Wall clock time and date at job start Tue Mar 31 2020 19:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47097 * 59.21914 * 3 2 1 5 5 C 1.34950 * 126.03534 * 124.99780 * 4 3 2 6 6 C 1.35319 * 107.74748 * 179.97438 * 5 4 3 7 7 C 1.50693 * 126.04309 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47348 * 270.00537 * 7 6 5 9 9 C 1.34781 * 120.00033 * 179.97438 * 8 7 6 10 10 O 1.21287 * 120.00124 * 359.97438 * 9 8 7 11 11 C 1.50694 * 120.00288 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.47594 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46891 * 54.99803 * 12 11 9 14 14 C 1.50703 * 109.47132 * 295.00467 * 12 11 9 15 15 H 1.08002 * 119.99491 * 325.84162 * 14 12 11 16 16 C 1.37873 * 120.00001 * 145.84684 * 14 12 11 17 17 N 1.31513 * 119.99954 * 6.11522 * 16 14 12 18 18 Si 1.86801 * 119.99877 * 186.11926 * 16 14 12 19 19 H 1.48490 * 109.47337 * 59.99642 * 18 16 14 20 20 H 1.48495 * 109.47051 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46835 * 299.99574 * 18 16 14 22 22 C 1.50699 * 109.47357 * 175.00242 * 12 11 9 23 23 C 1.38235 * 120.00081 * 63.46321 * 22 12 11 24 24 C 1.38231 * 119.99745 * 179.80917 * 23 22 12 25 25 C 1.38232 * 120.00272 * 0.40479 * 24 23 22 26 26 C 1.38236 * 119.99977 * 359.84827 * 25 24 23 27 27 C 1.38235 * 119.99977 * 359.96236 * 26 25 24 28 28 C 1.39870 * 107.91797 * 0.02562 * 6 5 4 29 29 N 1.30844 * 108.20610 * 359.97438 * 28 6 5 30 30 H 4.40634 * 5.51336 * 180.02562 * 4 1 2 31 31 H 1.09008 * 109.47270 * 299.22269 * 3 2 1 32 32 H 1.08993 * 109.47398 * 179.22387 * 3 2 1 33 33 H 1.07995 * 126.12882 * 0.03809 * 5 4 3 34 34 H 1.09007 * 109.46914 * 30.00611 * 7 6 5 35 35 H 1.09000 * 109.47275 * 150.00035 * 7 6 5 36 36 H 0.97001 * 120.00379 * 0.02562 * 8 7 6 37 37 H 1.08999 * 109.47421 * 300.00222 * 11 9 8 38 38 H 1.09005 * 109.47116 * 60.00210 * 11 9 8 39 39 H 0.97008 * 120.00046 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.00058 * 359.97438 * 23 22 12 41 41 H 1.08004 * 119.99692 * 180.23243 * 24 23 22 42 42 H 1.08004 * 120.00279 * 179.83970 * 25 24 23 43 43 H 1.07999 * 120.00144 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.00116 * 179.97438 * 27 26 25 45 45 H 1.08005 * 125.89754 * 179.73915 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.7060 -1.1866 5 6 3.9892 -0.2138 -2.1079 6 6 4.1887 -1.1743 -3.0401 7 6 5.0725 -1.0604 -4.2554 8 7 4.2923 -0.5365 -5.3792 9 6 4.8794 -0.3491 -6.5778 10 8 6.0538 -0.6138 -6.7259 11 6 4.0769 0.1893 -7.7341 12 6 4.9745 0.3062 -8.9675 13 1 5.4381 -0.6588 -9.1723 14 6 6.0464 1.3345 -8.7131 15 1 5.8299 2.2015 -8.1066 16 6 7.3034 1.1684 -9.2547 17 7 7.5342 0.1789 -10.0897 18 14 8.6787 2.3488 -8.8023 19 1 8.9104 2.3004 -7.3363 20 1 9.9221 1.9557 -9.5126 21 1 8.2971 3.7284 -9.1979 22 6 4.1459 0.7273 -10.1538 23 6 3.5166 1.9581 -10.1554 24 6 2.7598 2.3459 -11.2452 25 6 2.6254 1.4995 -12.3298 26 6 3.2504 0.2665 -12.3260 27 6 4.0104 -0.1197 -11.2378 28 6 3.4297 -2.2914 -2.6763 29 7 2.7976 -2.0119 -1.5653 30 1 -1.0498 0.0001 -0.0002 31 1 3.0096 -0.5009 0.8969 32 1 3.0089 1.0283 -0.0139 33 1 4.4348 0.7698 -2.1018 34 1 5.8999 -0.3841 -4.0408 35 1 5.4648 -2.0443 -4.5127 36 1 3.3534 -0.3237 -5.2605 37 1 3.2500 -0.4875 -7.9489 38 1 3.6838 1.1730 -7.4768 39 1 8.4187 0.0619 -10.4704 40 1 3.6185 2.6178 -9.3064 41 1 2.2712 3.3091 -11.2481 42 1 2.0320 1.8015 -13.1802 43 1 3.1451 -0.3949 -13.1732 44 1 4.4984 -1.0832 -11.2346 45 1 3.3721 -3.2224 -3.2206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834614564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:46 Heat of formation + Delta-G solvation = 123.790393 kcal Electronic energy + Delta-G solvation = -27197.167682 eV Core-core repulsion = 23376.079344 eV Total energy + Delta-G solvation = -3821.088339 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45629 -38.92768 -38.09216 -35.46767 -34.35111 -33.70547 -32.07493 -31.44045 -30.63522 -29.96416 -28.84790 -27.76989 -25.83824 -24.54555 -22.59358 -21.62100 -21.57481 -20.56968 -20.06320 -19.17559 -18.69019 -17.25855 -16.51018 -16.18756 -15.84535 -15.65524 -15.21115 -14.88799 -14.55330 -14.41893 -14.14788 -13.99714 -13.81146 -13.54038 -13.28295 -12.95611 -12.66848 -12.51365 -12.25421 -12.19052 -11.86788 -11.58152 -11.48858 -11.11141 -10.87167 -10.80412 -10.67079 -10.59539 -10.54930 -10.21648 -10.00720 -9.69567 -9.40150 -9.09925 -8.96106 -8.53903 -8.42200 -8.24867 -8.00202 -7.55586 -5.88094 -3.87322 1.56548 1.78656 2.33159 2.33201 2.38960 2.53918 2.83716 3.42061 3.46015 3.49703 3.66506 3.76246 4.06120 4.33248 4.56497 4.60035 4.77544 4.80015 4.86505 5.14795 5.33466 5.40943 5.46596 5.59469 5.69738 5.76496 5.77681 5.88442 6.10440 6.13577 6.17240 6.28324 6.34640 6.43562 6.45624 6.59242 6.70450 6.86780 6.96376 7.05181 7.09655 7.09847 7.35189 7.46799 7.49885 7.58533 7.90664 7.99913 8.10739 8.23922 8.44608 9.12092 9.20793 9.74282 11.22161 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011232 B = 0.002617 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.339177 B =10696.403645 C =12071.461166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.216 4.216 3 C 0.251 3.749 4 N -0.378 5.378 5 C 0.075 3.925 6 C -0.246 4.246 7 C 0.201 3.799 8 N -0.747 5.747 9 C 0.511 3.489 10 O -0.497 6.497 11 C -0.122 4.122 12 C 0.081 3.919 13 H 0.072 0.928 14 C -0.491 4.491 15 H 0.049 0.951 16 C 0.079 3.921 17 N -0.882 5.882 18 Si 0.886 3.114 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.280 1.280 22 C -0.020 4.020 23 C -0.116 4.116 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.128 4.128 27 C -0.119 4.119 28 C 0.065 3.935 29 N -0.292 5.292 30 H 0.222 0.778 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.178 0.822 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.392 0.608 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.259 0.741 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.618 -0.255 15.716 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.217 4.217 3 C 0.131 3.869 4 N -0.160 5.160 5 C -0.071 4.071 6 C -0.258 4.258 7 C 0.076 3.924 8 N -0.403 5.403 9 C 0.298 3.702 10 O -0.368 6.368 11 C -0.163 4.163 12 C 0.062 3.938 13 H 0.090 0.910 14 C -0.529 4.529 15 H 0.067 0.933 16 C -0.124 4.124 17 N -0.519 5.519 18 Si 0.714 3.286 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.206 1.206 22 C -0.021 4.021 23 C -0.134 4.134 24 C -0.150 4.150 25 C -0.175 4.175 26 C -0.146 4.146 27 C -0.137 4.137 28 C -0.122 4.122 29 N -0.112 5.112 30 H 0.239 0.761 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.195 0.805 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.224 0.776 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.132 0.868 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -12.372 -0.896 16.500 20.643 hybrid contribution 0.765 1.213 -0.386 1.485 sum -11.607 0.316 16.115 19.862 Atomic orbital electron populations 1.25027 0.95975 0.99052 0.97361 1.22761 0.94250 1.01893 1.02778 1.18370 0.84819 0.97440 0.86271 1.48535 1.35900 1.11234 1.20334 1.22487 0.94558 1.00008 0.90078 1.20225 1.09009 0.95204 1.01349 1.19289 0.91637 0.99754 0.81692 1.46348 1.13751 1.69531 1.10693 1.20884 0.88533 0.77754 0.83035 1.90761 1.15760 1.47570 1.82749 1.21788 0.98510 1.00235 0.95744 1.17825 0.90505 1.00312 0.85202 0.90996 1.20637 0.94641 1.06594 1.31016 0.93265 1.24800 0.98288 0.95011 0.94343 1.69903 1.21969 1.30548 1.29438 0.86764 0.81910 0.81125 0.78754 1.20277 1.21491 1.20616 1.20762 0.91123 0.92633 0.97582 1.20942 0.97601 0.96765 0.98068 1.20967 1.00564 0.98792 0.94713 1.20785 1.02756 0.95456 0.98465 1.20981 0.98953 0.96541 0.98160 1.21093 0.98516 1.00120 0.93967 1.23930 0.94828 0.99653 0.93801 1.77422 1.23395 0.94306 1.16111 0.76136 0.87504 0.86247 0.80508 0.91465 0.91224 0.77564 0.91764 0.90708 0.93125 0.86944 0.87738 0.87864 0.87677 0.86825 0.79788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 19.25 29.55 0.57 -0.62 16 2 C -0.22 -1.84 13.52 -37.12 -0.50 -2.35 16 3 C 0.25 1.69 6.99 -6.83 -0.05 1.64 16 4 N -0.38 -3.74 3.65 -64.24 -0.23 -3.98 16 5 C 0.07 0.72 11.36 -17.22 -0.20 0.52 16 6 C -0.25 -2.74 5.47 -105.06 -0.57 -3.32 16 7 C 0.20 2.69 6.15 -5.20 -0.03 2.66 16 8 N -0.75 -11.03 5.55 -61.47 -0.34 -11.37 16 9 C 0.51 10.08 7.58 -10.99 -0.08 10.00 16 10 O -0.50 -12.32 14.98 5.55 0.08 -12.24 16 11 C -0.12 -2.36 4.95 -27.89 -0.14 -2.50 16 12 C 0.08 1.93 1.67 -92.92 -0.16 1.77 16 13 H 0.07 1.98 6.98 -51.93 -0.36 1.62 16 14 C -0.49 -13.21 6.37 -34.44 -0.22 -13.42 16 15 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 16 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 17 N -0.88 -26.03 12.87 55.43 0.71 -25.31 16 18 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 23 C -0.12 -2.35 8.86 -39.59 -0.35 -2.71 16 24 C -0.13 -2.40 10.05 -39.59 -0.40 -2.80 16 25 C -0.16 -2.76 10.05 -39.58 -0.40 -3.15 16 26 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 27 C -0.12 -2.53 9.67 -39.58 -0.38 -2.92 16 28 C 0.07 0.73 11.96 -17.36 -0.21 0.52 16 29 N -0.29 -3.56 12.39 30.63 0.38 -3.18 16 30 H 0.22 0.94 7.80 -54.10 -0.42 0.52 16 31 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.12 0.43 8.07 -51.93 -0.42 0.01 16 33 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.39 4.85 8.46 -40.82 -0.35 4.51 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.34 7.77 -51.93 -0.40 0.93 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.11 2.20 7.76 -52.49 -0.41 1.79 16 41 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 42 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.11 2.44 7.95 -52.49 -0.42 2.03 16 45 H 0.19 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 398.25 15.07 6.00 6.00 Total: -1.00 -35.52 398.25 -8.66 -44.17 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.13 Total: 6.94 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -4.11 Total: -18.28 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.52 Total: -43.84 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.52 -8.66 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834614564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.963 kcal (2) G-P(sol) polarization free energy of solvation -35.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds