Wall clock time and date at job start Tue Mar 31 2020 19:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46904 * 109.47224 * 96.89236 * 3 2 1 5 5 C 1.46894 * 111.00078 * 189.99653 * 4 3 2 6 6 C 1.53242 * 109.34045 * 187.24940 * 5 4 3 7 7 N 1.47072 * 108.52238 * 306.17331 * 6 5 4 8 8 C 1.34779 * 120.88455 * 231.18531 * 7 6 5 9 9 O 1.21672 * 119.99609 * 8.20488 * 8 7 6 10 10 C 1.46885 * 120.00459 * 188.20698 * 8 7 6 11 11 C 1.36125 * 125.43623 * 25.99118 * 10 8 7 12 12 C 1.41699 * 107.75088 * 179.97438 * 11 10 8 13 13 C 1.40018 * 133.35688 * 179.97438 * 12 11 10 14 14 C 1.36573 * 119.83270 * 180.02562 * 13 12 11 15 15 C 1.38857 * 120.60377 * 0.02798 * 14 13 12 16 16 C 1.37847 * 120.62876 * 359.97438 * 15 14 13 17 17 C 1.39084 * 119.81360 * 359.73303 * 16 15 14 18 18 N 1.37840 * 133.15691 * 179.59221 * 17 16 15 19 19 C 1.36891 * 125.62091 * 0.74542 * 18 17 16 20 20 H 1.08001 * 119.99849 * 136.46079 * 19 18 17 21 21 C 1.39017 * 120.00057 * 316.46441 * 19 18 17 22 22 N 1.31348 * 119.99947 * 158.14701 * 21 19 18 23 23 Si 1.86799 * 120.00025 * 338.14388 * 21 19 18 24 24 H 1.48502 * 109.47216 * 95.99451 * 23 21 19 25 25 H 1.48499 * 109.47158 * 216.00276 * 23 21 19 26 26 H 1.48508 * 109.46773 * 336.00043 * 23 21 19 27 27 C 1.47084 * 118.23921 * 51.45215 * 7 6 5 28 28 C 1.46904 * 110.99751 * 314.29624 * 4 3 2 29 29 H 4.40887 * 5.52070 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.47674 * 336.88818 * 3 2 1 31 31 H 1.09004 * 109.47099 * 216.88492 * 3 2 1 32 32 H 1.09008 * 109.49560 * 67.29350 * 5 4 3 33 33 H 1.08995 * 109.49821 * 307.21141 * 5 4 3 34 34 H 1.09002 * 109.63114 * 186.45821 * 6 5 4 35 35 H 1.09005 * 109.62632 * 65.88380 * 6 5 4 36 36 H 1.07995 * 126.12085 * 359.97438 * 11 10 8 37 37 H 1.08006 * 120.07894 * 359.97438 * 13 12 11 38 38 H 1.08004 * 119.69661 * 180.02562 * 14 13 12 39 39 H 1.07997 * 119.68525 * 180.02562 * 15 14 13 40 40 H 1.08001 * 120.09075 * 180.02562 * 16 15 14 41 41 H 0.97002 * 119.99839 * 180.02562 * 22 21 19 42 42 H 1.09001 * 109.62580 * 68.25512 * 27 7 6 43 43 H 1.09003 * 109.63139 * 188.83151 * 27 7 6 44 44 H 1.08997 * 109.49432 * 292.70939 * 28 4 3 45 45 H 1.09002 * 109.49202 * 52.78726 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 0.1671 -1.3750 5 6 4.5845 -0.0631 -1.4494 6 6 5.0838 0.2949 -2.8532 7 7 4.2845 -0.4502 -3.8375 8 6 4.8793 -1.1796 -4.8022 9 8 6.0837 -1.3506 -4.7801 10 6 4.0737 -1.7679 -5.8804 11 6 2.8790 -1.2895 -6.3240 12 6 2.4346 -2.1383 -7.3680 13 6 1.2969 -2.1435 -8.1842 14 6 1.1424 -3.1182 -9.1282 15 6 2.1041 -4.1072 -9.2871 16 6 3.2325 -4.1232 -8.4955 17 6 3.4149 -3.1374 -7.5314 18 7 4.4082 -2.8951 -6.6070 19 6 5.5415 -3.6443 -6.4395 20 1 6.4954 -3.1570 -6.3015 21 6 5.4647 -5.0323 -6.4473 22 7 6.5326 -5.7477 -6.7174 23 14 3.8427 -5.8800 -6.0734 24 1 3.1514 -6.2094 -7.3458 25 1 4.1007 -7.1289 -5.3124 26 1 2.9863 -4.9755 -5.2647 27 6 2.8185 -0.3735 -3.7449 28 6 2.4085 -0.7099 -2.3025 29 1 -1.0500 0.0002 0.0001 30 1 3.0098 -0.9443 0.4034 31 1 3.0090 0.8228 0.6168 32 1 4.7972 -1.1123 -1.2443 33 1 5.0903 0.5616 -0.7132 34 1 6.1339 0.0188 -2.9499 35 1 4.9669 1.3655 -3.0215 36 1 2.3625 -0.4189 -5.9477 37 1 0.5430 -1.3790 -8.0669 38 1 0.2642 -3.1199 -9.7569 39 1 1.9671 -4.8706 -10.0386 40 1 3.9752 -4.8962 -8.6269 41 1 6.4789 -6.7162 -6.7232 42 1 2.4880 0.6341 -3.9973 43 1 2.3701 -1.0916 -4.4315 44 1 2.6513 -1.7501 -2.0855 45 1 1.3360 -0.5543 -2.1849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733161720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:56 Heat of formation + Delta-G solvation = 97.730886 kcal Electronic energy + Delta-G solvation = -29308.168659 eV Core-core repulsion = 25485.950295 eV Total energy + Delta-G solvation = -3822.218364 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.57187 -40.91091 -39.18464 -37.67779 -36.35132 -35.45022 -33.82759 -33.09574 -32.15887 -30.85552 -30.34908 -29.16918 -26.85420 -26.22821 -24.90253 -24.26539 -22.83336 -22.20634 -21.43533 -20.46934 -19.72634 -19.01116 -17.97578 -17.67008 -17.48529 -16.77850 -16.55772 -16.40164 -16.16736 -16.01761 -15.91410 -15.51512 -15.46549 -14.99811 -14.75794 -14.52837 -14.47198 -14.29652 -14.04203 -13.73483 -13.54905 -13.26530 -13.07615 -12.86143 -12.51999 -12.43345 -12.32485 -12.29932 -12.25032 -11.92713 -11.52687 -11.39389 -11.28516 -11.10806 -10.96678 -10.38542 -9.89062 -9.39059 -9.03582 -8.88529 -8.60106 -6.54630 0.00918 0.90818 1.06217 1.11975 1.24343 1.29580 1.65440 1.79244 1.93468 1.95844 2.25266 2.61647 2.77618 2.99305 3.16092 3.45128 3.55648 3.85375 3.94263 4.04183 4.16017 4.22805 4.26056 4.30427 4.38630 4.49540 4.52056 4.56828 4.62674 4.68204 4.71479 4.76544 4.80752 4.85665 4.99641 5.01839 5.08135 5.11501 5.28020 5.36421 5.50505 5.69168 5.80033 5.82960 5.84252 5.87602 6.03959 6.09954 6.32801 6.40843 6.70262 6.79769 7.11848 7.21280 8.22426 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.004098 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.839996 B = 6831.247350 C = 7626.088273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.221 4.221 3 C 0.160 3.840 4 N -0.530 5.530 5 C 0.049 3.951 6 C 0.117 3.883 7 N -0.603 5.603 8 C 0.582 3.418 9 O -0.578 6.578 10 C -0.041 4.041 11 C -0.172 4.172 12 C -0.138 4.138 13 C -0.068 4.068 14 C -0.152 4.152 15 C -0.112 4.112 16 C -0.146 4.146 17 C 0.034 3.966 18 N -0.287 5.287 19 C -0.362 4.362 20 H 0.078 0.922 21 C 0.049 3.951 22 N -0.868 5.868 23 Si 0.924 3.076 24 H -0.224 1.224 25 H -0.272 1.272 26 H -0.275 1.275 27 C 0.095 3.905 28 C 0.044 3.956 29 H 0.246 0.754 30 H 0.056 0.944 31 H 0.120 0.880 32 H 0.023 0.977 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.184 0.816 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.292 0.708 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.016 0.984 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.250 11.005 8.949 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.221 4.221 3 C 0.035 3.965 4 N -0.255 5.255 5 C -0.079 4.079 6 C -0.005 4.005 7 N -0.337 5.337 8 C 0.372 3.628 9 O -0.458 6.458 10 C -0.156 4.156 11 C -0.198 4.198 12 C -0.143 4.143 13 C -0.086 4.086 14 C -0.171 4.171 15 C -0.132 4.132 16 C -0.166 4.166 17 C -0.078 4.078 18 N 0.049 4.951 19 C -0.489 4.489 20 H 0.095 0.905 21 C -0.160 4.160 22 N -0.499 5.499 23 Si 0.745 3.255 24 H -0.147 1.147 25 H -0.197 1.197 26 H -0.200 1.200 27 C -0.027 4.027 28 C -0.085 4.085 29 H 0.263 0.737 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.041 0.959 33 H 0.141 0.859 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.201 0.799 37 H 0.174 0.826 38 H 0.176 0.824 39 H 0.160 0.840 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.034 0.966 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.161 10.998 8.892 20.733 hybrid contribution 0.803 -1.837 0.519 2.071 sum -14.358 9.161 9.410 19.458 Atomic orbital electron populations 1.25714 0.96758 0.99769 0.97812 1.23116 0.94881 1.01739 1.02412 1.19171 0.85005 1.02411 0.89962 1.62167 1.03741 1.53629 1.05975 1.22488 0.88014 1.00006 0.97409 1.21815 0.95523 0.96774 0.86364 1.47868 1.08453 1.48325 1.29037 1.17428 0.86111 0.77789 0.81437 1.90751 1.16706 1.61113 1.77278 1.20295 0.98275 0.97002 1.00046 1.21131 0.94336 1.03402 1.00950 1.18441 0.97181 0.97191 1.01470 1.20669 0.95107 0.99141 0.93700 1.20907 1.00359 0.95345 1.00455 1.21090 0.92996 1.00266 0.98862 1.20303 1.00189 0.98346 0.97736 1.18977 0.92641 1.00812 0.95415 1.40170 1.14402 1.19157 1.21415 1.19078 0.86026 0.89422 1.54423 0.90468 1.26047 1.01136 0.96203 0.92640 1.69784 1.31988 1.08373 1.39802 0.86161 0.79582 0.78420 0.81313 1.14707 1.19728 1.19979 1.22719 0.78212 1.04628 0.97134 1.22618 1.00122 0.93597 0.92142 0.73746 0.92573 0.86190 0.95901 0.85902 0.90527 0.88353 0.79895 0.82599 0.82440 0.83956 0.88847 0.89757 0.87836 0.87671 0.96566 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 19.00 74.32 1.41 -1.34 16 2 C -0.22 -4.04 11.50 31.12 0.36 -3.68 16 3 C 0.16 2.75 5.77 84.49 0.49 3.23 16 4 N -0.53 -10.95 4.76 -905.42 -4.31 -15.27 16 5 C 0.05 1.07 5.58 86.39 0.48 1.55 16 6 C 0.12 3.18 6.61 86.35 0.57 3.76 16 7 N -0.60 -20.28 3.00 -821.52 -2.47 -22.75 16 8 C 0.58 26.72 7.49 86.51 0.65 27.37 16 9 O -0.58 -31.76 14.85 -4.26 -0.06 -31.82 16 10 C -0.04 -1.97 6.30 39.91 0.25 -1.72 16 11 C -0.17 -6.51 8.39 22.63 0.19 -6.32 16 12 C -0.14 -5.51 6.16 -21.33 -0.13 -5.64 16 13 C -0.07 -2.06 10.06 22.31 0.22 -1.84 16 14 C -0.15 -4.35 9.97 22.03 0.22 -4.13 16 15 C -0.11 -3.86 10.02 22.33 0.22 -3.63 16 16 C -0.15 -6.53 6.94 22.38 0.16 -6.37 16 17 C 0.03 1.65 5.22 39.06 0.20 1.85 16 18 N -0.29 -15.62 2.38 -331.33 -0.79 -16.41 16 19 C -0.36 -22.32 9.39 84.09 0.79 -21.54 16 20 H 0.08 5.43 7.13 -2.91 -0.02 5.41 16 21 C 0.05 2.87 4.82 84.95 0.41 3.28 16 22 N -0.87 -51.73 13.95 21.67 0.30 -51.43 16 23 Si 0.92 45.11 24.60 68.60 1.69 46.79 16 24 H -0.22 -9.97 5.80 99.48 0.58 -9.39 16 25 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 26 H -0.27 -14.02 7.11 99.48 0.71 -13.31 16 27 C 0.09 2.47 5.14 86.50 0.44 2.91 16 28 C 0.04 1.04 5.27 86.53 0.46 1.50 16 29 H 0.25 1.84 7.80 -4.42 -0.03 1.80 16 30 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16 31 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.02 0.59 8.14 -2.38 -0.02 0.58 16 33 H 0.12 1.84 8.11 -2.39 -0.02 1.82 16 34 H 0.08 2.44 7.04 -2.39 -0.02 2.42 16 35 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.18 5.12 6.07 -2.91 -0.02 5.10 16 37 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 39 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 40 H 0.09 4.54 6.08 -2.91 -0.02 4.52 16 41 H 0.29 15.71 8.31 -92.71 -0.77 14.94 16 42 H 0.10 2.14 8.11 -2.39 -0.02 2.12 16 43 H 0.11 3.01 4.38 -2.39 -0.01 3.00 16 44 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.11 2.19 6.29 -2.39 -0.02 2.17 16 Total: -1.00 -79.55 361.36 2.64 -76.91 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.88 Total: 24.72 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 7.40 Total: -10.75 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -7.27 Total: -105.85 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.06 Total: -31.82 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.69 Total: 46.79 kcal Total: -79.55 2.64 -76.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733161720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.644 kcal (2) G-P(sol) polarization free energy of solvation -79.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds