Wall clock time and date at job start Tue Mar 31 2020 19:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46556 * 229.22742 * 3 2 1 5 5 C 1.34944 * 126.03608 * 125.31800 * 4 3 2 6 6 C 1.35322 * 107.74743 * 180.14166 * 5 4 3 7 7 C 1.50697 * 126.04102 * 179.86833 * 6 5 4 8 8 N 1.46502 * 109.47038 * 269.71246 * 7 6 5 9 9 C 1.34777 * 119.99559 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31508 * 120.00032 * 353.27812 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 C 1.39870 * 107.91505 * 359.60698 * 6 5 4 29 29 N 1.30834 * 108.20674 * 0.24116 * 28 6 5 30 30 H 4.40634 * 5.51500 * 179.97438 * 4 1 2 31 31 H 1.08995 * 109.47334 * 109.22982 * 3 2 1 32 32 H 1.08999 * 109.47128 * 349.22416 * 3 2 1 33 33 H 1.08004 * 126.13027 * 359.97438 * 5 4 3 34 34 H 1.08998 * 109.46916 * 149.71733 * 7 6 5 35 35 H 1.08995 * 109.46698 * 29.71466 * 7 6 5 36 36 H 0.97002 * 120.00062 * 0.02562 * 8 7 6 37 37 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 38 38 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 39 39 H 0.97008 * 120.00303 * 354.69126 * 17 16 14 40 40 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 41 41 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 42 42 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 43 43 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 45 45 H 1.08001 * 125.89849 * 180.22127 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 0.9030 1.0461 5 6 3.9933 0.5806 2.0352 6 6 4.1871 1.6868 2.7902 7 6 5.0709 1.7864 4.0067 8 7 4.2914 1.4638 5.2044 9 6 4.8787 1.4877 6.4172 10 8 6.0523 1.7766 6.5171 11 6 4.0769 1.1553 7.6492 12 6 4.9743 1.2566 8.8843 13 1 5.8579 0.6342 8.7434 14 6 5.3958 2.6898 9.0830 15 1 4.7695 3.4919 8.7210 16 6 6.5806 2.9770 9.7267 17 7 7.2776 2.0107 10.2834 18 14 7.1922 4.7399 9.8149 19 1 8.4755 4.7819 10.5607 20 1 7.4013 5.2606 8.4400 21 1 6.1856 5.5786 10.5141 22 6 4.2150 0.7836 10.0971 23 6 3.1158 1.4926 10.5443 24 6 2.4166 1.0563 11.6541 25 6 2.8221 -0.0840 12.3222 26 6 3.9245 -0.7901 11.8780 27 6 4.6210 -0.3561 10.7656 28 6 3.4267 2.7229 2.2383 29 7 2.7950 2.2543 1.1928 30 1 -1.0501 0.0000 -0.0003 31 1 3.0092 0.3393 -0.9703 32 1 3.0098 -1.0087 0.1921 33 1 4.4436 -0.3877 2.1971 34 1 5.4617 2.8005 4.0897 35 1 5.8993 1.0843 3.9123 36 1 3.3528 1.2324 5.1244 37 1 3.6861 0.1412 7.5658 38 1 3.2484 1.8573 7.7440 39 1 6.9218 1.1085 10.3087 40 1 2.8014 2.3858 10.0248 41 1 1.5553 1.6078 12.0009 42 1 2.2775 -0.4234 13.1908 43 1 4.2410 -1.6811 12.3997 44 1 5.4821 -0.9079 10.4186 45 1 3.3704 3.7350 2.6110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834614565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:49 Heat of formation + Delta-G solvation = 120.048123 kcal Electronic energy + Delta-G solvation = -27227.825442 eV Core-core repulsion = 23406.574827 eV Total energy + Delta-G solvation = -3821.250616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.49296 -39.06917 -38.22784 -35.51495 -34.51766 -33.90698 -32.10902 -31.36246 -30.65438 -30.09013 -28.96893 -27.80638 -25.63711 -24.30669 -22.75623 -21.65337 -21.64604 -20.61505 -20.20401 -19.42321 -18.73608 -17.34081 -16.81856 -16.25869 -15.87490 -15.77291 -15.28076 -14.91972 -14.82559 -14.26694 -14.15355 -14.01541 -13.63065 -13.57918 -13.38369 -13.03846 -12.85519 -12.57620 -12.42321 -12.30307 -11.95657 -11.80008 -11.40679 -11.14615 -10.93402 -10.82688 -10.68291 -10.65652 -10.40900 -10.09837 -10.00371 -9.72711 -9.64620 -9.19188 -8.68599 -8.54038 -8.48397 -8.22882 -8.11948 -7.61018 -6.18370 -3.86950 1.53151 1.75244 2.20987 2.26513 2.30508 2.50231 2.80911 3.52563 3.55722 3.59280 3.73511 3.74797 3.97685 4.29562 4.54977 4.63835 4.71347 4.74300 4.83543 5.10195 5.29947 5.37527 5.47057 5.55739 5.61294 5.65536 5.71005 5.78387 6.02382 6.04042 6.08461 6.15218 6.20890 6.34036 6.40034 6.45210 6.66878 6.72857 6.81598 6.95455 6.96537 7.07085 7.23414 7.25603 7.40773 7.43772 7.76190 7.88109 8.13118 8.27514 8.56000 9.00918 9.09738 9.81758 11.21133 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.002597 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.074428 B =10777.809524 C =12381.953332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.217 4.217 3 C 0.251 3.749 4 N -0.378 5.378 5 C 0.074 3.926 6 C -0.247 4.247 7 C 0.201 3.799 8 N -0.746 5.746 9 C 0.512 3.488 10 O -0.500 6.500 11 C -0.116 4.116 12 C 0.073 3.927 13 H 0.049 0.951 14 C -0.566 4.566 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.907 5.907 18 Si 1.060 2.940 19 H -0.285 1.285 20 H -0.288 1.288 21 H -0.291 1.291 22 C -0.033 4.033 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.125 4.125 27 C -0.130 4.130 28 C 0.066 3.934 29 N -0.292 5.292 30 H 0.222 0.778 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.177 0.823 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.392 0.608 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.271 0.729 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.969 -6.810 -16.663 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.217 4.217 3 C 0.131 3.869 4 N -0.160 5.160 5 C -0.072 4.072 6 C -0.258 4.258 7 C 0.076 3.924 8 N -0.401 5.401 9 C 0.299 3.701 10 O -0.372 6.372 11 C -0.157 4.157 12 C 0.054 3.946 13 H 0.067 0.933 14 C -0.603 4.603 15 H 0.063 0.937 16 C -0.174 4.174 17 N -0.542 5.542 18 Si 0.889 3.111 19 H -0.210 1.210 20 H -0.214 1.214 21 H -0.218 1.218 22 C -0.033 4.033 23 C -0.124 4.124 24 C -0.149 4.149 25 C -0.171 4.171 26 C -0.143 4.143 27 C -0.149 4.149 28 C -0.121 4.121 29 N -0.111 5.111 30 H 0.239 0.761 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.195 0.805 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.607 -5.479 -17.133 20.882 hybrid contribution -1.456 -1.167 0.169 1.873 sum -12.063 -6.645 -16.964 21.851 Atomic orbital electron populations 1.25040 0.95984 0.98477 0.97842 1.22751 0.94244 1.02166 1.02586 1.18369 0.84846 0.92971 0.90690 1.48543 1.35634 1.08429 1.23388 1.22464 0.94573 1.00440 0.89714 1.20213 1.09037 0.93695 1.02895 1.19302 0.91543 1.01537 0.79997 1.46317 1.13894 1.73836 1.06090 1.20839 0.88552 0.76911 0.83823 1.90751 1.16265 1.44511 1.85685 1.21658 0.99413 1.00386 0.94207 1.17860 0.92423 0.98748 0.85563 0.93251 1.21532 1.08422 0.89682 1.40712 0.93669 1.25570 0.93544 1.05194 0.93075 1.70732 1.39831 1.02523 1.41148 0.83688 0.76199 0.74906 0.76287 1.21000 1.21438 1.21782 1.20876 0.92782 0.91097 0.98589 1.20933 0.95845 0.99165 0.96501 1.21017 1.00057 0.97009 0.96771 1.20821 0.98535 0.97219 1.00525 1.20962 0.96335 0.99744 0.97271 1.21075 0.99848 0.97276 0.96660 1.23947 0.94778 1.00322 0.93080 1.77432 1.23420 0.89648 1.20640 0.76118 0.87490 0.86266 0.80542 0.91024 0.91519 0.77490 0.91791 0.90347 0.91815 0.86670 0.87474 0.87617 0.87480 0.87156 0.79735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 19.25 29.55 0.57 -0.60 16 2 C -0.22 -1.81 13.52 -37.12 -0.50 -2.31 16 3 C 0.25 1.63 6.99 -6.83 -0.05 1.58 16 4 N -0.38 -3.66 3.65 -64.23 -0.23 -3.90 16 5 C 0.07 0.68 11.36 -17.22 -0.20 0.49 16 6 C -0.25 -2.72 5.47 -105.05 -0.57 -3.29 16 7 C 0.20 2.67 6.15 -5.19 -0.03 2.63 16 8 N -0.75 -10.96 5.55 -61.47 -0.34 -11.30 16 9 C 0.51 10.11 7.58 -10.99 -0.08 10.02 16 10 O -0.50 -12.42 15.02 5.55 0.08 -12.33 16 11 C -0.12 -2.26 4.95 -27.88 -0.14 -2.40 16 12 C 0.07 1.75 1.23 -92.92 -0.11 1.64 16 13 H 0.05 1.34 6.59 -51.93 -0.34 1.00 16 14 C -0.57 -15.45 6.35 -34.44 -0.22 -15.67 16 15 H 0.05 1.24 7.82 -52.48 -0.41 0.83 16 16 C 0.03 0.91 5.45 -17.83 -0.10 0.82 16 17 N -0.91 -27.83 13.56 55.43 0.75 -27.08 16 18 Si 1.06 26.39 29.91 -169.99 -5.08 21.31 16 19 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 C -0.03 -0.73 4.53 -104.62 -0.47 -1.20 16 23 C -0.11 -2.19 8.90 -39.58 -0.35 -2.54 16 24 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 25 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 26 C -0.12 -2.30 10.05 -39.58 -0.40 -2.70 16 27 C -0.13 -2.73 9.18 -39.58 -0.36 -3.10 16 28 C 0.07 0.75 11.96 -17.37 -0.21 0.54 16 29 N -0.29 -3.55 12.39 30.62 0.38 -3.17 16 30 H 0.22 0.91 7.80 -54.08 -0.42 0.49 16 31 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.12 0.38 8.07 -51.93 -0.42 -0.04 16 33 H 0.18 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.39 4.84 8.46 -40.82 -0.35 4.49 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.43 7.96 -51.93 -0.41 1.02 16 39 H 0.27 8.16 6.24 -40.82 -0.25 7.91 16 40 H 0.12 2.32 7.85 -52.48 -0.41 1.91 16 41 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.11 2.27 7.95 -52.49 -0.42 1.86 16 45 H 0.19 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 396.02 15.07 5.97 5.97 Total: -1.00 -36.78 396.02 -8.54 -45.32 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.04 Total: 7.12 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -4.03 Total: -21.92 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.56 Total: -45.45 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.33 kcal Atomic # 14 Polarization: 26.39 SS G_CDS: -5.08 Total: 21.31 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.78 -8.54 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834614565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.365 kcal (2) G-P(sol) polarization free energy of solvation -36.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds