16 23 C -0.13 -2.57 5.74 -21.27 -0.12 -2.69 16 24 C -0.06 -0.91 9.90 22.50 0.22 -0.69 16 25 C -0.18 -2.61 10.03 22.15 0.22 -2.39 16 26 C 0.12 2.34 11.15 85.07 0.95 3.29 16 27 N -0.50 -13.59 9.51 -188.63 -1.79 -15.38 16 28 C 0.10 2.62 6.58 40.29 0.27 2.89 16 29 H 0.20 9.55 7.80 -4.41 -0.03 9.51 16 30 H 0.07 3.88 6.47 -2.39 -0.02 3.86 16 31 H 0.08 3.14 7.86 -2.39 -0.02 3.12 16 32 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.10 3.36 8.08 -2.38 -0.02 3.34 16 34 H 0.11 3.33 7.84 -2.39 -0.02 3.31 16 35 H 0.41 9.12 8.47 -92.71 -0.79 8.34 16 36 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 1.77 8.04 -2.38 -0.02 1.75 16 39 H 0.08 1.99 7.73 -2.39 -0.02 1.98 16 40 H 0.15 2.17 8.04 -2.91 -0.02 2.15 16 41 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 42 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 44 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 45 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -87.23 388.22 3.96 -83.28 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.22 Total: 27.17 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 7.38 Total: -0.80 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -5.63 Total: -126.18 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.05 Total: -31.75 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.29 kcal Total: -87.23 3.96 -83.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491538592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.214 kcal (2) G-P(sol) polarization free energy of solvation -87.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds