Wall clock time and date at job start Tue Mar 31 2020 19:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47341 * 2 1 4 4 N 1.46496 * 109.47406 * 179.97438 * 3 2 1 5 5 C 1.46494 * 120.00368 * 89.99990 * 4 3 2 6 6 C 1.50698 * 109.47487 * 89.99543 * 5 4 3 7 7 C 1.38219 * 120.00966 * 104.99793 * 6 5 4 8 8 C 1.38227 * 120.02402 * 179.72409 * 7 6 5 9 9 C 1.38263 * 120.05156 * 0.30685 * 8 7 6 10 10 C 1.38177 * 120.02526 * 359.97438 * 9 8 7 11 11 C 1.38439 * 120.01637 * 285.30499 * 6 5 4 12 12 F 1.35105 * 120.02463 * 359.97438 * 11 6 5 13 13 C 1.34777 * 119.99949 * 269.99936 * 4 3 2 14 14 O 1.21581 * 120.00157 * 180.02562 * 13 4 3 15 15 N 1.34781 * 119.99774 * 359.97438 * 13 4 3 16 16 C 1.46503 * 119.99697 * 180.02562 * 15 13 4 17 17 C 1.50702 * 109.47117 * 180.02562 * 16 15 13 18 18 O 1.21290 * 119.99634 * 359.97438 * 17 16 15 19 19 N 1.34772 * 119.99909 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99974 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00054 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00409 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99758 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00115 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47142 * 60.00268 * 24 22 20 26 26 H 1.48506 * 109.46866 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47186 * 299.99679 * 24 22 20 28 28 H 1.09004 * 109.47191 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47240 * 299.99986 * 1 2 3 30 30 H 1.09003 * 109.47204 * 60.00355 * 1 2 3 31 31 H 1.08994 * 109.47289 * 239.99914 * 2 1 3 32 32 H 1.09003 * 109.47204 * 119.99645 * 2 1 3 33 33 H 1.09004 * 109.46942 * 59.99832 * 3 2 1 34 34 H 1.08998 * 109.46903 * 300.00380 * 3 2 1 35 35 H 1.09012 * 109.46843 * 329.99999 * 5 4 3 36 36 H 1.08992 * 109.47572 * 210.00165 * 5 4 3 37 37 H 1.08002 * 119.99072 * 0.02562 * 7 6 5 38 38 H 1.07999 * 119.97012 * 180.27779 * 8 7 6 39 39 H 1.08004 * 119.99046 * 179.97438 * 9 8 7 40 40 H 1.08000 * 120.01271 * 180.02562 * 10 9 8 41 41 H 0.96998 * 120.00451 * 0.02562 * 15 13 4 42 42 H 1.09001 * 109.47054 * 299.99948 * 16 15 13 43 43 H 1.08996 * 109.47329 * 59.99496 * 16 15 13 44 44 H 0.96995 * 120.00339 * 0.02562 * 19 17 16 45 45 H 0.96998 * 120.00145 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2381 1.4423 -1.2677 6 6 4.4894 2.8630 -1.7030 7 6 5.7517 3.4116 -1.5769 8 6 5.9839 4.7129 -1.9813 9 6 4.9525 5.4692 -2.5065 10 6 3.6883 4.9248 -2.6281 11 6 3.4545 3.6212 -2.2233 12 9 2.2189 3.0879 -2.3417 13 6 4.1784 1.4427 1.1681 14 8 5.3942 1.4432 1.1687 15 7 3.5039 1.4434 2.3350 16 6 4.2359 1.4442 3.6041 17 6 3.2561 1.4442 4.7491 18 8 2.0637 1.4441 4.5269 19 7 3.7048 1.4444 6.0200 20 6 2.8135 1.4449 7.0617 21 1 1.7517 1.4449 6.8639 22 6 3.2760 1.4446 8.3719 23 7 4.5680 1.4441 8.6126 24 14 2.0615 1.4446 9.7911 25 1 1.2075 0.2323 9.7119 26 1 2.8035 1.4448 11.0776 27 1 1.2082 2.6574 9.7124 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.6492 0.9283 -2.0276 36 1 5.1903 0.9285 -1.1369 37 1 6.5582 2.8218 -1.1667 38 1 6.9717 5.1392 -1.8866 39 1 5.1349 6.4859 -2.8218 40 1 2.8829 5.5156 -3.0387 41 1 2.5339 1.4434 2.3347 42 1 4.8625 0.5542 3.6626 43 1 4.8626 2.3341 3.6616 44 1 4.6584 1.4448 6.1977 45 1 4.8909 1.4435 9.5272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588747250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:57 Heat of formation + Delta-G solvation = -86.926865 kcal Electronic energy + Delta-G solvation = -29200.204342 eV Core-core repulsion = 24939.209393 eV Total energy + Delta-G solvation = -4260.994949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.19856 -40.28629 -39.07455 -38.19870 -36.24225 -34.56474 -33.85045 -33.19381 -31.56630 -31.31550 -30.66935 -27.92050 -26.75540 -25.55365 -24.22722 -22.98567 -22.02202 -21.76056 -19.66260 -19.54529 -18.36974 -17.90065 -17.67697 -16.73191 -16.44112 -16.24234 -15.66895 -15.53903 -15.34729 -14.83569 -14.60826 -14.44100 -14.38759 -14.16151 -14.01103 -13.61949 -13.49276 -13.37276 -13.14366 -12.68945 -12.40391 -12.19767 -12.06983 -11.92474 -11.86021 -11.61790 -11.57849 -11.39630 -11.18774 -11.09426 -10.74781 -10.49909 -10.30154 -9.96180 -9.61188 -9.20899 -8.97020 -8.85144 -8.60392 -8.45199 -8.08335 -6.49926 -3.91916 0.88834 1.00635 2.75190 3.14569 3.22128 3.25980 3.36855 3.45118 3.77024 4.01406 4.04159 4.19760 4.46858 4.52108 4.72661 4.83930 4.92195 4.93142 5.01477 5.05936 5.18754 5.22540 5.28053 5.37875 5.49081 5.59857 5.65522 5.75545 5.85852 5.89163 5.93717 5.95056 6.02871 6.06973 6.10079 6.13933 6.22078 6.22871 6.48958 6.67570 6.79472 7.06008 7.47141 7.93795 8.18560 8.47035 8.80421 9.06102 9.41210 9.89304 10.66984 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.002623 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.382342 B =10671.855432 C =11625.753037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.092 3.908 4 N -0.625 5.625 5 C 0.176 3.824 6 C -0.137 4.137 7 C -0.064 4.064 8 C -0.133 4.133 9 C -0.091 4.091 10 C -0.159 4.159 11 C 0.108 3.892 12 F -0.135 7.135 13 C 0.708 3.292 14 O -0.595 6.595 15 N -0.723 5.723 16 C 0.127 3.873 17 C 0.429 3.571 18 O -0.597 6.597 19 N -0.549 5.549 20 C -0.305 4.305 21 H 0.105 0.895 22 C 0.026 3.974 23 N -0.895 5.895 24 Si 0.933 3.067 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.407 0.593 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.396 0.604 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 3.384 -23.294 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C -0.031 4.031 4 N -0.361 5.361 5 C 0.052 3.948 6 C -0.139 4.139 7 C -0.083 4.083 8 C -0.151 4.151 9 C -0.109 4.109 10 C -0.178 4.178 11 C 0.088 3.912 12 F -0.114 7.114 13 C 0.409 3.591 14 O -0.474 6.474 15 N -0.382 5.382 16 C -0.001 4.001 17 C 0.215 3.785 18 O -0.484 6.484 19 N -0.184 5.184 20 C -0.434 4.434 21 H 0.122 0.878 22 C -0.177 4.177 23 N -0.535 5.535 24 Si 0.760 3.240 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.247 0.753 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.230 0.770 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.214 3.345 -23.181 23.422 hybrid contribution -0.684 0.021 0.945 1.166 sum -0.470 3.365 -22.236 22.494 Atomic orbital electron populations 1.21699 0.94984 1.02010 1.02120 1.21941 0.96372 0.97023 1.02694 1.21971 0.79310 0.97433 1.04393 1.47079 1.06083 1.78710 1.04200 1.20065 0.98746 0.91409 0.84559 1.20427 0.93451 0.98366 1.01690 1.21110 0.96079 0.95209 0.95907 1.21261 0.99687 0.94469 0.99678 1.21029 0.91984 0.99923 0.98006 1.21110 0.98871 0.94050 1.03784 1.17570 0.79743 0.92580 1.01282 1.91376 1.40156 1.86209 1.93643 1.15799 0.85173 0.77776 0.80330 1.90866 1.11437 1.58680 1.86413 1.44948 1.11055 1.78569 1.03614 1.20788 0.94022 1.03062 0.82244 1.19764 0.89152 0.85456 0.84157 1.90487 1.16525 1.57303 1.84094 1.41773 1.09979 1.62732 1.03912 1.19675 0.91385 1.48313 0.84058 0.87763 1.25317 0.96678 0.96828 0.98873 1.69610 1.12555 1.49348 1.22033 0.85879 0.79639 0.79142 0.79343 1.19788 1.20860 1.19792 0.92468 0.92075 0.92728 0.91824 0.91424 0.90530 0.88700 0.89592 0.88331 0.84453 0.85297 0.85169 0.84896 0.75333 0.90040 0.90111 0.77031 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.14 -1.55 6.26 -26.73 -0.17 -1.71 16 3 C 0.09 1.09 5.15 -4.04 -0.02 1.07 16 4 N -0.62 -8.39 2.46 -180.81 -0.44 -8.84 16 5 C 0.18 1.99 5.27 -5.20 -0.03 1.96 16 6 C -0.14 -1.54 5.47 -104.56 -0.57 -2.12 16 7 C -0.06 -0.69 9.67 -39.59 -0.38 -1.07 16 8 C -0.13 -1.20 10.04 -39.58 -0.40 -1.60 16 9 C -0.09 -0.76 10.04 -39.59 -0.40 -1.16 16 10 C -0.16 -1.48 10.03 -39.52 -0.40 -1.88 16 11 C 0.11 1.17 7.25 -39.42 -0.29 0.89 16 12 F -0.14 -1.47 13.80 2.25 0.03 -1.44 16 13 C 0.71 11.99 8.28 -86.91 -0.72 11.27 16 14 O -0.59 -11.40 15.92 5.29 0.08 -11.32 16 15 N -0.72 -12.86 5.39 -66.41 -0.36 -13.21 16 16 C 0.13 2.44 6.15 -5.19 -0.03 2.41 16 17 C 0.43 9.99 7.85 -10.99 -0.09 9.91 16 18 O -0.60 -15.43 15.24 5.55 0.08 -15.34 16 19 N -0.55 -13.74 5.29 -10.96 -0.06 -13.80 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 22 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 23 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 24 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.00 6.36 -51.93 -0.33 0.67 16 34 H 0.09 1.03 4.91 -51.93 -0.25 0.78 16 35 H 0.09 0.80 8.02 -51.92 -0.42 0.38 16 36 H 0.10 1.15 7.23 -51.93 -0.38 0.78 16 37 H 0.14 1.46 8.00 -52.49 -0.42 1.04 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 39 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.41 7.23 5.17 -40.82 -0.21 7.02 16 42 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 382.79 15.07 5.77 5.77 Total: -1.00 -31.54 382.79 -8.62 -40.16 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -6.07 Total: 16.74 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: -3.36 Total: 8.96 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.14 Total: -59.15 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: 0.17 Total: -26.66 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.03 Total: -1.44 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.54 -8.62 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588747250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.768 kcal (2) G-P(sol) polarization free energy of solvation -31.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds