Wall clock time and date at job start Tue Mar 31 2020 19:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47421 * 2 1 4 4 H 1.08996 * 109.46878 * 54.67719 * 3 2 1 5 5 C 1.50691 * 109.47314 * 174.67784 * 3 2 1 6 6 H 1.08001 * 120.00069 * 120.00108 * 5 3 2 7 7 C 1.37877 * 120.00246 * 300.00074 * 5 3 2 8 8 N 1.31517 * 119.99912 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00335 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47027 * 89.99994 * 9 7 5 11 11 H 1.48502 * 109.47205 * 210.00021 * 9 7 5 12 12 H 1.48499 * 109.47091 * 330.00214 * 9 7 5 13 13 N 1.46905 * 109.46985 * 294.67651 * 3 2 1 14 14 C 1.46895 * 110.99902 * 154.04113 * 13 3 2 15 15 H 1.09006 * 109.47086 * 31.23879 * 14 13 3 16 16 C 1.53002 * 109.47504 * 271.23776 * 14 13 3 17 17 C 1.50703 * 109.47437 * 151.23717 * 14 13 3 18 18 O 1.21237 * 119.99483 * 359.97438 * 17 14 13 19 19 N 1.34768 * 120.00346 * 180.28378 * 17 14 13 20 20 C 1.34777 * 120.00172 * 179.72788 * 19 17 14 21 21 O 1.21551 * 119.99634 * 359.97438 * 20 19 17 22 22 N 1.34775 * 120.00436 * 179.97438 * 20 19 17 23 23 C 1.40063 * 120.00421 * 184.70004 * 22 20 19 24 24 C 1.38801 * 120.07289 * 19.77951 * 23 22 20 25 25 C 1.38153 * 119.95569 * 179.97438 * 24 23 22 26 26 C 1.38275 * 120.10701 * 0.02562 * 25 24 23 27 27 C 1.38268 * 120.15668 * 359.97438 * 26 25 24 28 28 C 1.38306 * 120.04534 * 359.72347 * 27 26 25 29 29 F 1.35105 * 120.05924 * 180.29903 * 28 27 26 30 30 H 1.08996 * 109.47213 * 185.69416 * 1 2 3 31 31 H 1.09005 * 109.46447 * 305.69314 * 1 2 3 32 32 H 1.09001 * 109.46736 * 65.68838 * 1 2 3 33 33 H 1.09000 * 109.47215 * 240.00320 * 2 1 3 34 34 H 1.09000 * 109.47336 * 120.00401 * 2 1 3 35 35 H 0.97001 * 120.00203 * 180.02562 * 8 7 5 36 36 H 1.00907 * 110.99803 * 30.09244 * 13 3 2 37 37 H 1.09002 * 109.46931 * 295.31104 * 16 14 13 38 38 H 1.08998 * 109.46811 * 55.31346 * 16 14 13 39 39 H 1.09002 * 109.46818 * 175.31265 * 16 14 13 40 40 H 0.97002 * 120.00198 * 359.71680 * 19 17 14 41 41 H 0.97004 * 119.99787 * 4.70843 * 22 20 19 42 42 H 1.08000 * 120.02678 * 359.97438 * 24 23 22 43 43 H 1.07997 * 119.94688 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.92334 * 179.97438 * 26 25 24 45 45 H 1.08005 * 119.97596 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6010 1.9831 0.8385 5 6 3.5412 1.4445 0.1318 6 1 4.1507 1.8876 -0.6420 7 6 4.1368 0.8807 1.2401 8 7 3.3947 0.3406 2.1821 9 14 5.9976 0.8825 1.4032 10 1 6.4317 2.1167 2.1057 11 1 6.4276 -0.3071 2.1811 12 1 6.6129 0.8395 0.0523 13 7 1.6582 2.0969 -1.2586 14 6 1.5564 3.5521 -1.0855 15 1 2.2670 3.8782 -0.3260 16 6 0.1368 3.9154 -0.6452 17 6 1.8678 4.2364 -2.3916 18 8 2.1474 3.5770 -3.3697 19 7 1.8416 5.5815 -2.4706 20 6 2.1254 6.1937 -3.6373 21 8 2.4055 5.5325 -4.6181 22 7 2.0987 7.5388 -3.7166 23 6 2.2966 8.1718 -4.9503 24 6 2.1128 7.4663 -6.1314 25 6 2.3081 8.0932 -7.3469 26 6 2.6870 9.4224 -7.3889 27 6 2.8714 10.1295 -6.2151 28 6 2.6715 9.5100 -4.9948 29 9 2.8457 10.2023 -3.8477 30 1 -0.3633 -1.0226 0.1020 31 1 -0.3632 0.5996 0.8347 32 1 -0.3633 0.4231 -0.9366 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8137 -0.0557 2.9621 36 1 0.7964 1.7144 -1.6180 37 1 -0.5654 3.6649 -1.4404 38 1 -0.1187 3.3561 0.2548 39 1 0.0834 4.9839 -0.4365 40 1 1.6182 6.1091 -1.6879 41 1 1.9426 8.0686 -2.9192 42 1 1.8172 6.4280 -6.1003 43 1 2.1654 7.5440 -8.2658 44 1 2.8392 9.9094 -8.3407 45 1 3.1677 11.1674 -6.2512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565173649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:25 Heat of formation + Delta-G solvation = -91.465189 kcal Electronic energy + Delta-G solvation = -28907.907499 eV Core-core repulsion = 24646.715753 eV Total energy + Delta-G solvation = -4261.191746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.95774 -42.60179 -40.64981 -39.23757 -38.05499 -36.20072 -35.67041 -34.90941 -33.35908 -31.56630 -30.74334 -30.14956 -28.02809 -26.29351 -24.88244 -24.30454 -23.54326 -22.37370 -21.55239 -21.51002 -20.14161 -19.04662 -18.42087 -18.25022 -17.65158 -17.34810 -17.09113 -16.77355 -16.63484 -16.44449 -15.96884 -15.93312 -15.51762 -15.21999 -15.07226 -14.87586 -14.47205 -14.29453 -14.11778 -13.66503 -13.52056 -13.45084 -13.22037 -13.01733 -12.85093 -12.78426 -12.69139 -12.57399 -12.35538 -11.99257 -11.94226 -11.73197 -11.57077 -11.47565 -11.26753 -11.04257 -10.60753 -10.42813 -9.84957 -9.18206 -9.00010 -8.07415 -6.18510 0.04572 0.21579 1.00788 1.03941 1.38221 1.41796 1.51963 2.06273 2.43030 2.60897 2.67195 3.12664 3.17594 3.55544 3.66388 3.76088 3.99235 4.10098 4.27179 4.30148 4.33370 4.42584 4.53740 4.59840 4.71512 4.74628 4.82941 4.86519 4.99645 5.09076 5.09887 5.18887 5.20697 5.25192 5.30089 5.37641 5.41705 5.53481 5.61288 5.75204 5.88762 5.92460 6.27488 6.36715 6.50838 6.91848 6.94259 7.05414 7.07833 7.50543 8.94715 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.002481 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.552202 B =11280.931262 C =11994.444827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.233 3.767 4 H -0.005 1.005 5 C -0.515 4.515 6 H 0.038 0.962 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.946 3.054 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.283 1.283 13 N -0.682 5.682 14 C 0.080 3.920 15 H 0.107 0.893 16 C -0.167 4.167 17 C 0.526 3.474 18 O -0.497 6.497 19 N -0.669 5.669 20 C 0.695 3.305 21 O -0.556 6.556 22 N -0.658 5.658 23 C 0.118 3.882 24 C -0.140 4.140 25 C -0.106 4.106 26 C -0.105 4.105 27 C -0.127 4.127 28 C 0.053 3.947 29 F -0.141 7.141 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.262 0.738 36 H 0.334 0.666 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.432 0.568 41 H 0.428 0.572 42 H 0.138 0.862 43 H 0.150 0.850 44 H 0.168 0.832 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.119 22.129 -11.161 26.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C 0.125 3.875 4 H 0.013 0.987 5 C -0.554 4.554 6 H 0.057 0.943 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.773 3.227 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.315 5.315 14 C -0.034 4.034 15 H 0.125 0.875 16 C -0.226 4.226 17 C 0.313 3.687 18 O -0.365 6.365 19 N -0.338 5.338 20 C 0.397 3.603 21 O -0.430 6.430 22 N -0.307 5.307 23 C 0.022 3.978 24 C -0.160 4.160 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.146 4.146 28 C 0.031 3.969 29 F -0.119 7.119 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.154 0.846 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.272 0.728 41 H 0.267 0.733 42 H 0.156 0.844 43 H 0.167 0.833 44 H 0.185 0.815 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.052 20.966 -12.562 25.438 hybrid contribution 0.306 0.177 1.871 1.905 sum -6.746 21.143 -10.690 24.634 Atomic orbital electron populations 1.21747 0.95881 1.01252 1.00696 1.21624 0.94566 0.99085 1.01012 1.18945 0.93585 0.90652 0.84274 0.98720 1.21443 0.93128 1.36940 1.03875 0.94332 1.25516 1.01574 0.95260 0.95649 1.69955 1.35926 1.39512 1.09807 0.85746 0.81646 0.77811 0.77520 1.19808 1.20663 1.20853 1.60061 1.38248 1.01282 1.31872 1.21436 0.99926 0.90435 0.91631 0.87502 1.22413 0.93435 1.04418 1.02324 1.21641 0.75079 0.80446 0.91569 1.90772 1.41956 1.64607 1.39209 1.44040 1.67723 1.08686 1.13332 1.16283 0.78118 0.82100 0.83815 1.90968 1.51282 1.64796 1.35921 1.42379 1.73208 1.04455 1.10695 1.17779 1.02995 0.91217 0.85859 1.21663 1.01247 1.01837 0.91262 1.21472 0.97964 0.95531 0.97528 1.21419 0.98226 0.93597 0.99127 1.21360 1.01113 1.02333 0.89774 1.17459 1.07298 0.88720 0.83454 1.91474 1.93518 1.78785 1.48154 0.92734 0.93343 0.92711 0.95454 0.90977 0.92913 0.84583 0.91615 0.91299 0.88222 0.72824 0.73327 0.84423 0.83258 0.81453 0.81634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 9.64 71.98 0.69 -4.24 16 2 C -0.12 -5.75 5.36 30.60 0.16 -5.59 16 3 C 0.23 11.15 1.83 44.17 0.08 11.23 16 4 H 0.00 -0.23 7.39 -2.39 -0.02 -0.25 16 5 C -0.52 -28.50 8.57 25.60 0.22 -28.28 16 6 H 0.04 2.27 7.81 -2.91 -0.02 2.24 16 7 C 0.02 1.04 5.29 84.65 0.45 1.48 16 8 N -0.91 -50.69 11.29 21.45 0.24 -50.44 16 9 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 13 N -0.68 -28.66 5.55 -477.15 -2.65 -31.31 16 14 C 0.08 2.67 2.79 44.17 0.12 2.79 16 15 H 0.11 3.74 7.64 -2.38 -0.02 3.72 16 16 C -0.17 -3.84 9.01 71.98 0.65 -3.20 16 17 C 0.53 18.26 7.16 87.66 0.63 18.89 16 18 O -0.50 -22.96 14.83 19.87 0.29 -22.67 16 19 N -0.67 -16.52 5.15 -440.52 -2.27 -18.79 16 20 C 0.70 19.88 8.36 179.05 1.50 21.38 16 21 O -0.56 -21.55 11.62 18.89 0.22 -21.33 16 22 N -0.66 -13.67 5.36 -317.04 -1.70 -15.36 16 23 C 0.12 2.62 6.51 38.15 0.25 2.87 16 24 C -0.14 -3.34 8.79 22.38 0.20 -3.15 16 25 C -0.11 -1.79 10.04 22.26 0.22 -1.57 16 26 C -0.11 -1.27 10.04 22.29 0.22 -1.04 16 27 C -0.13 -1.69 10.02 22.29 0.22 -1.47 16 28 C 0.05 0.96 7.31 22.48 0.16 1.13 16 29 F -0.14 -2.52 16.75 44.97 0.75 -1.77 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.05 1.74 6.64 -2.39 -0.02 1.72 16 33 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 3.78 5.94 -2.39 -0.01 3.76 16 35 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 36 H 0.33 12.94 6.26 -89.69 -0.56 12.38 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.73 7.70 -2.39 -0.02 1.71 16 39 H 0.10 1.45 7.71 -2.39 -0.02 1.43 16 40 H 0.43 6.04 8.23 -92.71 -0.76 5.28 16 41 H 0.43 5.69 8.38 -92.71 -0.78 4.91 16 42 H 0.14 4.17 5.40 -2.91 -0.02 4.15 16 43 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 44 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 45 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -78.08 376.27 1.66 -76.42 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -1.04 Total: 27.67 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 5.78 Total: 11.24 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -6.37 Total: -115.91 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: 0.51 Total: -44.00 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.75 Total: -1.77 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -78.08 1.66 -76.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565173649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.048 kcal (2) G-P(sol) polarization free energy of solvation -78.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds