Wall clock time and date at job start Tue Mar 31 2020 19:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46556 * 229.22742 * 3 2 1 5 5 C 1.34944 * 126.03608 * 125.31800 * 4 3 2 6 6 C 1.35322 * 107.74743 * 180.14166 * 5 4 3 7 7 C 1.50697 * 126.04102 * 179.86833 * 6 5 4 8 8 N 1.46502 * 109.47038 * 269.71246 * 7 6 5 9 9 C 1.34777 * 119.99559 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31508 * 120.00032 * 353.27812 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 C 1.39870 * 107.91505 * 359.60698 * 6 5 4 29 29 N 1.30834 * 108.20674 * 0.24116 * 28 6 5 30 30 H 4.40634 * 5.51500 * 179.97438 * 4 1 2 31 31 H 1.08995 * 109.47334 * 109.22982 * 3 2 1 32 32 H 1.08999 * 109.47128 * 349.22416 * 3 2 1 33 33 H 1.08004 * 126.13027 * 359.97438 * 5 4 3 34 34 H 1.08998 * 109.46916 * 149.71733 * 7 6 5 35 35 H 1.08995 * 109.46698 * 29.71466 * 7 6 5 36 36 H 0.97002 * 120.00062 * 0.02562 * 8 7 6 37 37 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 38 38 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 39 39 H 0.97008 * 120.00303 * 354.69126 * 17 16 14 40 40 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 41 41 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 42 42 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 43 43 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 45 45 H 1.08001 * 125.89849 * 180.22127 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 0.9030 1.0461 5 6 3.9933 0.5806 2.0352 6 6 4.1871 1.6868 2.7902 7 6 5.0709 1.7864 4.0067 8 7 4.2914 1.4638 5.2044 9 6 4.8787 1.4877 6.4172 10 8 6.0523 1.7766 6.5171 11 6 4.0769 1.1553 7.6492 12 6 4.9743 1.2566 8.8843 13 1 5.8579 0.6342 8.7434 14 6 5.3958 2.6898 9.0830 15 1 4.7695 3.4919 8.7210 16 6 6.5806 2.9770 9.7267 17 7 7.2776 2.0107 10.2834 18 14 7.1922 4.7399 9.8149 19 1 8.4755 4.7819 10.5607 20 1 7.4013 5.2606 8.4400 21 1 6.1856 5.5786 10.5141 22 6 4.2150 0.7836 10.0971 23 6 3.1158 1.4926 10.5443 24 6 2.4166 1.0563 11.6541 25 6 2.8221 -0.0840 12.3222 26 6 3.9245 -0.7901 11.8780 27 6 4.6210 -0.3561 10.7656 28 6 3.4267 2.7229 2.2383 29 7 2.7950 2.2543 1.1928 30 1 -1.0501 0.0000 -0.0003 31 1 3.0092 0.3393 -0.9703 32 1 3.0098 -1.0087 0.1921 33 1 4.4436 -0.3877 2.1971 34 1 5.4617 2.8005 4.0897 35 1 5.8993 1.0843 3.9123 36 1 3.3528 1.2324 5.1244 37 1 3.6861 0.1412 7.5658 38 1 3.2484 1.8573 7.7440 39 1 6.9218 1.1085 10.3087 40 1 2.8014 2.3858 10.0248 41 1 1.5553 1.6078 12.0009 42 1 2.2775 -0.4234 13.1908 43 1 4.2410 -1.6811 12.3997 44 1 5.4821 -0.9079 10.4186 45 1 3.3704 3.7350 2.6110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834614565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:48 Heat of formation + Delta-G solvation = 97.203922 kcal Electronic energy + Delta-G solvation = -27228.816041 eV Core-core repulsion = 23406.574827 eV Total energy + Delta-G solvation = -3822.241215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.29283 -40.65829 -39.75328 -36.48953 -35.96615 -35.25900 -33.29284 -32.78183 -31.76505 -31.58894 -30.36699 -28.63896 -27.12440 -25.81007 -24.40847 -23.17615 -22.41202 -21.79473 -21.45582 -21.00889 -19.35867 -18.81014 -18.13124 -17.71107 -17.14149 -16.83033 -16.47645 -16.25732 -15.79402 -15.62575 -15.61382 -15.49073 -14.91453 -14.67256 -14.52455 -14.25389 -14.14822 -14.03257 -13.88565 -13.62911 -13.41289 -13.23653 -13.03326 -12.61128 -12.57493 -12.05137 -11.93420 -11.79403 -11.70108 -11.60991 -11.47546 -11.29696 -10.78414 -10.55878 -10.50338 -10.35646 -9.87906 -9.62882 -9.53896 -9.24600 -8.41234 -6.07812 0.69090 0.74766 0.79882 1.11353 1.50463 1.59265 1.60890 1.75996 1.76661 1.97029 2.20501 2.65056 2.68356 3.12549 3.24930 3.39571 3.66219 3.91630 4.11725 4.15723 4.19870 4.24223 4.30288 4.32777 4.33702 4.46050 4.47363 4.53914 4.65674 4.73389 4.84034 4.86008 4.90187 4.93529 5.12992 5.15446 5.25834 5.42608 5.46028 5.55558 5.66778 5.75847 5.83928 5.97800 5.99040 6.27042 6.33297 6.43405 6.52998 6.63883 6.79548 6.82946 7.59629 7.67196 8.99122 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.002597 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.074428 B =10777.809524 C =12381.953332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.247 4.247 3 C 0.241 3.759 4 N -0.375 5.375 5 C 0.093 3.907 6 C -0.264 4.264 7 C 0.207 3.793 8 N -0.722 5.722 9 C 0.512 3.488 10 O -0.561 6.561 11 C -0.111 4.111 12 C 0.076 3.924 13 H 0.006 0.994 14 C -0.556 4.556 15 H 0.038 0.962 16 C -0.025 4.025 17 N -0.944 5.944 18 Si 1.096 2.904 19 H -0.289 1.289 20 H -0.284 1.284 21 H -0.268 1.268 22 C -0.057 4.057 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.145 4.145 26 C -0.125 4.125 27 C -0.152 4.152 28 C 0.059 3.941 29 N -0.323 5.323 30 H 0.245 0.755 31 H 0.121 0.879 32 H 0.156 0.844 33 H 0.211 0.789 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.408 0.592 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.261 0.739 40 H 0.113 0.887 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.097 0.903 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.669 -7.757 -16.733 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.248 4.248 3 C 0.123 3.877 4 N -0.156 5.156 5 C -0.055 4.055 6 C -0.276 4.276 7 C 0.083 3.917 8 N -0.376 5.376 9 C 0.299 3.701 10 O -0.438 6.438 11 C -0.151 4.151 12 C 0.056 3.944 13 H 0.024 0.976 14 C -0.594 4.594 15 H 0.057 0.943 16 C -0.224 4.224 17 N -0.582 5.582 18 Si 0.921 3.079 19 H -0.215 1.215 20 H -0.211 1.211 21 H -0.193 1.193 22 C -0.057 4.057 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.162 4.162 26 C -0.143 4.143 27 C -0.171 4.171 28 C -0.127 4.127 29 N -0.144 5.144 30 H 0.262 0.738 31 H 0.139 0.861 32 H 0.173 0.827 33 H 0.228 0.772 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.243 0.757 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.131 0.869 41 H 0.159 0.841 42 H 0.164 0.836 43 H 0.153 0.847 44 H 0.115 0.885 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -13.393 -6.430 -17.260 22.773 hybrid contribution -0.766 -0.993 0.099 1.258 sum -14.159 -7.423 -17.161 23.453 Atomic orbital electron populations 1.25835 0.97039 0.97898 0.97130 1.23345 0.95305 1.02806 1.03301 1.18854 0.84155 0.94146 0.90555 1.48806 1.35094 1.07928 1.23754 1.22918 0.93189 1.01029 0.88360 1.19948 1.10035 0.94760 1.02829 1.19213 0.91833 1.00473 0.80177 1.46097 1.14565 1.71747 1.05184 1.20915 0.87735 0.76227 0.85220 1.90732 1.18684 1.47700 1.86684 1.21562 0.98756 1.02430 0.92396 1.17675 0.92100 0.96028 0.88551 0.97623 1.21797 1.07761 0.91356 1.38512 0.94329 1.26716 0.94623 1.07671 0.93359 1.70814 1.40807 1.02575 1.44037 0.83212 0.76149 0.72014 0.76515 1.21498 1.21064 1.19344 1.20662 0.94144 0.92645 0.98277 1.21011 0.95977 0.99208 0.97895 1.21404 1.00372 0.97194 0.95393 1.21305 0.97728 0.96211 1.01002 1.21303 0.96178 1.00668 0.96143 1.21138 1.00200 0.97604 0.98120 1.24125 0.94660 1.00882 0.93049 1.77387 1.24491 0.91305 1.21210 0.73840 0.86112 0.82663 0.77241 0.92686 0.91703 0.75678 0.89075 0.88882 0.92895 0.86921 0.84058 0.83590 0.84657 0.88510 0.79121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 19.25 74.32 1.43 -0.73 16 2 C -0.25 -3.70 13.52 31.12 0.42 -3.28 16 3 C 0.24 2.54 6.99 84.57 0.59 3.13 16 4 N -0.37 -6.50 3.65 -357.14 -1.30 -7.81 16 5 C 0.09 1.49 11.36 83.54 0.95 2.43 16 6 C -0.26 -5.53 5.47 -20.14 -0.11 -5.64 16 7 C 0.21 5.49 6.15 85.63 0.53 6.02 16 8 N -0.72 -20.91 5.55 -466.79 -2.59 -23.50 16 9 C 0.51 20.60 7.58 87.66 0.66 21.26 16 10 O -0.56 -29.15 15.02 -3.04 -0.05 -29.19 16 11 C -0.11 -4.36 4.95 29.85 0.15 -4.21 16 12 C 0.08 3.76 1.23 -12.28 -0.02 3.75 16 13 H 0.01 0.32 6.59 -2.39 -0.02 0.31 16 14 C -0.56 -31.34 6.35 25.60 0.16 -31.17 16 15 H 0.04 2.16 7.82 -2.91 -0.02 2.14 16 16 C -0.03 -1.52 5.45 84.65 0.46 -1.06 16 17 N -0.94 -60.57 13.56 21.44 0.29 -60.28 16 18 Si 1.10 54.49 29.91 68.60 2.05 56.55 16 19 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 20 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 22 C -0.06 -2.55 4.53 -19.87 -0.09 -2.64 16 23 C -0.12 -4.93 8.90 22.27 0.20 -4.73 16 24 C -0.13 -4.17 10.05 22.27 0.22 -3.94 16 25 C -0.14 -4.50 10.05 22.27 0.22 -4.28 16 26 C -0.13 -4.35 10.05 22.27 0.22 -4.12 16 27 C -0.15 -6.46 9.18 22.27 0.20 -6.26 16 28 C 0.06 1.32 11.96 85.24 1.02 2.34 16 29 N -0.32 -7.56 12.39 -57.02 -0.71 -8.27 16 30 H 0.25 1.56 7.80 -4.41 -0.03 1.53 16 31 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.16 0.44 8.07 -2.39 -0.02 0.42 16 33 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.41 9.45 8.46 -92.71 -0.78 8.66 16 37 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.09 3.35 7.96 -2.39 -0.02 3.33 16 39 H 0.26 16.68 6.24 -92.70 -0.58 16.10 16 40 H 0.11 4.46 7.85 -2.91 -0.02 4.44 16 41 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 42 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 44 H 0.10 4.23 7.95 -2.91 -0.02 4.21 16 45 H 0.19 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -84.52 396.02 5.33 -79.18 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.41 Total: 26.45 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 7.23 Total: -33.14 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -4.31 Total: -99.85 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.05 Total: -29.19 kcal Atomic # 14 Polarization: 54.49 SS G_CDS: 2.05 Total: 56.55 kcal Total: -84.52 5.33 -79.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834614565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.388 kcal (2) G-P(sol) polarization free energy of solvation -84.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds