Wall clock time and date at job start Tue Mar 31 2020 19:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 C 1.50710 * 109.47272 * 175.00070 * 5 3 2 7 7 C 1.38246 * 119.97221 * 269.73208 * 6 5 3 8 8 C 1.38194 * 120.02024 * 179.72607 * 7 6 5 9 9 C 1.38458 * 119.97758 * 0.57090 * 8 7 6 10 10 F 1.35103 * 120.02577 * 179.68630 * 9 8 7 11 11 C 1.38455 * 119.94492 * 359.69504 * 9 8 7 12 12 C 1.38191 * 119.97639 * 0.02562 * 11 9 8 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21586 * 119.99932 * 359.97438 * 14 13 3 16 16 N 1.34782 * 119.99655 * 180.02562 * 14 13 3 17 17 C 1.46508 * 119.99384 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.46625 * 179.97438 * 17 16 14 19 19 O 1.21296 * 120.00163 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99811 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00137 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99855 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00166 * 179.97438 * 21 20 18 24 24 N 1.31401 * 119.99830 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99959 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47312 * 90.00031 * 25 23 21 27 27 H 1.48502 * 109.46742 * 210.00241 * 25 23 21 28 28 H 1.48501 * 109.46980 * 330.00000 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09001 * 109.47310 * 295.00266 * 5 3 2 35 35 H 1.09002 * 109.47223 * 55.00225 * 5 3 2 36 36 H 1.08002 * 119.98591 * 359.97064 * 7 6 5 37 37 H 1.08005 * 120.01218 * 180.24585 * 8 7 6 38 38 H 1.08008 * 120.01166 * 180.02562 * 11 9 8 39 39 H 1.08010 * 119.98934 * 179.97438 * 12 11 9 40 40 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 41 41 H 0.96996 * 120.00288 * 359.97438 * 16 14 13 42 42 H 1.09001 * 109.46870 * 299.99537 * 17 16 14 43 43 H 1.08995 * 109.47359 * 60.00109 * 17 16 14 44 44 H 0.96997 * 120.00223 * 359.97438 * 20 18 17 45 45 H 0.97003 * 120.00081 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 6 4.0571 2.8633 -0.2492 7 6 4.1898 3.4421 -1.4976 8 6 4.6357 4.7451 -1.6117 9 6 4.9608 5.4671 -0.4758 10 9 5.4028 6.7389 -0.5866 11 6 4.8326 4.8844 0.7736 12 6 4.3811 3.5832 0.8856 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3411 2.6326 0.4318 16 7 0.0789 3.2674 2.5185 17 6 -1.2446 3.8831 2.6438 18 6 -1.3913 4.4830 4.0185 19 8 -0.4802 4.4035 4.8153 20 7 -2.5352 5.1068 4.3629 21 6 -2.6686 5.6530 5.6133 22 1 -1.8570 5.5830 6.3225 23 6 -3.8478 6.2967 5.9682 24 7 -4.8349 6.3823 5.1051 25 14 -4.0291 7.0415 7.6717 26 1 -3.5589 8.4499 7.6488 27 1 -5.4565 7.0027 8.0794 28 1 -3.2161 6.2638 8.6410 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 4.0030 0.9834 0.7597 35 1 3.8571 0.8799 -1.0113 36 1 3.9412 2.8770 -2.3838 37 1 4.7355 5.1985 -2.5869 38 1 5.0855 5.4467 1.6604 39 1 4.2814 3.1283 1.8602 40 1 2.2720 2.1231 1.9978 41 1 0.6984 3.2930 3.2644 42 1 -1.3541 4.6650 1.8922 43 1 -2.0136 3.1253 2.4945 44 1 -3.2639 5.1701 3.7259 45 1 -5.6583 6.8314 5.3530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595681384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:11 Heat of formation + Delta-G solvation = -101.055211 kcal Electronic energy + Delta-G solvation = -28602.103600 eV Core-core repulsion = 24340.496000 eV Total energy + Delta-G solvation = -4261.607600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.06662 -40.31435 -39.31525 -38.25356 -36.43219 -34.36955 -33.64883 -32.34477 -32.12579 -31.39046 -31.32867 -28.40151 -27.21078 -24.57298 -24.04396 -23.34954 -21.61933 -21.23097 -20.50039 -19.56882 -18.41151 -17.91869 -17.88829 -16.75713 -16.29161 -16.03859 -15.76478 -15.62660 -15.45586 -14.90263 -14.59814 -14.41815 -14.31494 -13.94567 -13.90779 -13.84563 -13.64075 -13.39265 -13.22372 -12.75683 -12.61117 -12.16275 -12.14538 -11.96799 -11.69459 -11.62518 -11.38679 -11.24895 -11.13062 -11.10948 -10.84978 -10.45611 -10.31240 -9.91453 -9.62685 -9.37530 -9.04603 -8.76607 -8.61160 -8.56731 -8.09028 -6.50595 -3.92546 0.87439 0.97482 2.84556 3.12177 3.22488 3.27825 3.29870 3.45376 3.76676 4.04096 4.09510 4.31451 4.39422 4.46986 4.61682 4.69736 4.85713 4.92026 4.97467 5.04477 5.07959 5.18298 5.27386 5.37858 5.44952 5.61426 5.66816 5.78869 5.85604 5.87726 5.93950 5.96687 5.98249 6.02799 6.09898 6.15739 6.21746 6.49520 6.60720 6.63469 6.80410 7.13086 7.46691 7.93425 8.27816 8.46329 8.85464 9.05638 9.40751 9.88650 10.66360 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.002594 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.513193 B =10789.785496 C =12567.679398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.170 3.830 4 H 0.091 0.909 5 C -0.089 4.089 6 C -0.089 4.089 7 C -0.087 4.087 8 C -0.152 4.152 9 C 0.092 3.908 10 F -0.142 7.142 11 C -0.148 4.148 12 C -0.083 4.083 13 N -0.742 5.742 14 C 0.706 3.294 15 O -0.592 6.592 16 N -0.726 5.726 17 C 0.130 3.870 18 C 0.429 3.571 19 O -0.598 6.598 20 N -0.550 5.550 21 C -0.305 4.305 22 H 0.105 0.895 23 C 0.026 3.974 24 N -0.895 5.895 25 Si 0.933 3.067 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.269 1.269 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.392 0.608 41 H 0.405 0.595 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.396 0.604 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.876 -10.183 -13.309 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.064 3.936 4 H 0.109 0.891 5 C -0.127 4.127 6 C -0.089 4.089 7 C -0.105 4.105 8 C -0.170 4.170 9 C 0.073 3.927 10 F -0.120 7.120 11 C -0.167 4.167 12 C -0.101 4.101 13 N -0.398 5.398 14 C 0.406 3.594 15 O -0.471 6.471 16 N -0.383 5.383 17 C 0.001 3.999 18 C 0.215 3.785 19 O -0.485 6.485 20 N -0.184 5.184 21 C -0.434 4.434 22 H 0.123 0.877 23 C -0.177 4.177 24 N -0.535 5.535 25 Si 0.759 3.241 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.193 1.193 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.226 0.774 41 H 0.242 0.758 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.230 0.770 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.542 -10.100 -13.612 24.393 hybrid contribution -0.033 0.853 1.152 1.434 sum 17.509 -9.247 -12.459 23.395 Atomic orbital electron populations 1.21777 0.94489 1.00205 1.03635 1.21984 0.97587 0.95826 1.01843 1.20831 0.92327 0.93122 0.87318 0.89125 1.20955 0.94855 0.92804 1.04038 1.19856 0.99397 0.96587 0.93096 1.20893 0.98039 0.94135 0.97478 1.21132 1.02554 0.95425 0.97933 1.17749 1.00434 0.79781 0.94703 1.91503 1.86997 1.36565 1.96973 1.21181 1.02586 0.96509 0.96445 1.20883 0.97308 0.93310 0.98561 1.45104 1.16087 1.61740 1.16857 1.15799 0.82107 0.78331 0.83174 1.90909 1.51861 1.65315 1.38970 1.44785 1.18277 1.60004 1.15247 1.20754 0.84268 0.97960 0.96883 1.19784 0.84698 0.85186 0.88881 1.90487 1.40839 1.64422 1.52758 1.41787 1.13740 1.47962 1.14945 1.19721 1.01302 1.31939 0.90468 0.87720 1.25318 0.95090 0.97421 0.99881 1.69612 1.05467 1.42948 1.35462 0.85823 0.77493 0.79314 0.81455 1.20275 1.20802 1.19329 0.92178 0.91963 0.94001 0.91965 0.91415 0.90088 0.89093 0.85018 0.84852 0.84659 0.85202 0.77378 0.75785 0.90147 0.90129 0.77035 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.51 37.16 0.32 -1.37 16 2 C -0.13 -1.15 5.61 -26.74 -0.15 -1.30 16 3 C 0.17 1.53 2.24 -67.93 -0.15 1.38 16 4 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 5 C -0.09 -0.55 4.89 -27.88 -0.14 -0.69 16 6 C -0.09 -0.72 4.95 -104.61 -0.52 -1.24 16 7 C -0.09 -0.71 9.70 -39.59 -0.38 -1.10 16 8 C -0.15 -1.40 10.03 -39.52 -0.40 -1.80 16 9 C 0.09 1.00 7.30 -39.42 -0.29 0.71 16 10 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 11 C -0.15 -1.47 10.03 -39.52 -0.40 -1.86 16 12 C -0.08 -0.71 9.09 -39.60 -0.36 -1.07 16 13 N -0.74 -7.99 4.48 -58.68 -0.26 -8.25 16 14 C 0.71 10.72 7.13 -86.91 -0.62 10.10 16 15 O -0.59 -10.67 13.48 5.29 0.07 -10.60 16 16 N -0.73 -11.85 5.53 -66.41 -0.37 -12.21 16 17 C 0.13 2.40 6.15 -5.19 -0.03 2.37 16 18 C 0.43 9.81 7.85 -10.98 -0.09 9.72 16 19 O -0.60 -15.19 15.24 5.54 0.08 -15.10 16 20 N -0.55 -13.64 5.29 -10.96 -0.06 -13.70 16 21 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 22 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 23 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 24 N -0.89 -23.96 13.05 55.50 0.72 -23.23 16 25 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 29 H 0.06 0.78 7.84 -51.93 -0.41 0.37 16 30 H 0.06 0.90 5.64 -51.93 -0.29 0.60 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.09 0.42 8.08 -51.93 -0.42 0.00 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 39 H 0.13 0.87 7.57 -52.48 -0.40 0.47 16 40 H 0.39 3.42 7.84 -40.82 -0.32 3.10 16 41 H 0.41 6.46 7.45 -40.82 -0.30 6.16 16 42 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 43 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.40 9.48 7.90 -40.82 -0.32 9.16 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -32.11 382.23 -8.65 -40.76 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -6.17 Total: 16.70 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -3.44 Total: 6.00 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.04 Total: -57.40 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: 0.16 Total: -25.70 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.11 -8.65 -40.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595681384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.298 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds