Wall clock time and date at job start Tue Mar 31 2020 19:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47490 * 2 1 4 4 N 1.46905 * 109.46906 * 119.99999 * 2 1 3 5 5 C 1.46898 * 110.99838 * 56.04619 * 4 2 1 6 6 C 1.40001 * 111.00004 * 179.97438 * 4 2 1 7 7 C 1.38841 * 120.00591 * 299.72316 * 6 4 2 8 8 C 1.38074 * 120.02755 * 179.76972 * 7 6 4 9 9 C 1.38925 * 120.03172 * 0.50538 * 8 7 6 10 10 N 1.39881 * 119.99521 * 179.76511 * 9 8 7 11 11 C 1.34774 * 119.99929 * 213.35301 * 10 9 8 12 12 O 1.21388 * 120.00382 * 5.27602 * 11 10 9 13 13 C 1.49331 * 119.99798 * 185.28042 * 11 10 9 14 14 O 1.21364 * 119.99701 * 359.97438 * 13 11 10 15 15 N 1.34774 * 119.99798 * 180.02562 * 13 11 10 16 16 C 1.46501 * 119.99748 * 179.97438 * 15 13 11 17 17 C 1.50695 * 109.47343 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99877 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00359 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99918 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99756 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46959 * 90.00023 * 21 19 17 23 23 H 1.48503 * 109.46819 * 209.99844 * 21 19 17 24 24 H 1.48492 * 109.47093 * 330.00081 * 21 19 17 25 25 C 1.38926 * 120.01109 * 359.75122 * 9 8 7 26 26 C 1.38199 * 119.97360 * 359.97438 * 25 9 8 27 27 F 1.35099 * 120.01684 * 179.97438 * 26 25 9 28 28 H 1.08994 * 109.46946 * 300.00204 * 1 2 3 29 29 H 1.08999 * 109.46606 * 59.99753 * 1 2 3 30 30 H 1.08998 * 109.47100 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47502 * 239.99907 * 2 1 3 32 32 H 1.08998 * 109.47035 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46685 * 299.99544 * 3 2 1 34 34 H 1.08994 * 109.46754 * 59.99641 * 3 2 1 35 35 H 1.09001 * 109.46901 * 183.95342 * 5 4 2 36 36 H 1.09001 * 109.47252 * 63.95478 * 5 4 2 37 37 H 1.09005 * 109.47166 * 303.95220 * 5 4 2 38 38 H 1.08005 * 119.98798 * 0.02562 * 7 6 4 39 39 H 1.08000 * 119.98581 * 180.25549 * 8 7 6 40 40 H 0.97000 * 119.99580 * 33.35675 * 10 9 8 41 41 H 0.97003 * 120.00356 * 0.02562 * 15 13 11 42 42 H 1.09007 * 109.46805 * 300.00155 * 16 15 13 43 43 H 1.08999 * 109.47520 * 59.99706 * 16 15 13 44 44 H 0.96995 * 119.99622 * 179.97438 * 20 19 17 45 45 H 1.07997 * 120.01520 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4729 -2.0535 1.2816 6 6 3.4191 -0.7117 1.2316 7 6 4.1287 -1.3277 0.2095 8 6 5.5091 -1.3428 0.2382 9 6 6.1890 -0.7508 1.2953 10 7 7.5873 -0.7708 1.3261 11 6 8.2342 -0.8483 2.5059 12 8 7.6062 -0.9971 3.5340 13 6 9.7238 -0.7509 2.5484 14 8 10.3517 -0.6025 1.5205 15 7 10.3707 -0.8289 3.7281 16 6 11.8321 -0.7339 3.7698 17 6 12.3026 -0.8501 5.1967 18 1 11.5849 -0.9819 5.9929 19 6 13.6494 -0.7891 5.4857 20 7 14.0599 -0.8900 6.7311 21 14 14.8909 -0.5633 4.1083 22 1 15.1261 0.8861 3.8867 23 1 16.1690 -1.2209 4.4812 24 1 14.3643 -1.1754 2.8621 25 6 5.4803 -0.1387 2.3215 26 6 4.0988 -0.1184 2.2902 27 9 3.4088 0.4761 3.2880 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.7947 -2.5187 2.2133 36 1 1.8342 -2.6417 0.4380 37 1 0.3840 -2.0099 1.2544 38 1 3.6008 -1.7917 -0.6107 39 1 6.0604 -1.8185 -0.5593 40 1 8.0913 -0.7289 0.4984 41 1 9.8689 -0.9486 4.5496 42 1 12.2655 -1.5401 3.1778 43 1 12.1456 0.2264 3.3604 44 1 15.0074 -0.8475 6.9343 45 1 6.0088 0.3219 3.1430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787596052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:59 Heat of formation + Delta-G solvation = -72.582219 kcal Electronic energy + Delta-G solvation = -28490.625098 eV Core-core repulsion = 24230.252179 eV Total energy + Delta-G solvation = -4260.372919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.87499 -41.07822 -40.01541 -38.59387 -37.40804 -35.15956 -34.28202 -32.49006 -32.39647 -30.93465 -29.64038 -28.47265 -27.45887 -25.75581 -24.61327 -23.56680 -22.41371 -21.68524 -20.46070 -20.08275 -18.99449 -18.11342 -17.19275 -17.01509 -16.57371 -16.20135 -16.09682 -15.65159 -15.49385 -15.28332 -15.09219 -15.04717 -14.41541 -14.27247 -14.12310 -13.87981 -13.40639 -13.25480 -13.14690 -12.81377 -12.64169 -12.57002 -12.48586 -12.34061 -12.28289 -12.06451 -11.84573 -11.52472 -11.44377 -11.17927 -11.09206 -10.87057 -10.51735 -10.07065 -9.60374 -9.41766 -9.07565 -8.90175 -8.89940 -8.47707 -8.37318 -6.28231 -4.32510 0.64877 0.90446 1.61716 2.38083 3.16096 3.20620 3.27839 3.31477 3.33070 3.47270 3.77431 4.13487 4.25343 4.41897 4.51084 4.53702 4.73114 4.79847 4.89272 4.89700 4.96473 5.05077 5.05765 5.23196 5.26500 5.31188 5.41388 5.48835 5.51630 5.57749 5.67024 5.78898 5.82495 5.87819 5.96158 6.04394 6.44560 6.53578 6.55397 6.76744 6.86559 6.93678 6.98850 7.20092 7.57622 7.92398 8.29535 8.39217 8.71488 9.28758 10.83448 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.030872 B = 0.002026 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.740790 B =13813.764465 C =14191.663009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.080 3.920 3 C -0.147 4.147 4 N -0.497 5.497 5 C 0.024 3.976 6 C 0.037 3.963 7 C -0.101 4.101 8 C -0.145 4.145 9 C 0.180 3.820 10 N -0.651 5.651 11 C 0.510 3.490 12 O -0.495 6.495 13 C 0.494 3.506 14 O -0.537 6.537 15 N -0.662 5.662 16 C 0.218 3.782 17 C -0.550 4.550 18 H 0.083 0.917 19 C 0.080 3.920 20 N -0.887 5.887 21 Si 0.877 3.123 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.261 1.261 25 C -0.156 4.156 26 C 0.148 3.852 27 F -0.123 7.123 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.079 0.921 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.426 0.574 41 H 0.411 0.589 42 H 0.034 0.966 43 H 0.029 0.971 44 H 0.269 0.731 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.044 0.125 -16.876 31.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 C -0.205 4.205 4 N -0.219 5.219 5 C -0.122 4.122 6 C -0.059 4.059 7 C -0.121 4.121 8 C -0.166 4.166 9 C 0.085 3.915 10 N -0.298 5.298 11 C 0.292 3.708 12 O -0.367 6.367 13 C 0.273 3.727 14 O -0.416 6.416 15 N -0.311 5.311 16 C 0.096 3.904 17 C -0.588 4.588 18 H 0.101 0.899 19 C -0.125 4.125 20 N -0.524 5.524 21 Si 0.703 3.297 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.185 1.185 25 C -0.178 4.178 26 C 0.127 3.873 27 F -0.101 7.101 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.097 0.903 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.265 0.735 41 H 0.247 0.753 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.079 0.921 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -25.976 0.419 -16.213 30.624 hybrid contribution 0.974 -0.319 -1.063 1.477 sum -25.002 0.100 -17.276 30.390 Atomic orbital electron populations 1.21936 0.93883 1.02166 1.02595 1.21733 0.95712 0.95301 0.89884 1.21849 1.01367 0.94899 1.02338 1.59667 1.03866 1.18057 1.40318 1.22528 1.00794 0.87383 1.01515 1.18658 0.89583 1.02360 0.95274 1.21207 0.93732 0.98808 0.98382 1.20824 0.94097 1.01917 0.99734 1.17427 0.82493 0.96114 0.95491 1.43266 1.04369 1.71566 1.10638 1.20837 0.89896 0.76565 0.83476 1.90792 1.68520 1.44537 1.32866 1.19644 0.86790 0.80639 0.85651 1.90735 1.67782 1.50009 1.33078 1.46138 1.10367 1.66853 1.07773 1.19737 0.74164 0.97387 0.99086 1.21041 0.93877 1.53173 0.90660 0.89873 1.24786 0.98126 0.93821 0.95751 1.69874 1.16039 1.48509 1.17937 0.86819 0.80966 0.79188 0.82714 1.19722 1.20738 1.18513 1.21098 0.92172 1.02773 1.01734 1.17229 0.88487 0.95600 0.85992 1.91517 1.79311 1.80882 1.58423 0.91482 0.91927 0.92315 0.93704 0.92554 0.91988 0.91600 0.91009 0.95048 0.90289 0.84983 0.84672 0.73523 0.75303 0.94833 0.95268 0.92083 0.83018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.84 37.16 0.33 -0.51 16 2 C 0.08 0.58 2.46 -67.71 -0.17 0.41 16 3 C -0.15 -1.11 9.07 37.16 0.34 -0.78 16 4 N -0.50 -4.44 4.45 -171.21 -0.76 -5.21 16 5 C 0.02 0.18 9.01 60.06 0.54 0.72 16 6 C 0.04 0.37 3.33 -83.59 -0.28 0.09 16 7 C -0.10 -0.84 8.56 -39.42 -0.34 -1.18 16 8 C -0.14 -1.28 9.96 -39.39 -0.39 -1.67 16 9 C 0.18 2.05 6.28 -83.67 -0.53 1.53 16 10 N -0.65 -7.89 5.33 -10.26 -0.05 -7.95 16 11 C 0.51 7.88 7.62 -11.64 -0.09 7.79 16 12 O -0.49 -8.48 14.16 5.46 0.08 -8.40 16 13 C 0.49 9.00 7.88 -11.64 -0.09 8.91 16 14 O -0.54 -10.61 16.48 5.48 0.09 -10.52 16 15 N -0.66 -13.33 5.54 -61.95 -0.34 -13.67 16 16 C 0.22 5.11 4.50 -5.20 -0.02 5.09 16 17 C -0.55 -14.76 9.83 -34.44 -0.34 -15.10 16 18 H 0.08 2.36 7.84 -52.48 -0.41 1.95 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 21 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 25 C -0.16 -2.00 8.62 -39.34 -0.34 -2.34 16 26 C 0.15 1.81 7.31 -39.28 -0.29 1.52 16 27 F -0.12 -1.66 17.07 2.25 0.04 -1.63 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.29 6.26 -51.93 -0.33 -0.04 16 31 H 0.05 0.30 7.14 -51.93 -0.37 -0.07 16 32 H 0.06 0.49 7.22 -51.93 -0.37 0.11 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.03 0.20 7.32 -51.93 -0.38 -0.18 16 37 H 0.08 0.46 6.01 -51.93 -0.31 0.15 16 38 H 0.13 0.83 7.01 -52.48 -0.37 0.46 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.43 4.34 8.30 -40.82 -0.34 4.00 16 41 H 0.41 7.90 7.79 -40.82 -0.32 7.58 16 42 H 0.03 0.81 7.20 -51.93 -0.37 0.44 16 43 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.15 2.16 6.41 -52.49 -0.34 1.82 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -30.92 377.10 -6.93 -37.85 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.01 Total: 6.46 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -1.76 Total: 6.58 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -0.39 Total: -51.95 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.17 Total: -18.93 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.92 -6.93 -37.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787596052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.734 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds