Wall clock time and date at job start Tue Mar 31 2020 19:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46904 * 109.47224 * 96.89236 * 3 2 1 5 5 C 1.46894 * 111.00078 * 189.99653 * 4 3 2 6 6 C 1.53242 * 109.34045 * 187.24940 * 5 4 3 7 7 N 1.47072 * 108.52238 * 306.17331 * 6 5 4 8 8 C 1.34779 * 120.88455 * 231.18531 * 7 6 5 9 9 O 1.21672 * 119.99609 * 8.20488 * 8 7 6 10 10 C 1.46885 * 120.00459 * 188.20698 * 8 7 6 11 11 C 1.36125 * 125.43623 * 25.99118 * 10 8 7 12 12 C 1.41699 * 107.75088 * 179.97438 * 11 10 8 13 13 C 1.40018 * 133.35688 * 179.97438 * 12 11 10 14 14 C 1.36573 * 119.83270 * 180.02562 * 13 12 11 15 15 C 1.38857 * 120.60377 * 0.02798 * 14 13 12 16 16 C 1.37847 * 120.62876 * 359.97438 * 15 14 13 17 17 C 1.39084 * 119.81360 * 359.73303 * 16 15 14 18 18 N 1.37840 * 133.15691 * 179.59221 * 17 16 15 19 19 C 1.36891 * 125.62091 * 0.74542 * 18 17 16 20 20 H 1.08001 * 119.99849 * 136.46079 * 19 18 17 21 21 C 1.39017 * 120.00057 * 316.46441 * 19 18 17 22 22 N 1.31348 * 119.99947 * 158.14701 * 21 19 18 23 23 Si 1.86799 * 120.00025 * 338.14388 * 21 19 18 24 24 H 1.48502 * 109.47216 * 95.99451 * 23 21 19 25 25 H 1.48499 * 109.47158 * 216.00276 * 23 21 19 26 26 H 1.48508 * 109.46773 * 336.00043 * 23 21 19 27 27 C 1.47084 * 118.23921 * 51.45215 * 7 6 5 28 28 C 1.46904 * 110.99751 * 314.29624 * 4 3 2 29 29 H 4.40887 * 5.52070 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.47674 * 336.88818 * 3 2 1 31 31 H 1.09004 * 109.47099 * 216.88492 * 3 2 1 32 32 H 1.09008 * 109.49560 * 67.29350 * 5 4 3 33 33 H 1.08995 * 109.49821 * 307.21141 * 5 4 3 34 34 H 1.09002 * 109.63114 * 186.45821 * 6 5 4 35 35 H 1.09005 * 109.62632 * 65.88380 * 6 5 4 36 36 H 1.07995 * 126.12085 * 359.97438 * 11 10 8 37 37 H 1.08006 * 120.07894 * 359.97438 * 13 12 11 38 38 H 1.08004 * 119.69661 * 180.02562 * 14 13 12 39 39 H 1.07997 * 119.68525 * 180.02562 * 15 14 13 40 40 H 1.08001 * 120.09075 * 180.02562 * 16 15 14 41 41 H 0.97002 * 119.99839 * 180.02562 * 22 21 19 42 42 H 1.09001 * 109.62580 * 68.25512 * 27 7 6 43 43 H 1.09003 * 109.63139 * 188.83151 * 27 7 6 44 44 H 1.08997 * 109.49432 * 292.70939 * 28 4 3 45 45 H 1.09002 * 109.49202 * 52.78726 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 0.1671 -1.3750 5 6 4.5845 -0.0631 -1.4494 6 6 5.0838 0.2949 -2.8532 7 7 4.2845 -0.4502 -3.8375 8 6 4.8793 -1.1796 -4.8022 9 8 6.0837 -1.3506 -4.7801 10 6 4.0737 -1.7679 -5.8804 11 6 2.8790 -1.2895 -6.3240 12 6 2.4346 -2.1383 -7.3680 13 6 1.2969 -2.1435 -8.1842 14 6 1.1424 -3.1182 -9.1282 15 6 2.1041 -4.1072 -9.2871 16 6 3.2325 -4.1232 -8.4955 17 6 3.4149 -3.1374 -7.5314 18 7 4.4082 -2.8951 -6.6070 19 6 5.5415 -3.6443 -6.4395 20 1 6.4954 -3.1570 -6.3015 21 6 5.4647 -5.0323 -6.4473 22 7 6.5326 -5.7477 -6.7174 23 14 3.8427 -5.8800 -6.0734 24 1 3.1514 -6.2094 -7.3458 25 1 4.1007 -7.1289 -5.3124 26 1 2.9863 -4.9755 -5.2647 27 6 2.8185 -0.3735 -3.7449 28 6 2.4085 -0.7099 -2.3025 29 1 -1.0500 0.0002 0.0001 30 1 3.0098 -0.9443 0.4034 31 1 3.0090 0.8228 0.6168 32 1 4.7972 -1.1123 -1.2443 33 1 5.0903 0.5616 -0.7132 34 1 6.1339 0.0188 -2.9499 35 1 4.9669 1.3655 -3.0215 36 1 2.3625 -0.4189 -5.9477 37 1 0.5430 -1.3790 -8.0669 38 1 0.2642 -3.1199 -9.7569 39 1 1.9671 -4.8706 -10.0386 40 1 3.9752 -4.8962 -8.6269 41 1 6.4789 -6.7162 -6.7232 42 1 2.4880 0.6341 -3.9973 43 1 2.3701 -1.0916 -4.4315 44 1 2.6513 -1.7501 -2.0855 45 1 1.3360 -0.5543 -2.1849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733161720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:57 Heat of formation + Delta-G solvation = 118.691378 kcal Electronic energy + Delta-G solvation = -29307.259744 eV Core-core repulsion = 25485.950295 eV Total energy + Delta-G solvation = -3821.309449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.92729 -39.57888 -37.86055 -36.10545 -35.04696 -33.67248 -32.79733 -31.53236 -30.97018 -29.25169 -29.02813 -27.89953 -25.10885 -25.01252 -23.71617 -22.89789 -21.28129 -20.83186 -19.86775 -18.95851 -18.33775 -17.97119 -16.54271 -16.12586 -15.72363 -15.43389 -15.33777 -15.22651 -15.01320 -14.78967 -14.46592 -14.04758 -13.85756 -13.48098 -13.31910 -13.18175 -13.00650 -12.90952 -12.39134 -12.31194 -12.25761 -11.97732 -11.46227 -11.36009 -11.22874 -11.12574 -11.00593 -10.95776 -10.61611 -10.47961 -10.37947 -10.22382 -9.91569 -9.43676 -9.24524 -8.70248 -8.67396 -8.25488 -7.37358 -6.95884 -6.89884 -4.50179 1.60296 2.46498 2.48332 2.63759 2.81398 3.01863 3.08685 3.16523 3.19117 3.81199 3.89033 4.01124 4.14235 4.31069 4.57486 4.76373 4.83275 4.97397 5.04172 5.13247 5.24667 5.29967 5.41483 5.46864 5.55380 5.60470 5.70781 5.72076 5.77648 5.83971 5.90596 5.92130 6.06768 6.09859 6.22008 6.39874 6.55437 6.66565 6.70391 6.79002 6.81820 6.87221 7.19700 7.24734 7.33092 7.39398 7.58339 7.60193 7.78646 7.91917 8.24598 8.68427 8.79437 9.05553 10.14753 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.004098 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.839996 B = 6831.247350 C = 7626.088273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C 0.161 3.839 4 N -0.534 5.534 5 C 0.042 3.958 6 C 0.123 3.877 7 N -0.614 5.614 8 C 0.592 3.408 9 O -0.526 6.526 10 C -0.013 4.013 11 C -0.210 4.210 12 C -0.117 4.117 13 C -0.084 4.084 14 C -0.154 4.154 15 C -0.138 4.138 16 C -0.093 4.093 17 C 0.049 3.951 18 N -0.247 5.247 19 C -0.340 4.340 20 H 0.133 0.867 21 C 0.083 3.917 22 N -0.819 5.819 23 Si 0.866 3.134 24 H -0.246 1.246 25 H -0.280 1.280 26 H -0.256 1.256 27 C 0.098 3.902 28 C 0.037 3.963 29 H 0.218 0.782 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.286 0.714 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.040 0.960 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.640 8.797 8.911 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.183 4.183 3 C 0.034 3.966 4 N -0.259 5.259 5 C -0.087 4.087 6 C 0.000 4.000 7 N -0.350 5.350 8 C 0.382 3.618 9 O -0.402 6.402 10 C -0.130 4.130 11 C -0.236 4.236 12 C -0.122 4.122 13 C -0.103 4.103 14 C -0.173 4.173 15 C -0.159 4.159 16 C -0.113 4.113 17 C -0.064 4.064 18 N 0.091 4.909 19 C -0.468 4.468 20 H 0.150 0.850 21 C -0.132 4.132 22 N -0.447 5.447 23 Si 0.690 3.310 24 H -0.170 1.170 25 H -0.206 1.206 26 H -0.180 1.180 27 C -0.025 4.025 28 C -0.092 4.092 29 H 0.235 0.765 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.157 0.843 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.136 0.864 44 H 0.059 0.941 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.519 8.760 8.821 15.658 hybrid contribution -0.670 -1.420 0.586 1.676 sum -10.189 7.340 9.408 15.690 Atomic orbital electron populations 1.24924 0.95909 1.01166 0.99488 1.22799 0.94234 1.00361 1.00880 1.19101 0.84833 1.01551 0.91077 1.62141 1.04252 1.54545 1.04962 1.22532 0.87373 1.00469 0.98311 1.21571 0.96744 0.95930 0.85747 1.47735 1.06850 1.50054 1.30344 1.17212 0.86642 0.77384 0.80538 1.90782 1.14608 1.58938 1.75894 1.19726 0.96569 0.97729 0.98949 1.20612 0.96259 1.03572 1.03176 1.17944 0.96336 0.97587 1.00339 1.20122 0.96098 0.98454 0.95584 1.20352 0.99604 0.96876 1.00505 1.20554 0.94768 0.99922 1.00627 1.20209 0.98349 0.97474 0.95247 1.18410 0.92695 0.99726 0.95533 1.40208 1.13912 1.17734 1.19031 1.19665 0.86363 0.88796 1.51974 0.84989 1.25506 0.98368 0.96187 0.93110 1.69728 1.30151 1.07905 1.36952 0.86991 0.83147 0.79831 0.81069 1.17043 1.20603 1.18007 1.22542 0.80340 1.03420 0.96240 1.22721 0.99089 0.94671 0.92692 0.76514 0.92447 0.88294 0.93852 0.89373 0.88416 0.90938 0.84272 0.87233 0.87353 0.87033 0.86493 0.90320 0.90859 0.86422 0.94128 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.81 19.00 29.55 0.56 -1.25 16 2 C -0.18 -1.91 11.50 -37.13 -0.43 -2.34 16 3 C 0.16 1.56 5.77 -6.61 -0.04 1.52 16 4 N -0.53 -6.11 4.76 -237.53 -1.13 -7.25 16 5 C 0.04 0.47 5.58 -3.70 -0.02 0.45 16 6 C 0.12 1.68 6.61 -3.61 -0.02 1.66 16 7 N -0.61 -10.28 3.00 -173.65 -0.52 -10.81 16 8 C 0.59 12.85 7.49 -12.76 -0.10 12.76 16 9 O -0.53 -13.16 14.85 5.21 0.08 -13.09 16 10 C -0.01 -0.29 6.30 -82.25 -0.52 -0.81 16 11 C -0.21 -4.17 8.39 -39.02 -0.33 -4.50 16 12 C -0.12 -2.49 6.16 -106.89 -0.66 -3.14 16 13 C -0.08 -1.51 10.06 -39.52 -0.40 -1.91 16 14 C -0.15 -2.67 9.97 -39.95 -0.40 -3.07 16 15 C -0.14 -2.63 10.02 -39.50 -0.40 -3.02 16 16 C -0.09 -2.10 6.94 -39.41 -0.27 -2.37 16 17 C 0.05 1.18 5.22 -83.83 -0.44 0.75 16 18 N -0.25 -6.36 2.38 -56.08 -0.13 -6.49 16 19 C -0.34 -9.53 9.39 -15.00 -0.14 -9.67 16 20 H 0.13 4.07 7.13 -52.49 -0.37 3.70 16 21 C 0.08 2.22 4.82 -17.47 -0.08 2.14 16 22 N -0.82 -22.44 13.95 55.50 0.77 -21.67 16 23 Si 0.87 20.67 24.60 -169.99 -4.18 16.49 16 24 H -0.25 -5.55 5.80 56.52 0.33 -5.22 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.10 1.37 5.14 -3.37 -0.02 1.36 16 28 C 0.04 0.47 5.27 -3.46 -0.02 0.45 16 29 H 0.22 1.26 7.80 -54.09 -0.42 0.84 16 30 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 34 H 0.10 1.46 7.04 -51.93 -0.37 1.10 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.14 2.24 6.07 -52.49 -0.32 1.93 16 37 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 38 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.12 2.72 6.08 -52.49 -0.32 2.40 16 41 H 0.29 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 43 H 0.12 1.81 4.38 -51.93 -0.23 1.59 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 1.06 6.29 -51.93 -0.33 0.73 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -31.67 361.36 -9.17 -40.84 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.78 Total: 7.51 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -3.71 Total: -10.99 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -1.01 Total: -46.21 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.18 Total: 16.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.67 -9.17 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733161720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.528 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds