Wall clock time and date at job start Tue Mar 31 2020 19:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46799 * 2 1 4 4 H 1.09004 * 109.46925 * 174.86885 * 3 2 1 5 5 C 1.50694 * 109.47371 * 54.86660 * 3 2 1 6 6 H 1.08000 * 120.00419 * 239.99981 * 5 3 2 7 7 C 1.37878 * 120.00157 * 59.99734 * 5 3 2 8 8 N 1.31520 * 119.99633 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00209 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47259 * 90.00369 * 9 7 5 11 11 H 1.48509 * 109.47111 * 210.00204 * 9 7 5 12 12 H 1.48494 * 109.47189 * 329.99835 * 9 7 5 13 13 N 1.46904 * 109.46965 * 294.86331 * 3 2 1 14 14 C 1.46897 * 111.00227 * 274.32295 * 13 3 2 15 15 H 1.09001 * 109.47113 * 35.86988 * 14 13 3 16 16 C 1.52999 * 109.47431 * 275.87223 * 14 13 3 17 17 C 1.50701 * 109.47105 * 155.86697 * 14 13 3 18 18 O 1.21235 * 119.99816 * 0.02562 * 17 14 13 19 19 N 1.34778 * 120.00078 * 180.02562 * 17 14 13 20 20 C 1.34778 * 119.99809 * 180.02562 * 19 17 14 21 21 O 1.21537 * 120.00106 * 0.02562 * 20 19 17 22 22 N 1.34773 * 119.99491 * 180.02562 * 20 19 17 23 23 C 1.40070 * 119.99853 * 185.37928 * 22 20 19 24 24 C 1.38802 * 120.07503 * 19.89149 * 23 22 20 25 25 C 1.38144 * 119.95246 * 180.02562 * 24 23 22 26 26 C 1.38281 * 120.11439 * 0.02562 * 25 24 23 27 27 C 1.38266 * 120.15049 * 359.97438 * 26 25 24 28 28 C 1.38307 * 120.04592 * 359.71913 * 27 26 25 29 29 F 1.35103 * 120.05302 * 180.29449 * 28 27 26 30 30 H 1.09001 * 109.47086 * 181.00519 * 1 2 3 31 31 H 1.08998 * 109.47575 * 301.00617 * 1 2 3 32 32 H 1.09001 * 109.47441 * 61.00790 * 1 2 3 33 33 H 1.09003 * 109.47311 * 240.00527 * 2 1 3 34 34 H 1.08994 * 109.47153 * 119.99703 * 2 1 3 35 35 H 0.96997 * 119.99883 * 179.97438 * 8 7 5 36 36 H 1.00893 * 110.99955 * 38.28199 * 13 3 2 37 37 H 1.09001 * 109.46780 * 299.99969 * 16 14 13 38 38 H 1.08991 * 109.47242 * 59.99748 * 16 14 13 39 39 H 1.09002 * 109.47237 * 179.97438 * 16 14 13 40 40 H 0.97003 * 119.99740 * 0.02562 * 19 17 14 41 41 H 0.97008 * 120.00554 * 5.37887 * 22 20 19 42 42 H 1.08007 * 120.02110 * 359.97438 * 24 23 22 43 43 H 1.08008 * 119.94336 * 179.97438 * 25 24 23 44 44 H 1.07990 * 119.92466 * 179.97438 * 26 25 24 45 45 H 1.08006 * 119.97571 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1260 1.4440 0.0919 5 6 1.4364 2.1887 1.1619 6 1 0.8272 3.0627 0.9847 7 6 1.6621 1.7557 2.4513 8 7 2.4044 0.6917 2.6672 9 14 0.9135 2.6802 3.8915 10 1 -0.4246 2.1152 4.2007 11 1 1.7948 2.5439 5.0791 12 1 0.7754 4.1162 3.5399 13 7 1.6540 2.0983 -1.2567 14 6 2.6394 1.8327 -2.3133 15 1 3.0250 0.8191 -2.2040 16 6 3.7922 2.8321 -2.1985 17 6 1.9816 1.9773 -3.6614 18 8 0.8081 2.2728 -3.7347 19 7 2.6979 1.7780 -4.7856 20 6 2.1097 1.9078 -5.9913 21 8 0.9335 2.2049 -6.0648 22 7 2.8259 1.7080 -7.1153 23 6 2.2469 1.9520 -8.3672 24 6 1.1279 2.7669 -8.4692 25 6 0.5587 3.0055 -9.7051 26 6 1.1014 2.4333 -10.8410 27 6 2.2160 1.6208 -10.7446 28 6 2.7949 1.3828 -9.5113 29 9 3.8876 0.5937 -9.4177 30 1 -0.3633 -1.0275 0.0180 31 1 -0.3634 0.5294 0.8808 32 1 -0.3634 0.4981 -0.8989 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.5635 0.3872 3.5743 36 1 0.7298 1.8134 -1.5442 37 1 3.4066 3.8457 -2.3077 38 1 4.2679 2.7275 -1.2234 39 1 4.5236 2.6347 -2.9822 40 1 3.6367 1.5412 -4.7268 41 1 3.7423 1.3952 -7.0575 42 1 0.7021 3.2135 -7.5827 43 1 -0.3123 3.6393 -9.7842 44 1 0.6537 2.6215 -11.8055 45 1 2.6378 1.1758 -11.6337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565173648.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:23 Heat of formation + Delta-G solvation = -68.093523 kcal Electronic energy + Delta-G solvation = -28885.607666 eV Core-core repulsion = 24625.429392 eV Total energy + Delta-G solvation = -4260.178274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.26679 -41.63069 -39.76589 -38.32387 -36.47172 -35.21727 -34.70887 -33.23054 -31.26248 -30.89356 -29.87643 -28.58704 -26.20919 -25.09951 -23.71962 -23.28951 -22.73379 -21.45266 -20.48922 -19.37442 -18.98686 -18.27628 -17.59869 -16.89259 -16.57808 -16.18612 -16.00891 -15.88406 -15.37053 -15.24482 -14.88131 -14.64384 -14.43307 -14.18807 -13.75505 -13.40982 -13.12636 -12.93638 -12.80112 -12.62100 -12.25300 -12.21044 -12.05246 -11.90922 -11.65299 -11.29726 -11.11236 -10.94300 -10.75140 -10.64362 -10.54175 -10.21052 -10.02226 -9.92732 -9.59949 -9.47029 -9.16391 -9.00345 -8.45739 -8.36744 -7.37528 -6.00632 -4.01374 0.74418 0.89194 1.93609 2.03900 3.01866 3.32695 3.37149 3.39439 3.43958 3.47731 3.80740 4.36595 4.42611 4.58420 4.62785 4.88111 4.97225 5.00971 5.12798 5.31542 5.40017 5.48900 5.52919 5.76360 5.79239 5.88459 5.89837 5.98968 6.10261 6.15936 6.31307 6.34395 6.37234 6.52677 6.54682 6.60086 6.88228 7.06610 7.18530 7.22627 7.48789 7.65050 7.85640 7.95797 8.01825 8.21303 8.45747 8.54279 9.04583 9.62246 11.06694 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.028602 B = 0.002138 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.707968 B =13092.670949 C =13358.303284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.147 4.147 3 C 0.216 3.784 4 H 0.037 0.963 5 C -0.487 4.487 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.667 5.667 14 C 0.072 3.928 15 H 0.069 0.931 16 C -0.134 4.134 17 C 0.517 3.483 18 O -0.453 6.453 19 N -0.687 5.687 20 C 0.697 3.303 21 O -0.509 6.509 22 N -0.676 5.676 23 C 0.140 3.860 24 C -0.115 4.115 25 C -0.103 4.103 26 C -0.116 4.116 27 C -0.131 4.131 28 C 0.059 3.941 29 F -0.140 7.140 30 H 0.023 0.977 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.008 0.992 34 H 0.095 0.905 35 H 0.259 0.741 36 H 0.343 0.657 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.411 0.589 41 H 0.412 0.588 42 H 0.167 0.833 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 0.653 -25.032 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.187 4.187 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.526 4.526 6 H 0.082 0.918 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.303 5.303 14 C -0.042 4.042 15 H 0.086 0.914 16 C -0.192 4.192 17 C 0.303 3.697 18 O -0.318 6.318 19 N -0.354 5.354 20 C 0.398 3.602 21 O -0.379 6.379 22 N -0.324 5.324 23 C 0.043 3.957 24 C -0.135 4.135 25 C -0.122 4.122 26 C -0.135 4.135 27 C -0.150 4.150 28 C 0.037 3.963 29 F -0.119 7.119 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.027 0.973 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.166 0.834 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.247 0.753 41 H 0.248 0.752 42 H 0.184 0.816 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.835 1.598 -24.656 25.004 hybrid contribution 0.797 -1.168 0.624 1.546 sum 4.632 0.430 -24.033 24.479 Atomic orbital electron populations 1.21594 0.97500 0.98411 1.01377 1.22145 0.95292 1.01033 1.00187 1.19324 0.96170 0.88598 0.85079 0.94498 1.21017 1.30540 1.11591 0.89409 0.91833 1.24898 0.95514 0.95194 0.98731 1.69872 1.38990 1.24019 1.20775 0.86542 0.78914 0.80377 0.81867 1.20839 1.21463 1.19868 1.60960 1.03901 1.63282 1.02156 1.21545 0.95730 0.99646 0.87292 0.91395 1.21773 0.95391 0.99413 1.02665 1.21551 0.87185 0.75580 0.85346 1.90805 1.15324 1.39505 1.86213 1.44342 1.16259 1.69087 1.05696 1.16123 0.85137 0.78729 0.80166 1.90983 1.13230 1.48829 1.84892 1.42613 1.17043 1.69422 1.03274 1.17599 0.96864 0.98534 0.82663 1.21751 0.94731 0.96650 1.00338 1.21218 0.99956 0.99435 0.91599 1.21032 0.95731 0.97488 0.99252 1.20955 0.97556 1.00869 0.95659 1.17315 0.88436 0.96869 0.93661 1.91476 1.51414 1.72019 1.96956 0.95758 0.91282 0.95028 0.97331 0.88649 0.93100 0.83437 0.91558 0.90273 0.93385 0.75317 0.75151 0.81613 0.84827 0.84938 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.40 37.15 0.35 -2.52 16 2 C -0.15 -3.35 5.49 -26.73 -0.15 -3.50 16 3 C 0.22 5.08 2.14 -68.86 -0.15 4.93 16 4 H 0.04 0.92 7.05 -51.93 -0.37 0.56 16 5 C -0.49 -12.87 7.33 -34.44 -0.25 -13.12 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.53 5.27 -17.82 -0.09 1.43 16 8 N -0.90 -24.52 11.38 55.43 0.63 -23.89 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.67 -13.95 5.91 -102.17 -0.60 -14.56 16 14 C 0.07 1.17 2.83 -68.87 -0.19 0.97 16 15 H 0.07 1.05 7.15 -51.93 -0.37 0.67 16 16 C -0.13 -1.85 9.29 37.16 0.35 -1.50 16 17 C 0.52 8.28 7.12 -10.98 -0.08 8.20 16 18 O -0.45 -9.32 14.06 -18.21 -0.26 -9.57 16 19 N -0.69 -7.92 5.13 -15.78 -0.08 -8.01 16 20 C 0.70 9.12 8.35 -86.92 -0.73 8.39 16 21 O -0.51 -8.83 11.65 -18.47 -0.22 -9.05 16 22 N -0.68 -6.57 5.36 -14.18 -0.08 -6.65 16 23 C 0.14 1.48 6.51 -83.59 -0.54 0.94 16 24 C -0.11 -1.27 8.78 -39.41 -0.35 -1.61 16 25 C -0.10 -0.87 10.04 -39.60 -0.40 -1.27 16 26 C -0.12 -0.81 10.04 -39.56 -0.40 -1.21 16 27 C -0.13 -0.99 10.02 -39.55 -0.40 -1.39 16 28 C 0.06 0.55 7.31 -39.26 -0.29 0.27 16 29 F -0.14 -1.29 16.75 2.25 0.04 -1.25 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 1.64 7.00 -51.93 -0.36 1.28 16 32 H 0.03 0.66 6.47 -51.93 -0.34 0.32 16 33 H 0.01 0.17 7.42 -51.93 -0.39 -0.22 16 34 H 0.10 2.42 6.22 -51.93 -0.32 2.10 16 35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.34 7.55 5.32 -39.30 -0.21 7.34 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.22 7.37 -51.93 -0.38 0.83 16 39 H 0.05 0.45 7.57 -51.93 -0.39 0.06 16 40 H 0.41 2.86 8.14 -40.82 -0.33 2.53 16 41 H 0.41 2.67 8.38 -40.82 -0.34 2.32 16 42 H 0.17 2.21 5.43 -52.48 -0.28 1.93 16 43 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 44 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 371.10 15.07 5.59 5.59 Total: -1.00 -32.86 371.10 -9.05 -41.91 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.75 Total: 10.36 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -3.31 Total: -1.00 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.13 Total: -53.10 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.47 Total: -18.62 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.86 -9.05 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565173648.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.181 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds