Wall clock time and date at job start Tue Mar 31 2020 19:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47097 * 59.21914 * 3 2 1 5 5 C 1.34950 * 126.03534 * 124.99780 * 4 3 2 6 6 C 1.35319 * 107.74748 * 179.97438 * 5 4 3 7 7 C 1.50693 * 126.04309 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47348 * 270.00537 * 7 6 5 9 9 C 1.34781 * 120.00033 * 179.97438 * 8 7 6 10 10 O 1.21287 * 120.00124 * 359.97438 * 9 8 7 11 11 C 1.50694 * 120.00288 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.47594 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46891 * 54.99803 * 12 11 9 14 14 C 1.50703 * 109.47132 * 295.00467 * 12 11 9 15 15 H 1.08002 * 119.99491 * 325.84162 * 14 12 11 16 16 C 1.37873 * 120.00001 * 145.84684 * 14 12 11 17 17 N 1.31513 * 119.99954 * 6.11522 * 16 14 12 18 18 Si 1.86801 * 119.99877 * 186.11926 * 16 14 12 19 19 H 1.48490 * 109.47337 * 59.99642 * 18 16 14 20 20 H 1.48495 * 109.47051 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46835 * 299.99574 * 18 16 14 22 22 C 1.50699 * 109.47357 * 175.00242 * 12 11 9 23 23 C 1.38235 * 120.00081 * 63.46321 * 22 12 11 24 24 C 1.38231 * 119.99745 * 179.80917 * 23 22 12 25 25 C 1.38232 * 120.00272 * 0.40479 * 24 23 22 26 26 C 1.38236 * 119.99977 * 359.84827 * 25 24 23 27 27 C 1.38235 * 119.99977 * 359.96236 * 26 25 24 28 28 C 1.39870 * 107.91797 * 0.02562 * 6 5 4 29 29 N 1.30844 * 108.20610 * 359.97438 * 28 6 5 30 30 H 4.40634 * 5.51336 * 180.02562 * 4 1 2 31 31 H 1.09008 * 109.47270 * 299.22269 * 3 2 1 32 32 H 1.08993 * 109.47398 * 179.22387 * 3 2 1 33 33 H 1.07995 * 126.12882 * 0.03809 * 5 4 3 34 34 H 1.09007 * 109.46914 * 30.00611 * 7 6 5 35 35 H 1.09000 * 109.47275 * 150.00035 * 7 6 5 36 36 H 0.97001 * 120.00379 * 0.02562 * 8 7 6 37 37 H 1.08999 * 109.47421 * 300.00222 * 11 9 8 38 38 H 1.09005 * 109.47116 * 60.00210 * 11 9 8 39 39 H 0.97008 * 120.00046 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.00058 * 359.97438 * 23 22 12 41 41 H 1.08004 * 119.99692 * 180.23243 * 24 23 22 42 42 H 1.08004 * 120.00279 * 179.83970 * 25 24 23 43 43 H 1.07999 * 120.00144 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.00116 * 179.97438 * 27 26 25 45 45 H 1.08005 * 125.89754 * 179.73915 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.7060 -1.1866 5 6 3.9892 -0.2138 -2.1079 6 6 4.1887 -1.1743 -3.0401 7 6 5.0725 -1.0604 -4.2554 8 7 4.2923 -0.5365 -5.3792 9 6 4.8794 -0.3491 -6.5778 10 8 6.0538 -0.6138 -6.7259 11 6 4.0769 0.1893 -7.7341 12 6 4.9745 0.3062 -8.9675 13 1 5.4381 -0.6588 -9.1723 14 6 6.0464 1.3345 -8.7131 15 1 5.8299 2.2015 -8.1066 16 6 7.3034 1.1684 -9.2547 17 7 7.5342 0.1789 -10.0897 18 14 8.6787 2.3488 -8.8023 19 1 8.9104 2.3004 -7.3363 20 1 9.9221 1.9557 -9.5126 21 1 8.2971 3.7284 -9.1979 22 6 4.1459 0.7273 -10.1538 23 6 3.5166 1.9581 -10.1554 24 6 2.7598 2.3459 -11.2452 25 6 2.6254 1.4995 -12.3298 26 6 3.2504 0.2665 -12.3260 27 6 4.0104 -0.1197 -11.2378 28 6 3.4297 -2.2914 -2.6763 29 7 2.7976 -2.0119 -1.5653 30 1 -1.0498 0.0001 -0.0002 31 1 3.0096 -0.5009 0.8969 32 1 3.0089 1.0283 -0.0139 33 1 4.4348 0.7698 -2.1018 34 1 5.8999 -0.3841 -4.0408 35 1 5.4648 -2.0443 -4.5127 36 1 3.3534 -0.3237 -5.2605 37 1 3.2500 -0.4875 -7.9489 38 1 3.6838 1.1730 -7.4768 39 1 8.4187 0.0619 -10.4704 40 1 3.6185 2.6178 -9.3064 41 1 2.2712 3.3091 -11.2481 42 1 2.0320 1.8015 -13.1802 43 1 3.1451 -0.3949 -13.1732 44 1 4.4984 -1.0832 -11.2346 45 1 3.3721 -3.2224 -3.2206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834614564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:45 Heat of formation + Delta-G solvation = 102.177701 kcal Electronic energy + Delta-G solvation = -27198.104879 eV Core-core repulsion = 23376.079344 eV Total energy + Delta-G solvation = -3822.025535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.26427 -40.50597 -39.61586 -36.37153 -35.73482 -35.17668 -33.38419 -32.76502 -31.72356 -31.46818 -30.24703 -28.64616 -27.44882 -25.87531 -24.21077 -23.10024 -22.38627 -21.62458 -21.41533 -20.74581 -19.32185 -18.47682 -18.08937 -17.65369 -17.03143 -16.80411 -16.42399 -16.20879 -16.05761 -15.64258 -15.51166 -15.37056 -14.81175 -14.56218 -14.40061 -14.18093 -14.10309 -13.94306 -13.60928 -13.53136 -13.47137 -13.13586 -13.02611 -12.75842 -12.49247 -12.41209 -11.79664 -11.77324 -11.66073 -11.58405 -11.28047 -11.26816 -10.91426 -10.63591 -10.48006 -10.33902 -9.79407 -9.51734 -9.50086 -9.14907 -7.99350 -6.01695 0.80673 0.81261 0.87611 1.13371 1.38991 1.44014 1.47972 1.63198 1.77470 2.09094 2.22160 2.50613 2.77058 3.22234 3.26508 3.41019 3.68853 3.94244 4.18622 4.22002 4.28954 4.33260 4.34881 4.39003 4.45302 4.51658 4.59343 4.70178 4.75867 4.78959 4.91110 4.95386 4.96723 5.04024 5.17395 5.30076 5.41216 5.56364 5.59021 5.68436 5.75124 5.83249 5.86588 5.98987 6.00747 6.21959 6.46178 6.50260 6.54467 6.66344 6.90591 7.06186 7.60987 7.71348 9.10331 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011232 B = 0.002617 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.339177 B =10696.403645 C =12071.461166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.247 4.247 3 C 0.241 3.759 4 N -0.375 5.375 5 C 0.090 3.910 6 C -0.262 4.262 7 C 0.208 3.792 8 N -0.724 5.724 9 C 0.511 3.489 10 O -0.558 6.558 11 C -0.117 4.117 12 C 0.084 3.916 13 H 0.023 0.977 14 C -0.484 4.484 15 H 0.048 0.952 16 C 0.022 3.978 17 N -0.918 5.918 18 Si 0.936 3.064 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.267 1.267 22 C -0.045 4.045 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.149 4.149 26 C -0.129 4.129 27 C -0.144 4.144 28 C 0.061 3.939 29 N -0.324 5.324 30 H 0.246 0.754 31 H 0.121 0.879 32 H 0.154 0.846 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.407 0.593 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.253 0.747 40 H 0.116 0.884 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.131 0.869 44 H 0.093 0.907 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.070 2.055 16.334 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.248 4.248 3 C 0.123 3.877 4 N -0.156 5.156 5 C -0.057 4.057 6 C -0.274 4.274 7 C 0.083 3.917 8 N -0.379 5.379 9 C 0.298 3.702 10 O -0.434 6.434 11 C -0.157 4.157 12 C 0.064 3.936 13 H 0.041 0.959 14 C -0.522 4.522 15 H 0.066 0.934 16 C -0.176 4.176 17 N -0.558 5.558 18 Si 0.763 3.237 19 H -0.206 1.206 20 H -0.217 1.217 21 H -0.192 1.192 22 C -0.046 4.046 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.167 4.167 26 C -0.147 4.147 27 C -0.162 4.162 28 C -0.126 4.126 29 N -0.144 5.144 30 H 0.262 0.738 31 H 0.139 0.861 32 H 0.172 0.828 33 H 0.225 0.775 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.243 0.757 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.061 0.939 40 H 0.134 0.866 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.149 0.851 44 H 0.111 0.889 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -14.895 1.428 17.176 22.780 hybrid contribution 1.353 0.496 -0.513 1.529 sum -13.542 1.924 16.663 21.558 Atomic orbital electron populations 1.25825 0.97020 0.98485 0.96525 1.23341 0.95289 1.02553 1.03575 1.18839 0.84182 0.99152 0.85556 1.48792 1.35364 1.10580 1.20884 1.22904 0.93338 1.00570 0.88919 1.19962 1.09968 0.96218 1.01273 1.19189 0.91764 0.98734 0.81986 1.46116 1.14430 1.67693 1.09616 1.20977 0.87737 0.77130 0.84334 1.90744 1.18237 1.50547 1.83861 1.21669 0.98153 1.01951 0.93907 1.17606 0.90963 0.96971 0.88023 0.95879 1.20956 0.95419 1.06522 1.29296 0.93369 1.25497 1.00610 0.96581 0.94944 1.70055 1.21795 1.32596 1.31373 0.85965 0.79642 0.80049 0.78061 1.20562 1.21736 1.19236 1.20606 0.92749 0.94119 0.97135 1.21044 0.98211 0.95902 0.99422 1.21370 0.99274 1.00179 0.93660 1.21254 1.01741 0.94344 0.99327 1.21281 0.97891 0.97695 0.97803 1.21108 1.00059 0.99782 0.95298 1.24140 0.94539 1.00160 0.93748 1.77381 1.24456 0.95914 1.16651 0.73812 0.86122 0.82818 0.77543 0.92232 0.92414 0.75740 0.89418 0.88679 0.93857 0.86555 0.84173 0.83940 0.85124 0.88866 0.78867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 19.25 74.32 1.43 -0.76 16 2 C -0.25 -3.79 13.52 31.12 0.42 -3.37 16 3 C 0.24 2.68 6.99 84.57 0.59 3.27 16 4 N -0.37 -6.68 3.65 -357.15 -1.30 -7.99 16 5 C 0.09 1.52 11.36 83.54 0.95 2.47 16 6 C -0.26 -5.57 5.47 -20.15 -0.11 -5.68 16 7 C 0.21 5.56 6.15 85.63 0.53 6.08 16 8 N -0.72 -21.02 5.55 -466.79 -2.59 -23.61 16 9 C 0.51 20.50 7.58 87.65 0.66 21.16 16 10 O -0.56 -28.91 14.98 -3.05 -0.05 -28.96 16 11 C -0.12 -4.52 4.95 29.85 0.15 -4.37 16 12 C 0.08 4.13 1.67 -12.29 -0.02 4.11 16 13 H 0.02 1.35 6.98 -2.39 -0.02 1.33 16 14 C -0.48 -26.64 6.37 25.60 0.16 -26.48 16 15 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 16 C 0.02 1.29 5.45 84.65 0.46 1.76 16 17 N -0.92 -56.93 12.87 21.45 0.28 -56.65 16 18 Si 0.94 46.72 29.54 68.60 2.03 48.75 16 19 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 20 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 21 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 22 C -0.05 -2.05 4.77 -19.87 -0.09 -2.14 16 23 C -0.13 -5.00 8.86 22.27 0.20 -4.80 16 24 C -0.13 -4.15 10.05 22.27 0.22 -3.93 16 25 C -0.15 -4.67 10.05 22.27 0.22 -4.45 16 26 C -0.13 -4.58 10.05 22.27 0.22 -4.35 16 27 C -0.14 -6.26 9.67 22.27 0.22 -6.05 16 28 C 0.06 1.33 11.96 85.24 1.02 2.35 16 29 N -0.32 -7.56 12.39 -57.02 -0.71 -8.26 16 30 H 0.25 1.59 7.80 -4.43 -0.03 1.56 16 31 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.15 0.57 8.07 -2.39 -0.02 0.55 16 33 H 0.21 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.41 9.44 8.46 -92.71 -0.78 8.66 16 37 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.09 3.27 7.77 -2.38 -0.02 3.26 16 39 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 40 H 0.12 4.36 7.76 -2.91 -0.02 4.34 16 41 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 42 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 43 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 44 H 0.09 4.30 7.95 -2.91 -0.02 4.27 16 45 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -81.33 398.25 5.10 -76.22 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.21 Total: 25.68 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 7.23 Total: -25.18 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -4.33 Total: -96.51 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.05 Total: -28.96 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -81.33 5.10 -76.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834614564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.402 kcal (2) G-P(sol) polarization free energy of solvation -81.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds