Wall clock time and date at job start Tue Mar 31 2020 19:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47490 * 2 1 4 4 N 1.46905 * 109.46906 * 119.99999 * 2 1 3 5 5 C 1.46898 * 110.99838 * 56.04619 * 4 2 1 6 6 C 1.40001 * 111.00004 * 179.97438 * 4 2 1 7 7 C 1.38841 * 120.00591 * 299.72316 * 6 4 2 8 8 C 1.38074 * 120.02755 * 179.76972 * 7 6 4 9 9 C 1.38925 * 120.03172 * 0.50538 * 8 7 6 10 10 N 1.39881 * 119.99521 * 179.76511 * 9 8 7 11 11 C 1.34774 * 119.99929 * 213.35301 * 10 9 8 12 12 O 1.21388 * 120.00382 * 5.27602 * 11 10 9 13 13 C 1.49331 * 119.99798 * 185.28042 * 11 10 9 14 14 O 1.21364 * 119.99701 * 359.97438 * 13 11 10 15 15 N 1.34774 * 119.99798 * 180.02562 * 13 11 10 16 16 C 1.46501 * 119.99748 * 179.97438 * 15 13 11 17 17 C 1.50695 * 109.47343 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99877 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00359 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99918 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99756 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46959 * 90.00023 * 21 19 17 23 23 H 1.48503 * 109.46819 * 209.99844 * 21 19 17 24 24 H 1.48492 * 109.47093 * 330.00081 * 21 19 17 25 25 C 1.38926 * 120.01109 * 359.75122 * 9 8 7 26 26 C 1.38199 * 119.97360 * 359.97438 * 25 9 8 27 27 F 1.35099 * 120.01684 * 179.97438 * 26 25 9 28 28 H 1.08994 * 109.46946 * 300.00204 * 1 2 3 29 29 H 1.08999 * 109.46606 * 59.99753 * 1 2 3 30 30 H 1.08998 * 109.47100 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47502 * 239.99907 * 2 1 3 32 32 H 1.08998 * 109.47035 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46685 * 299.99544 * 3 2 1 34 34 H 1.08994 * 109.46754 * 59.99641 * 3 2 1 35 35 H 1.09001 * 109.46901 * 183.95342 * 5 4 2 36 36 H 1.09001 * 109.47252 * 63.95478 * 5 4 2 37 37 H 1.09005 * 109.47166 * 303.95220 * 5 4 2 38 38 H 1.08005 * 119.98798 * 0.02562 * 7 6 4 39 39 H 1.08000 * 119.98581 * 180.25549 * 8 7 6 40 40 H 0.97000 * 119.99580 * 33.35675 * 10 9 8 41 41 H 0.97003 * 120.00356 * 0.02562 * 15 13 11 42 42 H 1.09007 * 109.46805 * 300.00155 * 16 15 13 43 43 H 1.08999 * 109.47520 * 59.99706 * 16 15 13 44 44 H 0.96995 * 119.99622 * 179.97438 * 20 19 17 45 45 H 1.07997 * 120.01520 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4729 -2.0535 1.2816 6 6 3.4191 -0.7117 1.2316 7 6 4.1287 -1.3277 0.2095 8 6 5.5091 -1.3428 0.2382 9 6 6.1890 -0.7508 1.2953 10 7 7.5873 -0.7708 1.3261 11 6 8.2342 -0.8483 2.5059 12 8 7.6062 -0.9971 3.5340 13 6 9.7238 -0.7509 2.5484 14 8 10.3517 -0.6025 1.5205 15 7 10.3707 -0.8289 3.7281 16 6 11.8321 -0.7339 3.7698 17 6 12.3026 -0.8501 5.1967 18 1 11.5849 -0.9819 5.9929 19 6 13.6494 -0.7891 5.4857 20 7 14.0599 -0.8900 6.7311 21 14 14.8909 -0.5633 4.1083 22 1 15.1261 0.8861 3.8867 23 1 16.1690 -1.2209 4.4812 24 1 14.3643 -1.1754 2.8621 25 6 5.4803 -0.1387 2.3215 26 6 4.0988 -0.1184 2.2902 27 9 3.4088 0.4761 3.2880 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.7947 -2.5187 2.2133 36 1 1.8342 -2.6417 0.4380 37 1 0.3840 -2.0099 1.2544 38 1 3.6008 -1.7917 -0.6107 39 1 6.0604 -1.8185 -0.5593 40 1 8.0913 -0.7289 0.4984 41 1 9.8689 -0.9486 4.5496 42 1 12.2655 -1.5401 3.1778 43 1 12.1456 0.2264 3.3604 44 1 15.0074 -0.8475 6.9343 45 1 6.0088 0.3219 3.1430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787596052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:58 Heat of formation + Delta-G solvation = -94.761768 kcal Electronic energy + Delta-G solvation = -28491.586875 eV Core-core repulsion = 24230.252179 eV Total energy + Delta-G solvation = -4261.334696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.84339 -42.22745 -40.94043 -39.87081 -38.36249 -36.59521 -35.58735 -34.43533 -33.08288 -31.75279 -30.58761 -30.13741 -28.16637 -26.62561 -25.72970 -24.53344 -23.70259 -22.89983 -21.67364 -20.93586 -20.33190 -19.20254 -18.67732 -17.97038 -17.75720 -17.42366 -17.04223 -16.88999 -16.70299 -16.59306 -16.11921 -15.87695 -15.66359 -15.57797 -15.14326 -14.98747 -14.68612 -14.45046 -14.13349 -13.95922 -13.85504 -13.60581 -13.30247 -13.17577 -13.14044 -13.02671 -12.82476 -12.70354 -12.61277 -12.41047 -12.04776 -11.92105 -11.75871 -11.70993 -11.43984 -10.94004 -10.82816 -10.20959 -9.95111 -9.50230 -9.25472 -8.40349 -6.50253 -0.30442 0.08515 0.39128 1.14459 1.36558 1.38287 1.49668 1.96940 2.28361 2.45113 2.52096 2.69562 2.94530 3.21078 3.37517 3.69118 3.93366 3.97665 4.02488 4.11783 4.26320 4.36864 4.42691 4.56883 4.63513 4.63816 4.79535 4.85759 4.89163 4.91409 4.94646 4.95894 4.98962 5.07900 5.09398 5.13224 5.13654 5.22483 5.30489 5.40733 5.59031 5.77152 6.00004 6.03051 6.28234 6.39819 6.50542 6.63251 6.85166 7.16118 8.74600 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.030872 B = 0.002026 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.740790 B =13813.764465 C =14191.663009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.079 3.921 3 C -0.146 4.146 4 N -0.517 5.517 5 C 0.024 3.976 6 C 0.048 3.952 7 C -0.093 4.093 8 C -0.123 4.123 9 C 0.159 3.841 10 N -0.630 5.630 11 C 0.518 3.482 12 O -0.516 6.516 13 C 0.501 3.499 14 O -0.548 6.548 15 N -0.672 5.672 16 C 0.229 3.771 17 C -0.557 4.557 18 H 0.053 0.947 19 C 0.024 3.976 20 N -0.932 5.932 21 Si 0.944 3.056 22 H -0.263 1.263 23 H -0.275 1.275 24 H -0.250 1.250 25 C -0.170 4.170 26 C 0.120 3.880 27 F -0.140 7.140 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.166 0.834 39 H 0.169 0.831 40 H 0.437 0.563 41 H 0.413 0.587 42 H 0.033 0.967 43 H 0.030 0.970 44 H 0.273 0.727 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.254 -0.671 -20.718 34.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 C -0.203 4.203 4 N -0.240 5.240 5 C -0.122 4.122 6 C -0.047 4.047 7 C -0.113 4.113 8 C -0.143 4.143 9 C 0.065 3.935 10 N -0.278 5.278 11 C 0.300 3.700 12 O -0.391 6.391 13 C 0.280 3.720 14 O -0.427 6.427 15 N -0.321 5.321 16 C 0.106 3.894 17 C -0.594 4.594 18 H 0.071 0.929 19 C -0.176 4.176 20 N -0.570 5.570 21 Si 0.767 3.233 22 H -0.188 1.188 23 H -0.200 1.200 24 H -0.173 1.173 25 C -0.191 4.191 26 C 0.100 3.900 27 F -0.118 7.118 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.183 0.817 39 H 0.187 0.813 40 H 0.278 0.722 41 H 0.250 0.750 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -27.234 -0.375 -20.102 33.851 hybrid contribution 1.172 -0.063 0.120 1.180 sum -26.062 -0.438 -19.982 32.844 Atomic orbital electron populations 1.21916 0.92703 1.02895 1.02682 1.21828 0.96634 0.94625 0.89576 1.21850 1.00430 0.95659 1.02403 1.59653 1.03207 1.19326 1.41765 1.22573 1.01671 0.86493 1.01498 1.18810 0.90468 1.00906 0.94526 1.21548 0.93573 0.97781 0.98404 1.21161 0.94370 0.99850 0.98937 1.17549 0.81737 0.97720 0.96461 1.43039 1.04882 1.70119 1.09789 1.20184 0.88356 0.77115 0.84316 1.90804 1.68345 1.46080 1.33855 1.19980 0.88072 0.79299 0.84605 1.90719 1.68584 1.50150 1.33265 1.45981 1.09265 1.68052 1.08838 1.19396 0.76153 0.97199 0.96623 1.21258 0.93705 1.52664 0.91807 0.92896 1.25699 1.00306 0.93414 0.98224 1.70001 1.16789 1.49976 1.20227 0.85758 0.78277 0.79603 0.79679 1.18773 1.20049 1.17322 1.20989 0.92634 1.03709 1.01814 1.17482 0.88474 0.97214 0.86871 1.91465 1.79560 1.81460 1.59347 0.92747 0.90518 0.91252 0.92118 0.93910 0.90215 0.93272 0.92378 0.93385 0.88880 0.81690 0.81335 0.72194 0.75044 0.94958 0.95194 0.91742 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.84 71.98 0.64 -0.63 16 2 C 0.08 0.93 2.46 44.92 0.11 1.04 16 3 C -0.15 -2.01 9.07 71.98 0.65 -1.35 16 4 N -0.52 -8.33 4.45 -695.57 -3.10 -11.42 16 5 C 0.02 0.28 9.01 127.69 1.15 1.43 16 6 C 0.05 0.90 3.33 38.19 0.13 1.03 16 7 C -0.09 -1.22 8.56 22.38 0.19 -1.03 16 8 C -0.12 -1.74 9.96 22.40 0.22 -1.51 16 9 C 0.16 3.42 6.28 38.19 0.24 3.66 16 10 N -0.63 -14.39 5.33 -304.73 -1.62 -16.02 16 11 C 0.52 15.89 7.62 87.23 0.66 16.55 16 12 O -0.52 -18.09 14.16 -3.37 -0.05 -18.14 16 13 C 0.50 18.01 7.88 87.23 0.69 18.70 16 14 O -0.55 -20.93 16.48 -3.29 -0.05 -20.98 16 15 N -0.67 -27.32 5.54 -468.26 -2.59 -29.91 16 16 C 0.23 10.73 4.50 85.63 0.38 11.11 16 17 C -0.56 -30.57 9.83 25.60 0.25 -30.32 16 18 H 0.05 3.14 7.84 -2.91 -0.02 3.12 16 19 C 0.02 1.34 5.47 84.65 0.46 1.80 16 20 N -0.93 -55.55 13.96 21.45 0.30 -55.25 16 21 Si 0.94 42.20 27.47 68.60 1.88 44.08 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 25 C -0.17 -4.43 8.62 22.43 0.19 -4.24 16 26 C 0.12 2.98 7.31 22.47 0.16 3.15 16 27 F -0.14 -4.00 17.07 44.97 0.77 -3.24 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.46 6.26 -2.39 -0.01 0.45 16 31 H 0.06 0.54 7.14 -2.39 -0.02 0.53 16 32 H 0.04 0.69 7.22 -2.39 -0.02 0.68 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.42 7.32 -2.39 -0.02 0.40 16 37 H 0.09 0.84 6.01 -2.38 -0.01 0.83 16 38 H 0.17 1.16 7.01 -2.91 -0.02 1.14 16 39 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.44 7.90 8.30 -92.71 -0.77 7.13 16 41 H 0.41 16.43 7.79 -92.71 -0.72 15.71 16 42 H 0.03 1.53 7.20 -2.38 -0.02 1.52 16 43 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 44 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 45 H 0.13 3.90 6.41 -2.91 -0.02 3.88 16 Total: -1.00 -68.62 377.10 1.18 -67.44 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -0.50 Total: 24.04 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 6.14 Total: 19.39 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -7.02 Total: -112.60 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.10 Total: -39.12 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.77 Total: -3.24 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.88 Total: 44.08 kcal Total: -68.62 1.18 -67.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787596052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.320 kcal (2) G-P(sol) polarization free energy of solvation -68.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds