Wall clock time and date at job start Tue Mar 31 2020 19:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 C 1.50710 * 109.47272 * 175.00070 * 5 3 2 7 7 C 1.38246 * 119.97221 * 269.73208 * 6 5 3 8 8 C 1.38194 * 120.02024 * 179.72607 * 7 6 5 9 9 C 1.38458 * 119.97758 * 0.57090 * 8 7 6 10 10 F 1.35103 * 120.02577 * 179.68630 * 9 8 7 11 11 C 1.38455 * 119.94492 * 359.69504 * 9 8 7 12 12 C 1.38191 * 119.97639 * 0.02562 * 11 9 8 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21586 * 119.99932 * 359.97438 * 14 13 3 16 16 N 1.34782 * 119.99655 * 180.02562 * 14 13 3 17 17 C 1.46508 * 119.99384 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.46625 * 179.97438 * 17 16 14 19 19 O 1.21296 * 120.00163 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99811 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00137 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99855 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00166 * 179.97438 * 21 20 18 24 24 N 1.31401 * 119.99830 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99959 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47312 * 90.00031 * 25 23 21 27 27 H 1.48502 * 109.46742 * 210.00241 * 25 23 21 28 28 H 1.48501 * 109.46980 * 330.00000 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09001 * 109.47310 * 295.00266 * 5 3 2 35 35 H 1.09002 * 109.47223 * 55.00225 * 5 3 2 36 36 H 1.08002 * 119.98591 * 359.97064 * 7 6 5 37 37 H 1.08005 * 120.01218 * 180.24585 * 8 7 6 38 38 H 1.08008 * 120.01166 * 180.02562 * 11 9 8 39 39 H 1.08010 * 119.98934 * 179.97438 * 12 11 9 40 40 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 41 41 H 0.96996 * 120.00288 * 359.97438 * 16 14 13 42 42 H 1.09001 * 109.46870 * 299.99537 * 17 16 14 43 43 H 1.08995 * 109.47359 * 60.00109 * 17 16 14 44 44 H 0.96997 * 120.00223 * 359.97438 * 20 18 17 45 45 H 0.97003 * 120.00081 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 6 4.0571 2.8633 -0.2492 7 6 4.1898 3.4421 -1.4976 8 6 4.6357 4.7451 -1.6117 9 6 4.9608 5.4671 -0.4758 10 9 5.4028 6.7389 -0.5866 11 6 4.8326 4.8844 0.7736 12 6 4.3811 3.5832 0.8856 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3411 2.6326 0.4318 16 7 0.0789 3.2674 2.5185 17 6 -1.2446 3.8831 2.6438 18 6 -1.3913 4.4830 4.0185 19 8 -0.4802 4.4035 4.8153 20 7 -2.5352 5.1068 4.3629 21 6 -2.6686 5.6530 5.6133 22 1 -1.8570 5.5830 6.3225 23 6 -3.8478 6.2967 5.9682 24 7 -4.8349 6.3823 5.1051 25 14 -4.0291 7.0415 7.6717 26 1 -3.5589 8.4499 7.6488 27 1 -5.4565 7.0027 8.0794 28 1 -3.2161 6.2638 8.6410 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 4.0030 0.9834 0.7597 35 1 3.8571 0.8799 -1.0113 36 1 3.9412 2.8770 -2.3838 37 1 4.7355 5.1985 -2.5869 38 1 5.0855 5.4467 1.6604 39 1 4.2814 3.1283 1.8602 40 1 2.2720 2.1231 1.9978 41 1 0.6984 3.2930 3.2644 42 1 -1.3541 4.6650 1.8922 43 1 -2.0136 3.1253 2.4945 44 1 -3.2639 5.1701 3.7259 45 1 -5.6583 6.8314 5.3530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595681384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:10 Heat of formation + Delta-G solvation = -122.583006 kcal Electronic energy + Delta-G solvation = -28603.037116 eV Core-core repulsion = 24340.496000 eV Total energy + Delta-G solvation = -4262.541116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.90446 -41.38452 -40.31524 -39.84200 -37.37774 -36.17731 -35.18600 -33.43219 -33.11550 -32.95257 -32.04342 -29.44440 -28.52383 -26.34866 -24.88728 -24.02353 -22.48803 -22.08308 -21.47728 -21.29918 -20.11031 -19.48979 -18.63802 -17.65212 -17.34906 -17.20532 -17.02001 -16.60853 -16.52258 -16.46056 -16.12221 -15.83944 -15.37273 -15.15492 -15.03624 -14.66234 -14.48736 -14.39521 -14.27212 -13.91520 -13.58353 -13.53970 -13.41855 -13.32650 -12.90492 -12.75588 -12.47054 -12.45142 -12.18099 -12.12529 -11.91806 -11.81577 -11.66554 -11.56366 -11.16976 -10.53880 -10.21807 -10.09203 -10.03723 -9.73156 -9.45499 -8.50621 -6.00738 0.16979 0.30915 1.36560 1.42422 1.54813 1.72221 1.91289 2.26823 2.29189 2.62059 3.08551 3.16820 3.32977 3.41010 3.71847 3.79197 3.95817 4.03456 4.22927 4.25865 4.32684 4.36678 4.38737 4.45610 4.48786 4.61559 4.71511 4.85299 4.94953 5.02315 5.11916 5.15699 5.18525 5.20335 5.29901 5.32767 5.36183 5.40676 5.54843 5.60237 5.76136 5.92832 5.96778 6.06916 6.48912 7.04099 7.14394 7.44637 7.67916 7.95437 8.66421 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.002594 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.513193 B =10789.785496 C =12567.679398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.078 4.078 6 C -0.090 4.090 7 C -0.090 4.090 8 C -0.160 4.160 9 C 0.062 3.938 10 F -0.156 7.156 11 C -0.164 4.164 12 C -0.089 4.089 13 N -0.725 5.725 14 C 0.705 3.295 15 O -0.622 6.622 16 N -0.728 5.728 17 C 0.145 3.855 18 C 0.434 3.566 19 O -0.623 6.623 20 N -0.561 5.561 21 C -0.337 4.337 22 H 0.086 0.914 23 C -0.011 4.011 24 N -0.917 5.917 25 Si 0.996 3.004 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.269 1.269 29 H 0.040 0.960 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.157 0.843 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.149 0.851 40 H 0.405 0.595 41 H 0.408 0.592 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.398 0.602 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.841 -11.855 -13.589 26.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C 0.064 3.936 4 H 0.087 0.913 5 C -0.115 4.115 6 C -0.091 4.091 7 C -0.108 4.108 8 C -0.179 4.179 9 C 0.043 3.957 10 F -0.135 7.135 11 C -0.183 4.183 12 C -0.107 4.107 13 N -0.381 5.381 14 C 0.405 3.595 15 O -0.503 6.503 16 N -0.386 5.386 17 C 0.016 3.984 18 C 0.221 3.779 19 O -0.511 6.511 20 N -0.196 5.196 21 C -0.466 4.466 22 H 0.104 0.896 23 C -0.212 4.212 24 N -0.557 5.557 25 Si 0.819 3.181 26 H -0.196 1.196 27 H -0.197 1.197 28 H -0.193 1.193 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.175 0.825 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.167 0.833 40 H 0.241 0.759 41 H 0.245 0.755 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.232 0.768 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.548 -11.796 -13.911 26.014 hybrid contribution -0.304 1.308 1.171 1.782 sum 18.245 -10.487 -12.741 24.600 Atomic orbital electron populations 1.21727 0.97076 1.00015 1.01159 1.21962 0.95057 0.95676 1.03873 1.20975 0.94276 0.92921 0.85445 0.91307 1.20967 0.92182 0.91913 1.06470 1.20145 0.98582 0.97515 0.92808 1.21255 0.97093 0.93745 0.98659 1.21380 1.02444 0.96064 0.98008 1.18109 1.02047 0.79682 0.95836 1.91457 1.87409 1.37565 1.97090 1.21367 1.03228 0.97432 0.96298 1.21178 0.96828 0.92803 0.99846 1.45068 1.14560 1.60428 1.18080 1.15918 0.83111 0.78257 0.82223 1.90894 1.53149 1.66436 1.39779 1.44716 1.17477 1.60463 1.15949 1.20503 0.85914 0.98178 0.93816 1.20451 0.83566 0.83778 0.90084 1.90462 1.41507 1.64996 1.54134 1.41842 1.14499 1.48694 1.14573 1.19735 1.01599 1.33873 0.91384 0.89561 1.26124 0.94354 0.97211 1.03463 1.69680 1.05833 1.43198 1.36991 0.84879 0.77806 0.78464 0.76909 1.19632 1.19654 1.19349 0.94053 0.95002 0.93032 0.90598 0.88613 0.87922 0.86317 0.82548 0.83760 0.84554 0.83320 0.75889 0.75504 0.89604 0.89327 0.76782 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 71.98 0.61 -2.54 16 2 C -0.13 -1.78 5.61 30.59 0.17 -1.60 16 3 C 0.17 2.57 2.24 44.99 0.10 2.67 16 4 H 0.07 1.41 7.58 -2.39 -0.02 1.40 16 5 C -0.08 -0.64 4.89 29.85 0.15 -0.50 16 6 C -0.09 -1.21 4.95 -19.86 -0.10 -1.31 16 7 C -0.09 -1.26 9.70 22.26 0.22 -1.05 16 8 C -0.16 -2.85 10.03 22.31 0.22 -2.62 16 9 C 0.06 1.36 7.30 22.37 0.16 1.52 16 10 F -0.16 -3.89 17.27 44.97 0.78 -3.12 16 11 C -0.16 -3.22 10.03 22.31 0.22 -3.00 16 12 C -0.09 -1.36 9.09 22.26 0.20 -1.16 16 13 N -0.73 -14.20 4.48 -457.82 -2.05 -16.25 16 14 C 0.70 20.83 7.13 179.05 1.28 22.11 16 15 O -0.62 -22.28 13.48 -3.99 -0.05 -22.34 16 16 N -0.73 -23.41 5.53 -482.27 -2.67 -26.08 16 17 C 0.14 5.35 6.15 85.63 0.53 5.88 16 18 C 0.43 20.08 7.85 87.66 0.69 20.76 16 19 O -0.62 -31.96 15.24 -3.08 -0.05 -32.01 16 20 N -0.56 -28.34 5.29 -306.98 -1.62 -29.96 16 21 C -0.34 -18.61 9.68 84.04 0.81 -17.80 16 22 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 23 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 24 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 25 Si 1.00 41.91 29.55 68.60 2.03 43.94 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 H 0.04 1.05 7.84 -2.39 -0.02 1.03 16 30 H 0.03 0.89 5.64 -2.39 -0.01 0.88 16 31 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 0.50 8.09 -2.39 -0.02 0.48 16 35 H 0.12 0.44 8.08 -2.39 -0.02 0.42 16 36 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 39 H 0.15 1.61 7.57 -2.91 -0.02 1.59 16 40 H 0.41 6.02 7.84 -92.71 -0.73 5.29 16 41 H 0.41 12.75 7.45 -92.71 -0.69 12.06 16 42 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.40 19.45 7.90 -92.71 -0.73 18.71 16 45 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -70.86 382.23 1.28 -69.59 By element: Atomic # 1 Polarization: 44.85 SS G_CDS: -1.10 Total: 43.76 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: 5.73 Total: 21.25 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -6.06 Total: -121.07 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -0.10 Total: -54.34 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.12 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -70.86 1.28 -69.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595681384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.998 kcal (2) G-P(sol) polarization free energy of solvation -70.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds