Wall clock time and date at job start Tue Mar 31 2020 19:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47038 * 2 1 4 4 H 1.08999 * 109.47686 * 305.35210 * 3 2 1 5 5 C 1.50706 * 109.46950 * 185.35142 * 3 2 1 6 6 H 1.08001 * 120.00453 * 239.99871 * 5 3 2 7 7 C 1.37879 * 119.99535 * 60.00515 * 5 3 2 8 8 N 1.31510 * 120.00463 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99824 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47222 * 89.99562 * 9 7 5 11 11 H 1.48495 * 109.47279 * 209.99880 * 9 7 5 12 12 H 1.48505 * 109.47021 * 330.00192 * 9 7 5 13 13 N 1.46899 * 109.47056 * 65.35734 * 3 2 1 14 14 C 1.46903 * 110.99671 * 202.88585 * 13 3 2 15 15 H 1.08993 * 109.47466 * 328.40139 * 14 13 3 16 16 C 1.53000 * 109.47179 * 88.40417 * 14 13 3 17 17 C 1.50708 * 109.46739 * 208.40239 * 14 13 3 18 18 O 1.21237 * 119.99930 * 359.97438 * 17 14 13 19 19 N 1.34777 * 119.99821 * 180.02562 * 17 14 13 20 20 C 1.34780 * 119.99917 * 179.97438 * 19 17 14 21 21 O 1.21537 * 120.00158 * 359.97438 * 20 19 17 22 22 N 1.34779 * 119.99796 * 179.97438 * 20 19 17 23 23 C 1.40062 * 119.99889 * 184.83073 * 22 20 19 24 24 C 1.38800 * 120.07631 * 19.84477 * 23 22 20 25 25 C 1.38149 * 119.95368 * 180.02562 * 24 23 22 26 26 C 1.38276 * 120.11112 * 0.02562 * 25 24 23 27 27 C 1.38268 * 120.15710 * 359.97438 * 26 25 24 28 28 C 1.38313 * 120.04229 * 359.71739 * 27 26 25 29 29 F 1.35096 * 120.05568 * 180.29632 * 28 27 26 30 30 H 1.08993 * 109.47220 * 294.15004 * 1 2 3 31 31 H 1.08999 * 109.46923 * 54.15044 * 1 2 3 32 32 H 1.09005 * 109.46777 * 174.14762 * 1 2 3 33 33 H 1.09003 * 109.47177 * 120.00665 * 2 1 3 34 34 H 1.09004 * 109.47251 * 240.00152 * 2 1 3 35 35 H 0.96996 * 120.00322 * 180.02562 * 8 7 5 36 36 H 1.00902 * 110.99919 * 326.84073 * 13 3 2 37 37 H 1.08999 * 109.47376 * 184.73241 * 16 14 13 38 38 H 1.09003 * 109.47228 * 304.74042 * 16 14 13 39 39 H 1.09009 * 109.47088 * 64.73579 * 16 14 13 40 40 H 0.97005 * 119.99750 * 359.97438 * 19 17 14 41 41 H 0.97005 * 119.99806 * 4.84180 * 22 20 19 42 42 H 1.08000 * 120.02407 * 359.97438 * 24 23 22 43 43 H 1.08004 * 119.94236 * 180.02562 * 25 24 23 44 44 H 1.08000 * 119.92072 * 179.97438 * 26 25 24 45 45 H 1.07994 * 119.97862 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6005 1.9833 -0.8381 5 6 3.5412 1.4445 -0.1325 6 1 4.1511 1.8875 0.6410 7 6 4.1361 0.8809 -1.2414 8 7 3.3936 0.3411 -2.1831 9 14 5.9968 0.8840 -1.4061 10 1 6.5504 -0.3487 -0.7902 11 1 6.3665 0.9281 -2.8436 12 1 6.5529 2.0751 -0.7151 13 7 1.6587 2.0966 1.2588 14 6 1.6277 3.5572 1.1047 15 1 2.3745 3.8611 0.3714 16 6 0.2397 3.9904 0.6287 17 6 1.9304 4.2086 2.4296 18 8 2.1498 3.5238 3.4057 19 7 1.9562 5.5524 2.5295 20 6 2.2264 6.1350 3.7145 21 8 2.4464 5.4485 4.6930 22 7 2.2527 7.4788 3.8143 23 6 2.6322 8.0843 5.0189 24 6 3.3606 7.3678 5.9584 25 6 3.7331 7.9673 7.1459 26 6 3.3811 9.2800 7.4006 27 6 2.6555 9.9981 6.4679 28 6 2.2847 9.4062 5.2741 29 9 1.5809 10.1094 4.3602 30 1 -0.3633 0.4204 0.9376 31 1 -0.3633 0.6019 -0.8330 32 1 -0.3633 -1.0224 -0.1048 33 1 1.8934 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 3.8121 -0.0557 -2.9630 36 1 0.7722 1.7492 1.5928 37 1 0.2407 5.0628 0.4338 38 1 -0.0142 3.4550 -0.2862 39 1 -0.4965 3.7620 1.3996 40 1 1.7803 6.1002 1.7486 41 1 2.0087 8.0266 3.0518 42 1 3.6352 6.3420 5.7615 43 1 4.3002 7.4097 7.8766 44 1 3.6735 9.7456 8.3302 45 1 2.3825 11.0233 6.6696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565173651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:31 Heat of formation + Delta-G solvation = -91.616436 kcal Electronic energy + Delta-G solvation = -28915.229677 eV Core-core repulsion = 24654.031373 eV Total energy + Delta-G solvation = -4261.198304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.95708 -42.60277 -40.65084 -39.23887 -38.04982 -36.20281 -35.67138 -34.90575 -33.37071 -31.56917 -30.74298 -30.14020 -28.03321 -26.29887 -24.89491 -24.30531 -23.54097 -22.37394 -21.54522 -21.50211 -20.14360 -19.06669 -18.38329 -18.24818 -17.64655 -17.40337 -17.01875 -16.79321 -16.66727 -16.42508 -16.01987 -15.90732 -15.51407 -15.22770 -15.05804 -14.87348 -14.46526 -14.28204 -14.14137 -13.64902 -13.53963 -13.46038 -13.21712 -13.02177 -12.85276 -12.79912 -12.69356 -12.54167 -12.35496 -11.98689 -11.95122 -11.73981 -11.56545 -11.47414 -11.27631 -11.02782 -10.61150 -10.42920 -9.85245 -9.18350 -9.00320 -8.07234 -6.18480 0.04355 0.21217 1.00409 1.04320 1.39456 1.42790 1.51313 2.06117 2.43202 2.60881 2.66859 3.12022 3.18003 3.55445 3.66341 3.75976 3.98930 4.10143 4.27711 4.29800 4.33137 4.42366 4.53886 4.59889 4.71452 4.74116 4.82836 4.86532 4.99447 5.09055 5.09737 5.18552 5.20562 5.25731 5.29840 5.37553 5.41706 5.53391 5.61474 5.75290 5.88461 5.92127 6.27358 6.36662 6.49543 6.91737 6.94357 7.05162 7.07752 7.50525 8.95121 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.002485 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.834023 B =11267.124083 C =11951.012402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.233 3.767 4 H -0.006 1.006 5 C -0.515 4.515 6 H 0.040 0.960 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.947 3.053 10 H -0.283 1.283 11 H -0.278 1.278 12 H -0.275 1.275 13 N -0.682 5.682 14 C 0.081 3.919 15 H 0.108 0.892 16 C -0.167 4.167 17 C 0.526 3.474 18 O -0.497 6.497 19 N -0.669 5.669 20 C 0.695 3.305 21 O -0.555 6.555 22 N -0.658 5.658 23 C 0.118 3.882 24 C -0.141 4.141 25 C -0.107 4.107 26 C -0.105 4.105 27 C -0.126 4.126 28 C 0.055 3.945 29 F -0.139 7.139 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.262 0.738 36 H 0.334 0.666 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.432 0.568 41 H 0.428 0.572 42 H 0.135 0.865 43 H 0.148 0.852 44 H 0.168 0.832 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.675 22.236 11.028 25.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C 0.125 3.875 4 H 0.011 0.989 5 C -0.554 4.554 6 H 0.058 0.942 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.774 3.226 10 H -0.209 1.209 11 H -0.204 1.204 12 H -0.200 1.200 13 N -0.314 5.314 14 C -0.034 4.034 15 H 0.126 0.874 16 C -0.226 4.226 17 C 0.313 3.687 18 O -0.366 6.366 19 N -0.338 5.338 20 C 0.397 3.603 21 O -0.429 6.429 22 N -0.307 5.307 23 C 0.022 3.978 24 C -0.162 4.162 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.145 4.145 28 C 0.033 3.967 29 F -0.118 7.118 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.153 0.847 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.272 0.728 41 H 0.267 0.733 42 H 0.153 0.847 43 H 0.166 0.834 44 H 0.186 0.814 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.730 21.013 12.441 24.874 hybrid contribution 0.061 0.184 -1.816 1.826 sum -4.669 21.197 10.625 24.166 Atomic orbital electron populations 1.21746 0.95968 1.01225 1.00662 1.21606 0.94507 0.99085 1.00973 1.18945 0.93678 0.90646 0.84212 0.98861 1.21430 0.93016 1.37055 1.03874 0.94178 1.25526 1.01621 0.95265 0.95612 1.69954 1.35958 1.39463 1.09853 0.85730 0.81586 0.78190 0.77101 1.20924 1.20375 1.20037 1.60065 1.36235 1.02089 1.33019 1.21423 1.00310 0.90373 0.91301 0.87408 1.22412 0.93943 1.04118 1.02145 1.21641 0.74822 0.80392 0.91860 1.90770 1.42802 1.62933 1.40052 1.44045 1.68794 1.08854 1.12109 1.16284 0.78086 0.82193 0.83762 1.90966 1.52269 1.63137 1.36568 1.42378 1.69183 1.04555 1.14632 1.17765 0.99953 0.91799 0.88286 1.21644 0.97960 1.01733 0.94818 1.21461 0.99129 0.95822 0.96124 1.21417 0.97118 0.93451 1.00344 1.21364 0.99503 1.02373 0.91246 1.17429 1.00193 0.88891 0.90236 1.91471 1.76616 1.78124 1.65601 0.92758 0.93369 0.92755 0.95477 0.90977 0.92915 0.84651 0.88222 0.91322 0.91703 0.72825 0.73298 0.84719 0.83406 0.81431 0.81510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 9.62 71.98 0.69 -4.30 16 2 C -0.12 -5.72 5.38 30.59 0.16 -5.56 16 3 C 0.23 11.13 1.86 44.17 0.08 11.21 16 4 H -0.01 -0.30 7.36 -2.39 -0.02 -0.32 16 5 C -0.51 -28.26 8.40 25.60 0.22 -28.05 16 6 H 0.04 2.32 7.81 -2.91 -0.02 2.30 16 7 C 0.02 1.02 5.29 84.66 0.45 1.47 16 8 N -0.91 -50.58 11.29 21.45 0.24 -50.34 16 9 Si 0.95 43.99 29.54 68.60 2.03 46.01 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.68 -28.66 5.54 -477.15 -2.64 -31.30 16 14 C 0.08 2.69 2.79 44.17 0.12 2.81 16 15 H 0.11 3.80 7.53 -2.39 -0.02 3.78 16 16 C -0.17 -3.92 9.01 71.98 0.65 -3.27 16 17 C 0.53 18.33 7.16 87.66 0.63 18.96 16 18 O -0.50 -22.98 14.83 19.86 0.29 -22.68 16 19 N -0.67 -16.63 5.15 -440.51 -2.27 -18.89 16 20 C 0.70 19.95 8.36 179.05 1.50 21.45 16 21 O -0.56 -21.60 11.63 18.93 0.22 -21.38 16 22 N -0.66 -13.71 5.36 -317.04 -1.70 -15.41 16 23 C 0.12 2.65 6.51 38.15 0.25 2.90 16 24 C -0.14 -3.48 8.79 22.38 0.20 -3.28 16 25 C -0.11 -1.86 10.04 22.26 0.22 -1.64 16 26 C -0.10 -1.28 10.04 22.29 0.22 -1.05 16 27 C -0.13 -1.65 10.02 22.29 0.22 -1.43 16 28 C 0.05 0.98 7.31 22.48 0.16 1.15 16 29 F -0.14 -2.41 16.75 44.97 0.75 -1.65 16 30 H 0.05 1.75 6.65 -2.39 -0.02 1.74 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 3.78 5.94 -2.38 -0.01 3.77 16 35 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 36 H 0.33 12.97 6.30 -89.69 -0.56 12.40 16 37 H 0.10 1.49 7.70 -2.39 -0.02 1.47 16 38 H 0.07 1.75 7.62 -2.39 -0.02 1.73 16 39 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.43 6.11 8.22 -92.70 -0.76 5.35 16 41 H 0.43 5.66 8.38 -92.70 -0.78 4.88 16 42 H 0.14 4.27 5.40 -2.91 -0.02 4.25 16 43 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 45 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -77.52 375.94 1.67 -75.86 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: -1.04 Total: 28.43 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 5.78 Total: 11.36 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -6.37 Total: -115.94 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: 0.51 Total: -44.07 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.75 Total: -1.65 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -77.52 1.67 -75.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565173651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.760 kcal (2) G-P(sol) polarization free energy of solvation -77.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds