Wall clock time and date at job start Tue Mar 31 2020 19:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47038 * 2 1 4 4 H 1.08999 * 109.47686 * 305.35210 * 3 2 1 5 5 C 1.50706 * 109.46950 * 185.35142 * 3 2 1 6 6 H 1.08001 * 120.00453 * 239.99871 * 5 3 2 7 7 C 1.37879 * 119.99535 * 60.00515 * 5 3 2 8 8 N 1.31510 * 120.00463 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99824 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47222 * 89.99562 * 9 7 5 11 11 H 1.48495 * 109.47279 * 209.99880 * 9 7 5 12 12 H 1.48505 * 109.47021 * 330.00192 * 9 7 5 13 13 N 1.46899 * 109.47056 * 65.35734 * 3 2 1 14 14 C 1.46903 * 110.99671 * 202.88585 * 13 3 2 15 15 H 1.08993 * 109.47466 * 328.40139 * 14 13 3 16 16 C 1.53000 * 109.47179 * 88.40417 * 14 13 3 17 17 C 1.50708 * 109.46739 * 208.40239 * 14 13 3 18 18 O 1.21237 * 119.99930 * 359.97438 * 17 14 13 19 19 N 1.34777 * 119.99821 * 180.02562 * 17 14 13 20 20 C 1.34780 * 119.99917 * 179.97438 * 19 17 14 21 21 O 1.21537 * 120.00158 * 359.97438 * 20 19 17 22 22 N 1.34779 * 119.99796 * 179.97438 * 20 19 17 23 23 C 1.40062 * 119.99889 * 184.83073 * 22 20 19 24 24 C 1.38800 * 120.07631 * 19.84477 * 23 22 20 25 25 C 1.38149 * 119.95368 * 180.02562 * 24 23 22 26 26 C 1.38276 * 120.11112 * 0.02562 * 25 24 23 27 27 C 1.38268 * 120.15710 * 359.97438 * 26 25 24 28 28 C 1.38313 * 120.04229 * 359.71739 * 27 26 25 29 29 F 1.35096 * 120.05568 * 180.29632 * 28 27 26 30 30 H 1.08993 * 109.47220 * 294.15004 * 1 2 3 31 31 H 1.08999 * 109.46923 * 54.15044 * 1 2 3 32 32 H 1.09005 * 109.46777 * 174.14762 * 1 2 3 33 33 H 1.09003 * 109.47177 * 120.00665 * 2 1 3 34 34 H 1.09004 * 109.47251 * 240.00152 * 2 1 3 35 35 H 0.96996 * 120.00322 * 180.02562 * 8 7 5 36 36 H 1.00902 * 110.99919 * 326.84073 * 13 3 2 37 37 H 1.08999 * 109.47376 * 184.73241 * 16 14 13 38 38 H 1.09003 * 109.47228 * 304.74042 * 16 14 13 39 39 H 1.09009 * 109.47088 * 64.73579 * 16 14 13 40 40 H 0.97005 * 119.99750 * 359.97438 * 19 17 14 41 41 H 0.97005 * 119.99806 * 4.84180 * 22 20 19 42 42 H 1.08000 * 120.02407 * 359.97438 * 24 23 22 43 43 H 1.08004 * 119.94236 * 180.02562 * 25 24 23 44 44 H 1.08000 * 119.92072 * 179.97438 * 26 25 24 45 45 H 1.07994 * 119.97862 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6005 1.9833 -0.8381 5 6 3.5412 1.4445 -0.1325 6 1 4.1511 1.8875 0.6410 7 6 4.1361 0.8809 -1.2414 8 7 3.3936 0.3411 -2.1831 9 14 5.9968 0.8840 -1.4061 10 1 6.5504 -0.3487 -0.7902 11 1 6.3665 0.9281 -2.8436 12 1 6.5529 2.0751 -0.7151 13 7 1.6587 2.0966 1.2588 14 6 1.6277 3.5572 1.1047 15 1 2.3745 3.8611 0.3714 16 6 0.2397 3.9904 0.6287 17 6 1.9304 4.2086 2.4296 18 8 2.1498 3.5238 3.4057 19 7 1.9562 5.5524 2.5295 20 6 2.2264 6.1350 3.7145 21 8 2.4464 5.4485 4.6930 22 7 2.2527 7.4788 3.8143 23 6 2.6322 8.0843 5.0189 24 6 3.3606 7.3678 5.9584 25 6 3.7331 7.9673 7.1459 26 6 3.3811 9.2800 7.4006 27 6 2.6555 9.9981 6.4679 28 6 2.2847 9.4062 5.2741 29 9 1.5809 10.1094 4.3602 30 1 -0.3633 0.4204 0.9376 31 1 -0.3633 0.6019 -0.8330 32 1 -0.3633 -1.0224 -0.1048 33 1 1.8934 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 3.8121 -0.0557 -2.9630 36 1 0.7722 1.7492 1.5928 37 1 0.2407 5.0628 0.4338 38 1 -0.0142 3.4550 -0.2862 39 1 -0.4965 3.7620 1.3996 40 1 1.7803 6.1002 1.7486 41 1 2.0087 8.0266 3.0518 42 1 3.6352 6.3420 5.7615 43 1 4.3002 7.4097 7.8766 44 1 3.6735 9.7456 8.3302 45 1 2.3825 11.0233 6.6696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565173651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:32 Heat of formation + Delta-G solvation = -68.748561 kcal Electronic energy + Delta-G solvation = -28914.238052 eV Core-core repulsion = 24654.031373 eV Total energy + Delta-G solvation = -4260.206679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.20618 -41.44900 -39.58275 -38.15036 -36.43651 -35.09338 -34.46878 -33.21127 -31.57024 -30.82748 -29.80800 -28.74119 -26.19473 -25.13040 -23.67742 -23.00714 -22.53895 -21.29072 -20.27036 -19.71034 -19.13084 -18.12721 -17.43937 -16.54003 -16.42817 -16.15573 -16.07700 -15.80788 -15.25609 -14.98203 -14.96029 -14.51958 -14.27682 -14.09526 -13.72234 -13.60723 -13.34227 -12.95135 -12.74659 -12.64597 -12.24073 -12.18113 -11.95066 -11.87490 -11.81510 -11.23410 -11.05707 -11.00931 -10.90661 -10.64381 -10.48449 -10.02073 -10.00825 -9.92299 -9.68560 -9.25293 -9.13335 -9.06696 -8.40216 -8.37143 -7.34836 -6.02393 -4.06946 0.82027 0.96432 2.08183 2.26040 3.20478 3.30463 3.37249 3.41427 3.47443 3.61361 3.87581 4.40997 4.43397 4.65941 4.79411 4.94462 5.04278 5.05793 5.21373 5.25224 5.31643 5.49678 5.57709 5.80629 5.84969 5.87470 6.01504 6.05623 6.09447 6.12271 6.13785 6.22521 6.24744 6.38614 6.51340 6.68257 6.80899 7.00683 7.08923 7.23322 7.41171 7.72119 7.86222 8.10870 8.14864 8.29038 8.35532 8.64776 9.01798 9.58806 11.02632 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.002485 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.834023 B =11267.124083 C =11951.012402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.222 3.778 4 H 0.006 0.994 5 C -0.498 4.498 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.664 5.664 14 C 0.081 3.919 15 H 0.117 0.883 16 C -0.178 4.178 17 C 0.518 3.482 18 O -0.441 6.441 19 N -0.690 5.690 20 C 0.697 3.303 21 O -0.511 6.511 22 N -0.677 5.677 23 C 0.142 3.858 24 C -0.115 4.115 25 C -0.103 4.103 26 C -0.117 4.117 27 C -0.132 4.132 28 C 0.058 3.942 29 F -0.140 7.140 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.043 0.957 34 H 0.101 0.899 35 H 0.260 0.740 36 H 0.327 0.673 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.408 0.592 41 H 0.412 0.588 42 H 0.168 0.832 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 19.368 10.564 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.115 3.885 4 H 0.024 0.976 5 C -0.537 4.537 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.296 5.296 14 C -0.034 4.034 15 H 0.134 0.866 16 C -0.237 4.237 17 C 0.303 3.697 18 O -0.304 6.304 19 N -0.357 5.357 20 C 0.398 3.602 21 O -0.382 6.382 22 N -0.325 5.325 23 C 0.045 3.955 24 C -0.135 4.135 25 C -0.122 4.122 26 C -0.137 4.137 27 C -0.151 4.151 28 C 0.035 3.965 29 F -0.119 7.119 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.146 0.854 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.243 0.757 41 H 0.248 0.752 42 H 0.185 0.815 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.946 18.050 12.025 22.045 hybrid contribution -0.209 0.961 -1.759 2.015 sum -4.156 19.011 10.265 22.002 Atomic orbital electron populations 1.21891 0.99537 0.99903 0.99491 1.21757 0.91282 1.00019 1.03345 1.19231 0.95555 0.90186 0.83501 0.97647 1.21229 0.91169 1.36968 1.04307 0.92016 1.24935 0.98140 0.95472 0.95769 1.69859 1.34761 1.39200 1.09641 0.86552 0.85735 0.78588 0.76854 1.20668 1.21418 1.20008 1.60279 1.35408 0.99607 1.34280 1.21381 0.97848 0.92482 0.91712 0.86554 1.22506 0.97068 1.01535 1.02597 1.21611 0.76158 0.79332 0.92594 1.90786 1.40025 1.61275 1.38349 1.44488 1.69863 1.10037 1.11327 1.16165 0.78461 0.81315 0.84230 1.90968 1.50439 1.61749 1.35000 1.42651 1.70068 1.05857 1.13900 1.17609 0.98813 0.90941 0.88125 1.21796 0.96103 1.02673 0.92962 1.21219 0.99308 0.94745 0.96938 1.21019 0.98769 0.94513 0.99357 1.20939 1.00705 1.01113 0.92328 1.17314 1.00084 0.89538 0.89516 1.91468 1.76631 1.78340 1.65487 0.94546 0.93872 0.94279 0.93779 0.88069 0.93004 0.85376 0.92408 0.90676 0.92389 0.75652 0.75240 0.81488 0.84866 0.85007 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.62 37.16 0.36 -2.43 16 2 C -0.13 -2.87 5.38 -26.73 -0.14 -3.01 16 3 C 0.22 5.20 1.86 -68.87 -0.13 5.07 16 4 H 0.01 0.15 7.36 -51.93 -0.38 -0.24 16 5 C -0.50 -13.29 8.40 -34.44 -0.29 -13.58 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.54 5.29 -17.82 -0.09 1.45 16 8 N -0.89 -24.49 11.29 55.43 0.63 -23.86 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.66 -13.71 5.54 -102.17 -0.57 -14.28 16 14 C 0.08 1.36 2.79 -68.86 -0.19 1.16 16 15 H 0.12 2.04 7.53 -51.93 -0.39 1.65 16 16 C -0.18 -2.26 9.01 37.16 0.33 -1.92 16 17 C 0.52 8.91 7.16 -10.98 -0.08 8.83 16 18 O -0.44 -9.77 14.83 -18.21 -0.27 -10.04 16 19 N -0.69 -8.72 5.15 -15.78 -0.08 -8.80 16 20 C 0.70 9.85 8.36 -86.91 -0.73 9.13 16 21 O -0.51 -9.43 11.63 -18.47 -0.21 -9.65 16 22 N -0.68 -7.21 5.36 -14.18 -0.08 -7.28 16 23 C 0.14 1.62 6.51 -83.59 -0.54 1.08 16 24 C -0.12 -1.38 8.79 -39.41 -0.35 -1.73 16 25 C -0.10 -0.96 10.04 -39.60 -0.40 -1.36 16 26 C -0.12 -0.90 10.04 -39.56 -0.40 -1.30 16 27 C -0.13 -1.08 10.02 -39.54 -0.40 -1.47 16 28 C 0.06 0.57 7.31 -39.26 -0.29 0.29 16 29 F -0.14 -1.37 16.75 2.25 0.04 -1.34 16 30 H 0.04 0.61 6.65 -51.93 -0.35 0.26 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.33 6.33 6.30 -39.29 -0.25 6.09 16 37 H 0.06 0.53 7.70 -51.93 -0.40 0.13 16 38 H 0.07 1.03 7.62 -51.93 -0.40 0.63 16 39 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 40 H 0.41 3.27 8.22 -40.82 -0.34 2.93 16 41 H 0.41 3.03 8.38 -40.82 -0.34 2.68 16 42 H 0.17 2.43 5.40 -52.49 -0.28 2.14 16 43 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 44 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -33.73 375.94 -9.16 -42.89 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.94 Total: 10.36 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -3.33 Total: 0.20 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.10 Total: -54.23 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.48 Total: -19.69 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.73 -9.16 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565173651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.856 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds