Wall clock time and date at job start Tue Mar 31 2020 19:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46822 * 2 1 4 4 H 1.09002 * 109.46824 * 55.00360 * 3 2 1 5 5 C 1.53000 * 109.46846 * 174.99943 * 3 2 1 6 6 C 1.50703 * 109.46912 * 185.00257 * 5 3 2 7 7 C 1.38248 * 119.97052 * 269.72758 * 6 5 3 8 8 C 1.38206 * 120.02070 * 179.72413 * 7 6 5 9 9 C 1.38459 * 119.97516 * 0.57388 * 8 7 6 10 10 F 1.35092 * 120.02804 * 179.67826 * 9 8 7 11 11 C 1.38466 * 119.94783 * 359.69871 * 9 8 7 12 12 C 1.38201 * 119.97134 * 0.02562 * 11 9 8 13 13 N 1.46498 * 109.47107 * 295.00185 * 3 2 1 14 14 C 1.34775 * 119.99962 * 85.00055 * 13 3 2 15 15 O 1.21587 * 119.99912 * 0.02562 * 14 13 3 16 16 N 1.34780 * 119.99894 * 179.97438 * 14 13 3 17 17 C 1.46502 * 119.99520 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46715 * 180.02562 * 17 16 14 19 19 O 1.21292 * 119.99801 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00248 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00406 * 179.97438 * 20 18 17 22 22 H 1.08006 * 119.99921 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00341 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99750 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00224 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.46957 * 60.00050 * 25 23 21 27 27 H 1.48503 * 109.46942 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46897 * 299.99781 * 25 23 21 29 29 H 1.09004 * 109.47264 * 299.99443 * 1 2 3 30 30 H 1.08998 * 109.47289 * 59.99980 * 1 2 3 31 31 H 1.09002 * 109.46611 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47264 * 240.00557 * 2 1 3 33 33 H 1.08998 * 109.47289 * 120.00020 * 2 1 3 34 34 H 1.09002 * 109.47398 * 305.00335 * 5 3 2 35 35 H 1.09001 * 109.47194 * 65.00515 * 5 3 2 36 36 H 1.07993 * 119.98843 * 359.97438 * 7 6 5 37 37 H 1.07997 * 120.00870 * 180.25174 * 8 7 6 38 38 H 1.07995 * 120.01164 * 179.97438 * 11 9 8 39 39 H 1.08001 * 119.98533 * 179.97438 * 12 11 9 40 40 H 0.96998 * 119.99659 * 264.99982 * 13 3 2 41 41 H 0.96998 * 119.99727 * 0.02562 * 16 14 13 42 42 H 1.08993 * 109.47669 * 300.00256 * 17 16 14 43 43 H 1.09000 * 109.47236 * 60.00947 * 17 16 14 44 44 H 0.97000 * 119.99910 * 0.02562 * 20 18 17 45 45 H 0.97000 * 119.99841 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5647 1.4444 0.1257 6 6 4.0568 2.8635 0.2493 7 6 4.3859 3.5816 -0.8852 8 6 4.8319 4.8850 -0.7735 9 6 4.9603 5.4674 0.4761 10 9 5.4024 6.7391 0.5869 11 6 4.6358 4.7452 1.6120 12 6 4.1847 3.4439 1.4974 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3413 2.6326 -0.4316 16 7 0.0785 3.2674 -2.5183 17 6 -1.2449 3.8831 -2.6435 18 6 -1.3918 4.4829 -4.0182 19 8 -0.4804 4.4043 -4.8147 20 7 -2.5354 5.1076 -4.3622 21 6 -2.6688 5.6538 -5.6126 22 1 -1.8576 5.5831 -6.3221 23 6 -3.8476 6.2983 -5.9671 24 7 -4.8344 6.3847 -5.1036 25 14 -4.0297 7.0419 -7.6710 26 1 -3.8817 5.9762 -8.6945 27 1 -5.3705 7.6675 -7.7974 28 1 -2.9813 8.0736 -7.8755 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 3.8570 0.8801 1.0113 35 1 4.0029 0.9838 -0.7597 36 1 4.2906 3.1254 -1.8594 37 1 5.0850 5.4471 -1.6602 38 1 4.7360 5.1983 2.5872 39 1 3.9319 2.8803 2.3833 40 1 2.2718 2.1232 -1.9977 41 1 0.6980 3.2931 -3.2643 42 1 -2.0139 3.1252 -2.4942 43 1 -1.3545 4.6649 -1.8920 44 1 -3.2638 5.1715 -3.7249 45 1 -5.6572 6.8350 -5.3509 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595681385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:14 Heat of formation + Delta-G solvation = -101.012715 kcal Electronic energy + Delta-G solvation = -28601.747213 eV Core-core repulsion = 24340.141456 eV Total energy + Delta-G solvation = -4261.605758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.06869 -40.31339 -39.31414 -38.25291 -36.43112 -34.36867 -33.64804 -32.34487 -32.12498 -31.38948 -31.32737 -28.40076 -27.20995 -24.57216 -24.04348 -23.34972 -21.61889 -21.23055 -20.49973 -19.56772 -18.41096 -17.91835 -17.88776 -16.75815 -16.28965 -16.03855 -15.76517 -15.62573 -15.45565 -14.90056 -14.59686 -14.42036 -14.31561 -13.94727 -13.90788 -13.84493 -13.64072 -13.39049 -13.22293 -12.75716 -12.61247 -12.16009 -12.14250 -11.96736 -11.69479 -11.62239 -11.38623 -11.24996 -11.12202 -11.09496 -10.84967 -10.50324 -10.30684 -9.91410 -9.61647 -9.37444 -9.04555 -8.76546 -8.61094 -8.56670 -8.08898 -6.50389 -3.92472 0.87475 0.97474 2.84614 3.14249 3.21943 3.25887 3.29861 3.45421 3.76800 4.04161 4.09568 4.31514 4.39483 4.47057 4.61723 4.69781 4.85763 4.92106 4.97513 5.04477 5.07968 5.18364 5.27415 5.37924 5.44962 5.61482 5.66847 5.78912 5.85634 5.87748 5.94023 5.96667 5.98269 6.02880 6.09987 6.15775 6.21783 6.49550 6.60772 6.63514 6.80493 7.13143 7.46608 7.93289 8.27863 8.46451 8.85515 9.05623 9.40774 9.88740 10.66488 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.002595 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.955303 B =10789.359361 C =12566.983453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.170 3.830 4 H 0.091 0.909 5 C -0.089 4.089 6 C -0.089 4.089 7 C -0.083 4.083 8 C -0.148 4.148 9 C 0.092 3.908 10 F -0.142 7.142 11 C -0.152 4.152 12 C -0.087 4.087 13 N -0.742 5.742 14 C 0.706 3.294 15 O -0.592 6.592 16 N -0.726 5.726 17 C 0.130 3.870 18 C 0.429 3.571 19 O -0.598 6.598 20 N -0.549 5.549 21 C -0.306 4.306 22 H 0.104 0.896 23 C 0.026 3.974 24 N -0.895 5.895 25 Si 0.933 3.067 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.393 0.607 41 H 0.405 0.595 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.396 0.604 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.857 -10.172 13.306 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.064 3.936 4 H 0.109 0.891 5 C -0.127 4.127 6 C -0.089 4.089 7 C -0.101 4.101 8 C -0.167 4.167 9 C 0.073 3.927 10 F -0.120 7.120 11 C -0.170 4.170 12 C -0.105 4.105 13 N -0.398 5.398 14 C 0.406 3.594 15 O -0.471 6.471 16 N -0.383 5.383 17 C 0.001 3.999 18 C 0.214 3.786 19 O -0.485 6.485 20 N -0.184 5.184 21 C -0.435 4.435 22 H 0.122 0.878 23 C -0.177 4.177 24 N -0.535 5.535 25 Si 0.760 3.240 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.198 1.198 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.226 0.774 41 H 0.242 0.758 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.230 0.770 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.519 -10.082 13.613 24.370 hybrid contribution -0.025 0.841 -1.162 1.435 sum 17.494 -9.241 12.451 23.377 Atomic orbital electron populations 1.21777 0.94490 1.00204 1.03635 1.21987 0.97587 0.95827 1.01841 1.20833 0.92325 0.93121 0.87320 0.89124 1.20954 0.94857 0.92805 1.04037 1.19855 0.99387 0.96590 0.93103 1.20888 0.97339 0.93287 0.98557 1.21184 1.02616 0.96476 0.96443 1.17750 1.00439 0.79780 0.94698 1.91500 1.86995 1.36570 1.96970 1.21134 1.02526 0.95456 0.97929 1.20891 0.98011 0.94157 0.97481 1.45099 1.16084 1.61743 1.16855 1.15799 0.82107 0.78331 0.83175 1.90910 1.51866 1.65315 1.38968 1.44783 1.18274 1.60004 1.15248 1.20751 0.84266 0.97962 0.96883 1.19782 0.84704 0.85196 0.88882 1.90485 1.40806 1.64451 1.52779 1.41780 1.13786 1.47911 1.14925 1.19672 1.01339 1.32005 0.90478 0.87770 1.25317 0.95088 0.97406 0.99871 1.69609 1.05506 1.42919 1.35479 0.85881 0.77426 0.79256 0.81450 1.19789 1.20853 1.19785 0.92172 0.91968 0.94003 0.91966 0.91413 0.89092 0.90088 0.85200 0.84660 0.84852 0.85020 0.77378 0.75785 0.90132 0.90148 0.77031 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.51 37.16 0.32 -1.37 16 2 C -0.13 -1.15 5.61 -26.73 -0.15 -1.30 16 3 C 0.17 1.53 2.24 -67.93 -0.15 1.38 16 4 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 5 C -0.09 -0.55 4.89 -27.88 -0.14 -0.69 16 6 C -0.09 -0.72 4.95 -104.62 -0.52 -1.24 16 7 C -0.08 -0.71 9.10 -39.59 -0.36 -1.07 16 8 C -0.15 -1.47 10.03 -39.51 -0.40 -1.86 16 9 C 0.09 1.00 7.30 -39.42 -0.29 0.71 16 10 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 11 C -0.15 -1.40 10.03 -39.51 -0.40 -1.80 16 12 C -0.09 -0.71 9.70 -39.60 -0.38 -1.10 16 13 N -0.74 -7.99 4.49 -58.67 -0.26 -8.26 16 14 C 0.71 10.72 7.13 -86.92 -0.62 10.10 16 15 O -0.59 -10.67 13.48 5.29 0.07 -10.60 16 16 N -0.73 -11.85 5.53 -66.41 -0.37 -12.22 16 17 C 0.13 2.40 6.15 -5.19 -0.03 2.37 16 18 C 0.43 9.81 7.85 -10.99 -0.09 9.72 16 19 O -0.60 -15.19 15.24 5.55 0.08 -15.11 16 20 N -0.55 -13.64 5.29 -10.96 -0.06 -13.70 16 21 C -0.31 -8.31 9.68 -14.94 -0.14 -8.46 16 22 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 23 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 24 N -0.89 -23.98 13.05 55.50 0.72 -23.25 16 25 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 29 H 0.06 0.78 7.84 -51.93 -0.41 0.37 16 30 H 0.06 0.90 5.64 -51.93 -0.29 0.60 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.08 0.40 8.08 -51.93 -0.42 -0.01 16 36 H 0.13 0.87 7.59 -52.49 -0.40 0.47 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.39 3.43 7.86 -40.82 -0.32 3.11 16 41 H 0.41 6.46 7.45 -40.82 -0.30 6.16 16 42 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -32.09 382.29 -8.65 -40.74 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -6.17 Total: 16.74 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -3.44 Total: 5.99 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.04 Total: -57.43 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: 0.16 Total: -25.71 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.09 -8.65 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595681385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.270 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds