Wall clock time and date at job start Tue Mar 31 2020 19:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46889 * 2 1 4 4 N 1.46907 * 109.46806 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46965 * 119.99778 * 2 1 3 6 6 C 1.34773 * 119.99878 * 301.97574 * 5 2 1 7 7 O 1.21593 * 120.00614 * 4.43874 * 6 5 2 8 8 N 1.34778 * 120.00226 * 184.43617 * 6 5 2 9 9 C 1.40132 * 120.00721 * 174.37482 * 8 6 5 10 10 C 1.38698 * 120.07189 * 336.22032 * 9 8 6 11 11 C 1.38197 * 120.02056 * 179.76125 * 10 9 8 12 12 C 1.38550 * 120.17444 * 0.51329 * 11 10 9 13 13 F 1.35094 * 119.92570 * 179.75952 * 12 11 10 14 14 C 1.38346 * 120.15024 * 359.74461 * 12 11 10 15 15 C 1.38738 * 119.97749 * 359.97438 * 14 12 11 16 16 O 1.35780 * 120.08751 * 179.97438 * 15 14 12 17 17 C 1.34801 * 116.99716 * 6.50840 * 16 15 14 18 18 H 1.08001 * 120.00484 * 5.76649 * 17 16 15 19 19 C 1.38640 * 119.99469 * 185.76305 * 17 16 15 20 20 N 1.31579 * 119.99655 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00236 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47026 * 90.00113 * 21 19 17 23 23 H 1.48500 * 109.47133 * 209.99553 * 21 19 17 24 24 H 1.48490 * 109.47266 * 330.00220 * 21 19 17 25 25 C 1.52994 * 109.47274 * 239.99749 * 2 1 3 26 26 C 1.53001 * 117.50053 * 10.58989 * 25 2 1 27 27 C 1.53000 * 60.00310 * 252.51052 * 26 25 2 28 28 H 1.08999 * 109.47090 * 60.00511 * 1 2 3 29 29 H 1.08996 * 109.47008 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47067 * 299.99889 * 1 2 3 31 31 H 1.08993 * 109.47122 * 60.00254 * 3 2 1 32 32 H 1.08999 * 109.46837 * 299.99643 * 3 2 1 33 33 H 1.00892 * 110.99640 * 179.97438 * 4 3 2 34 34 H 1.00891 * 111.00295 * 303.95442 * 4 3 2 35 35 H 0.97001 * 120.00136 * 121.98385 * 5 2 1 36 36 H 0.97006 * 119.99783 * 354.37806 * 8 6 5 37 37 H 1.07999 * 119.98894 * 0.02562 * 10 9 8 38 38 H 1.07994 * 119.91607 * 180.22866 * 11 10 9 39 39 H 1.08001 * 120.01307 * 180.02562 * 14 12 11 40 40 H 0.96996 * 119.99684 * 180.02562 * 20 19 17 41 41 H 1.09005 * 115.54865 * 156.30190 * 25 2 1 42 42 H 1.08998 * 117.49606 * 0.02562 * 26 25 2 43 43 H 1.09000 * 117.49936 * 145.01684 * 26 25 2 44 44 H 1.09001 * 117.49990 * 252.51260 * 27 26 25 45 45 H 1.09000 * 117.49983 * 107.48825 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 0.0006 5 7 2.0183 -0.6906 1.1962 6 6 1.6601 -0.2538 2.4199 7 8 0.8683 0.6623 2.5308 8 7 2.1797 -0.8323 3.5207 9 6 1.9003 -0.3039 4.7882 10 6 1.5355 1.0276 4.9212 11 6 1.2555 1.5463 6.1711 12 6 1.3483 0.7422 7.2955 13 9 1.0781 1.2557 8.5155 14 6 1.7166 -0.5856 7.1718 15 6 1.9935 -1.1143 5.9194 16 8 2.3558 -2.4171 5.7954 17 6 2.2975 -3.1769 6.9073 18 1 1.8861 -2.7694 7.8190 19 6 2.7656 -4.4816 6.8805 20 7 2.7082 -5.2235 7.9657 21 14 3.4777 -5.1863 5.3040 22 1 4.9388 -4.9242 5.2603 23 1 3.2362 -6.6509 5.2630 24 1 2.8245 -4.5439 4.1354 25 6 2.0400 -0.7213 -1.2491 26 6 1.0178 -1.0607 -2.3358 27 6 1.5981 -2.1712 -1.4577 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.8705 2.3845 0.0002 34 1 3.8703 0.9166 0.7821 35 1 2.5995 -1.4621 1.1076 36 1 2.7470 -1.6145 3.4357 37 1 1.4662 1.6582 4.0471 38 1 0.9680 2.5824 6.2722 39 1 1.7879 -1.2105 8.0498 40 1 3.0360 -6.1362 7.9471 41 1 3.0458 -0.4505 -1.5707 42 1 -0.0180 -0.7698 -2.1609 43 1 1.3508 -1.0131 -3.3726 44 1 2.3129 -2.8541 -1.9168 45 1 0.9439 -2.6112 -0.7050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841144533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:15 Heat of formation + Delta-G solvation = -35.202736 kcal Electronic energy + Delta-G solvation = -29881.766459 eV Core-core repulsion = 25623.014436 eV Total energy + Delta-G solvation = -4258.752023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.28037 -40.86032 -39.49952 -38.29692 -36.52380 -35.06093 -34.24349 -33.08947 -32.52121 -30.36210 -29.57146 -28.15940 -25.61451 -25.40536 -23.64234 -22.62970 -22.44905 -21.66751 -20.57813 -19.37610 -18.42093 -18.26657 -17.81743 -16.82058 -16.52209 -15.80439 -15.65868 -15.35713 -15.18309 -15.09094 -14.95060 -14.76932 -14.22593 -14.13109 -13.88046 -13.55869 -13.52501 -13.29766 -12.94748 -12.49271 -12.45406 -12.32475 -12.27773 -11.89752 -11.67040 -11.51190 -11.37504 -11.31365 -10.97740 -10.80926 -10.55475 -10.49976 -10.35811 -9.96305 -9.77007 -9.50519 -9.15246 -9.02145 -8.69706 -7.97835 -7.18948 -6.56076 -4.23049 1.74935 2.00239 2.64378 3.07992 3.11764 3.20060 3.25709 3.64344 4.06529 4.23786 4.25507 4.30504 4.46327 4.54888 4.65887 4.83084 4.92010 4.95248 4.98186 5.08994 5.31374 5.41792 5.46828 5.52519 5.65149 5.67321 5.68024 5.72691 5.82306 5.89796 5.92336 6.03850 6.10462 6.27782 6.44951 6.57159 6.61239 6.80863 6.87198 6.93878 6.98790 7.14065 7.25868 7.44252 7.63611 7.85733 8.09773 8.67197 8.77020 9.31962 10.51296 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.009974 B = 0.004071 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.563365 B = 6876.937753 C = 9115.790924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.231 3.769 3 C 0.052 3.948 4 N -0.847 5.847 5 N -0.737 5.737 6 C 0.703 3.297 7 O -0.577 6.577 8 N -0.667 5.667 9 C 0.085 3.915 10 C -0.065 4.065 11 C -0.217 4.217 12 C 0.123 3.877 13 F -0.150 7.150 14 C -0.242 4.242 15 C 0.159 3.841 16 O -0.211 6.211 17 C -0.390 4.390 18 H 0.108 0.892 19 C 0.065 3.935 20 N -0.872 5.872 21 Si 0.907 3.093 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.261 1.261 25 C -0.149 4.149 26 C -0.174 4.174 27 C -0.181 4.181 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.339 0.661 34 H 0.340 0.660 35 H 0.398 0.602 36 H 0.409 0.591 37 H 0.151 0.849 38 H 0.123 0.877 39 H 0.149 0.851 40 H 0.281 0.719 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.295 9.080 -17.687 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.144 3.856 3 C -0.080 4.080 4 N -0.376 5.376 5 N -0.392 5.392 6 C 0.404 3.596 7 O -0.455 6.455 8 N -0.313 5.313 9 C -0.010 4.010 10 C -0.086 4.086 11 C -0.237 4.237 12 C 0.103 3.897 13 F -0.128 7.128 14 C -0.263 4.263 15 C 0.104 3.896 16 O -0.116 6.116 17 C -0.465 4.465 18 H 0.125 0.875 19 C -0.139 4.139 20 N -0.509 5.509 21 Si 0.732 3.268 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.185 1.185 25 C -0.168 4.168 26 C -0.212 4.212 27 C -0.218 4.218 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.232 0.768 36 H 0.244 0.756 37 H 0.169 0.831 38 H 0.141 0.859 39 H 0.166 0.834 40 H 0.092 0.908 41 H 0.141 0.859 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.356 9.182 -18.380 20.549 hybrid contribution 0.706 -0.806 0.759 1.313 sum 0.350 8.376 -17.621 19.513 Atomic orbital electron populations 1.22419 0.94186 1.02617 1.03866 1.19585 0.93479 0.90715 0.81798 1.22154 0.88343 0.95753 1.01734 1.58730 1.07561 1.19700 1.51621 1.45299 1.54873 1.35254 1.03794 1.15906 0.80778 0.82658 0.80223 1.90787 1.37199 1.32227 1.85329 1.42321 1.52266 1.33239 1.03444 1.16704 1.10686 0.92160 0.81418 1.20830 0.97770 0.92444 0.97538 1.20562 1.11765 1.00165 0.91251 1.17473 1.00545 0.92089 0.79620 1.91422 1.91606 1.87359 1.42453 1.20962 1.11732 0.94735 0.98864 1.18435 0.95587 0.84297 0.91243 1.83505 1.75559 1.15456 1.37107 1.20741 1.42296 0.94073 0.89375 0.87454 1.24478 0.96097 0.95020 0.98309 1.69647 1.44384 1.09514 1.27349 0.86181 0.79666 0.78215 0.82743 1.19763 1.20606 1.18543 1.22478 1.00587 0.97309 0.96416 1.23102 0.99090 1.03197 0.95776 1.22979 1.04030 0.91427 1.03380 0.91819 0.92450 0.89219 0.92939 0.90550 0.84930 0.84769 0.76803 0.75634 0.83132 0.85858 0.83380 0.90822 0.85934 0.88076 0.88832 0.88764 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 6.98 37.16 0.26 -1.62 16 2 C 0.23 2.33 0.64 -131.82 -0.08 2.25 16 3 C 0.05 0.53 5.57 -3.82 -0.02 0.51 16 4 N -0.85 -7.71 8.81 -10.37 -0.09 -7.81 16 5 N -0.74 -8.27 4.29 -52.41 -0.22 -8.50 16 6 C 0.70 10.38 7.79 -86.92 -0.68 9.70 16 7 O -0.58 -9.67 9.69 5.28 0.05 -9.62 16 8 N -0.67 -10.81 5.31 -14.07 -0.07 -10.88 16 9 C 0.09 1.62 6.47 -83.44 -0.54 1.08 16 10 C -0.07 -1.16 8.73 -39.43 -0.34 -1.51 16 11 C -0.22 -3.84 10.02 -39.48 -0.40 -4.24 16 12 C 0.12 2.40 7.29 -39.43 -0.29 2.11 16 13 F -0.15 -2.86 17.26 2.25 0.04 -2.82 16 14 C -0.24 -5.20 9.10 -39.36 -0.36 -5.55 16 15 C 0.16 3.44 6.66 -38.94 -0.26 3.18 16 16 O -0.21 -5.03 7.98 0.04 0.00 -5.03 16 17 C -0.39 -10.31 9.89 30.88 0.31 -10.00 16 18 H 0.11 2.97 5.55 -52.49 -0.29 2.68 16 19 C 0.07 1.72 5.49 -17.51 -0.10 1.63 16 20 N -0.87 -24.10 13.96 55.48 0.77 -23.33 16 21 Si 0.91 19.87 28.62 -169.99 -4.86 15.01 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 25 C -0.15 -1.29 5.02 -90.62 -0.45 -1.75 16 26 C -0.17 -1.35 9.60 -26.73 -0.26 -1.61 16 27 C -0.18 -1.50 9.70 -26.73 -0.26 -1.76 16 28 H 0.06 0.58 6.88 -51.93 -0.36 0.22 16 29 H 0.06 0.63 7.03 -51.93 -0.37 0.27 16 30 H 0.09 1.23 5.88 -51.93 -0.31 0.92 16 31 H 0.05 0.66 6.47 -51.93 -0.34 0.32 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.34 2.69 9.08 -39.30 -0.36 2.34 16 34 H 0.34 3.33 8.30 -39.30 -0.33 3.00 16 35 H 0.40 3.94 8.41 -40.82 -0.34 3.59 16 36 H 0.41 6.24 8.34 -40.82 -0.34 5.90 16 37 H 0.15 2.59 5.71 -52.49 -0.30 2.29 16 38 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.15 3.35 5.73 -52.49 -0.30 3.05 16 40 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.12 1.12 7.52 -51.93 -0.39 0.73 16 42 H 0.10 0.78 5.86 -51.93 -0.30 0.47 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.88 7.48 -51.93 -0.39 0.49 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -27.99 365.23 -7.89 -35.88 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -5.53 Total: 19.18 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -3.47 Total: -7.58 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.38 Total: -50.51 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.05 Total: -14.65 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.86 Total: 15.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.99 -7.89 -35.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841144533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.678 kcal (2) G-P(sol) polarization free energy of solvation -27.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds