Wall clock time and date at job start Tue Mar 31 2020 19:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46889 * 2 1 4 4 N 1.46907 * 109.46806 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46965 * 119.99778 * 2 1 3 6 6 C 1.34773 * 119.99878 * 301.97574 * 5 2 1 7 7 O 1.21593 * 120.00614 * 4.43874 * 6 5 2 8 8 N 1.34778 * 120.00226 * 184.43617 * 6 5 2 9 9 C 1.40132 * 120.00721 * 174.37482 * 8 6 5 10 10 C 1.38698 * 120.07189 * 336.22032 * 9 8 6 11 11 C 1.38197 * 120.02056 * 179.76125 * 10 9 8 12 12 C 1.38550 * 120.17444 * 0.51329 * 11 10 9 13 13 F 1.35094 * 119.92570 * 179.75952 * 12 11 10 14 14 C 1.38346 * 120.15024 * 359.74461 * 12 11 10 15 15 C 1.38738 * 119.97749 * 359.97438 * 14 12 11 16 16 O 1.35780 * 120.08751 * 179.97438 * 15 14 12 17 17 C 1.34801 * 116.99716 * 6.50840 * 16 15 14 18 18 H 1.08001 * 120.00484 * 5.76649 * 17 16 15 19 19 C 1.38640 * 119.99469 * 185.76305 * 17 16 15 20 20 N 1.31579 * 119.99655 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00236 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47026 * 90.00113 * 21 19 17 23 23 H 1.48500 * 109.47133 * 209.99553 * 21 19 17 24 24 H 1.48490 * 109.47266 * 330.00220 * 21 19 17 25 25 C 1.52994 * 109.47274 * 239.99749 * 2 1 3 26 26 C 1.53001 * 117.50053 * 10.58989 * 25 2 1 27 27 C 1.53000 * 60.00310 * 252.51052 * 26 25 2 28 28 H 1.08999 * 109.47090 * 60.00511 * 1 2 3 29 29 H 1.08996 * 109.47008 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47067 * 299.99889 * 1 2 3 31 31 H 1.08993 * 109.47122 * 60.00254 * 3 2 1 32 32 H 1.08999 * 109.46837 * 299.99643 * 3 2 1 33 33 H 1.00892 * 110.99640 * 179.97438 * 4 3 2 34 34 H 1.00891 * 111.00295 * 303.95442 * 4 3 2 35 35 H 0.97001 * 120.00136 * 121.98385 * 5 2 1 36 36 H 0.97006 * 119.99783 * 354.37806 * 8 6 5 37 37 H 1.07999 * 119.98894 * 0.02562 * 10 9 8 38 38 H 1.07994 * 119.91607 * 180.22866 * 11 10 9 39 39 H 1.08001 * 120.01307 * 180.02562 * 14 12 11 40 40 H 0.96996 * 119.99684 * 180.02562 * 20 19 17 41 41 H 1.09005 * 115.54865 * 156.30190 * 25 2 1 42 42 H 1.08998 * 117.49606 * 0.02562 * 26 25 2 43 43 H 1.09000 * 117.49936 * 145.01684 * 26 25 2 44 44 H 1.09001 * 117.49990 * 252.51260 * 27 26 25 45 45 H 1.09000 * 117.49983 * 107.48825 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 0.0006 5 7 2.0183 -0.6906 1.1962 6 6 1.6601 -0.2538 2.4199 7 8 0.8683 0.6623 2.5308 8 7 2.1797 -0.8323 3.5207 9 6 1.9003 -0.3039 4.7882 10 6 1.5355 1.0276 4.9212 11 6 1.2555 1.5463 6.1711 12 6 1.3483 0.7422 7.2955 13 9 1.0781 1.2557 8.5155 14 6 1.7166 -0.5856 7.1718 15 6 1.9935 -1.1143 5.9194 16 8 2.3558 -2.4171 5.7954 17 6 2.2975 -3.1769 6.9073 18 1 1.8861 -2.7694 7.8190 19 6 2.7656 -4.4816 6.8805 20 7 2.7082 -5.2235 7.9657 21 14 3.4777 -5.1863 5.3040 22 1 4.9388 -4.9242 5.2603 23 1 3.2362 -6.6509 5.2630 24 1 2.8245 -4.5439 4.1354 25 6 2.0400 -0.7213 -1.2491 26 6 1.0178 -1.0607 -2.3358 27 6 1.5981 -2.1712 -1.4577 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.8705 2.3845 0.0002 34 1 3.8703 0.9166 0.7821 35 1 2.5995 -1.4621 1.1076 36 1 2.7470 -1.6145 3.4357 37 1 1.4662 1.6582 4.0471 38 1 0.9680 2.5824 6.2722 39 1 1.7879 -1.2105 8.0498 40 1 3.0360 -6.1362 7.9471 41 1 3.0458 -0.4505 -1.5707 42 1 -0.0180 -0.7698 -2.1609 43 1 1.3508 -1.0131 -3.3726 44 1 2.3129 -2.8541 -1.9168 45 1 0.9439 -2.6112 -0.7050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841144533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:14 Heat of formation + Delta-G solvation = -53.989484 kcal Electronic energy + Delta-G solvation = -29882.581114 eV Core-core repulsion = 25623.014436 eV Total energy + Delta-G solvation = -4259.566677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.84605 -42.05898 -40.90415 -39.44336 -38.05958 -35.94788 -35.53669 -34.47523 -34.03280 -31.37816 -31.14515 -29.60504 -27.33583 -26.39298 -24.63734 -23.96136 -23.21951 -23.09197 -21.80809 -20.39739 -20.02788 -19.73192 -19.26975 -18.20000 -17.48036 -17.16891 -16.85952 -16.76953 -16.55907 -16.13156 -16.05442 -15.87465 -15.79857 -15.56615 -15.28906 -15.21389 -14.95028 -14.32690 -14.23969 -13.91471 -13.71560 -13.59070 -13.30775 -13.14585 -13.08693 -12.65650 -12.44391 -12.40286 -12.17354 -12.07559 -12.06028 -11.66463 -11.36032 -11.20765 -11.03238 -10.94242 -10.76652 -10.15278 -9.61670 -9.48976 -8.73612 -8.51977 -6.25898 0.17863 0.40062 1.33202 1.38051 1.50844 1.52808 2.01473 2.26167 2.63139 2.80285 2.89466 2.98962 3.25604 3.38853 3.53729 3.73262 3.89302 3.92533 4.13557 4.16193 4.23779 4.27530 4.32221 4.49016 4.58759 4.70113 4.77409 4.85168 4.86651 4.92197 4.98969 5.06887 5.09910 5.17965 5.28621 5.32588 5.34242 5.46649 5.49226 5.59833 5.64284 5.82017 5.94452 6.09689 6.19225 6.54483 6.79768 6.95750 7.39622 7.50812 8.59202 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.009974 B = 0.004071 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.563365 B = 6876.937753 C = 9115.790924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.230 3.770 3 C 0.057 3.943 4 N -0.841 5.841 5 N -0.720 5.720 6 C 0.704 3.296 7 O -0.594 6.594 8 N -0.668 5.668 9 C 0.101 3.899 10 C -0.063 4.063 11 C -0.189 4.189 12 C 0.110 3.890 13 F -0.148 7.148 14 C -0.253 4.253 15 C 0.133 3.867 16 O -0.222 6.222 17 C -0.400 4.400 18 H 0.077 0.923 19 C 0.012 3.988 20 N -0.921 5.921 21 Si 0.973 3.027 22 H -0.263 1.263 23 H -0.275 1.275 24 H -0.247 1.247 25 C -0.148 4.148 26 C -0.166 4.166 27 C -0.182 4.182 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.087 0.913 33 H 0.347 0.653 34 H 0.337 0.663 35 H 0.407 0.593 36 H 0.414 0.586 37 H 0.167 0.833 38 H 0.158 0.842 39 H 0.125 0.875 40 H 0.286 0.714 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.693 10.375 -21.213 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.144 3.856 3 C -0.075 4.075 4 N -0.371 5.371 5 N -0.375 5.375 6 C 0.405 3.595 7 O -0.474 6.474 8 N -0.314 5.314 9 C 0.005 3.995 10 C -0.084 4.084 11 C -0.209 4.209 12 C 0.090 3.910 13 F -0.127 7.127 14 C -0.274 4.274 15 C 0.080 3.920 16 O -0.128 6.128 17 C -0.476 4.476 18 H 0.094 0.906 19 C -0.187 4.187 20 N -0.560 5.560 21 Si 0.794 3.206 22 H -0.187 1.187 23 H -0.200 1.200 24 H -0.170 1.170 25 C -0.167 4.167 26 C -0.203 4.203 27 C -0.219 4.219 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.243 0.757 36 H 0.250 0.750 37 H 0.184 0.816 38 H 0.176 0.824 39 H 0.142 0.858 40 H 0.095 0.905 41 H 0.141 0.859 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.044 10.515 -21.952 24.341 hybrid contribution 0.479 -0.931 1.808 2.089 sum 0.523 9.584 -20.144 22.314 Atomic orbital electron populations 1.22361 0.94643 1.02234 1.03423 1.19706 0.93108 0.91007 0.81792 1.22070 0.88887 0.95397 1.01120 1.58736 1.06798 1.20280 1.51259 1.45256 1.54152 1.35179 1.02923 1.15975 0.80486 0.82338 0.80660 1.90780 1.37946 1.33043 1.85666 1.42341 1.52587 1.33599 1.02910 1.16830 1.08625 0.92182 0.81879 1.21076 0.97213 0.91993 0.98124 1.20956 1.08436 1.01321 0.90152 1.17520 1.01456 0.91586 0.80437 1.91424 1.91640 1.87134 1.42476 1.20955 1.12386 0.95679 0.98381 1.18741 0.96813 0.84133 0.92276 1.83448 1.77541 1.16247 1.35601 1.20607 1.42730 0.94968 0.89317 0.90588 1.25356 0.96407 0.95117 1.01864 1.69749 1.46429 1.10153 1.29707 0.85192 0.79234 0.77519 0.78690 1.18746 1.19986 1.17005 1.22332 1.00851 0.97557 0.95950 1.23186 0.98841 1.02126 0.96183 1.22995 1.04130 0.91357 1.03414 0.89918 0.92758 0.91971 0.95301 0.89467 0.84068 0.85133 0.75715 0.75043 0.81621 0.82418 0.85752 0.90466 0.85903 0.87980 0.87452 0.87777 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 6.98 71.98 0.50 -2.84 16 2 C 0.23 4.12 0.64 3.60 0.00 4.12 16 3 C 0.06 1.03 5.57 86.30 0.48 1.52 16 4 N -0.84 -13.26 8.81 -186.71 -1.64 -14.91 16 5 N -0.72 -14.65 4.29 -438.00 -1.88 -16.53 16 6 C 0.70 19.53 7.79 179.06 1.39 20.92 16 7 O -0.59 -18.92 9.69 -4.01 -0.04 -18.95 16 8 N -0.67 -20.66 5.31 -316.69 -1.68 -22.34 16 9 C 0.10 3.73 6.47 38.22 0.25 3.98 16 10 C -0.06 -2.13 8.73 22.37 0.20 -1.93 16 11 C -0.19 -6.22 10.02 22.33 0.22 -6.00 16 12 C 0.11 4.25 7.29 22.37 0.16 4.41 16 13 F -0.15 -5.59 17.26 44.97 0.78 -4.82 16 14 C -0.25 -11.24 9.10 22.42 0.20 -11.03 16 15 C 0.13 5.83 6.66 22.68 0.15 5.98 16 16 O -0.22 -10.78 7.98 -22.78 -0.18 -10.97 16 17 C -0.40 -22.19 9.89 67.92 0.67 -21.52 16 18 H 0.08 4.55 5.55 -2.91 -0.02 4.54 16 19 C 0.01 0.63 5.49 84.83 0.47 1.10 16 20 N -0.92 -53.02 13.96 21.61 0.30 -52.72 16 21 Si 0.97 41.05 28.62 68.60 1.96 43.02 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 25 C -0.15 -2.13 5.02 -10.79 -0.05 -2.19 16 26 C -0.17 -2.04 9.60 30.59 0.29 -1.75 16 27 C -0.18 -2.50 9.70 30.60 0.30 -2.21 16 28 H 0.08 1.30 6.88 -2.39 -0.02 1.28 16 29 H 0.05 1.10 7.03 -2.39 -0.02 1.08 16 30 H 0.06 1.62 5.88 -2.39 -0.01 1.61 16 31 H 0.03 0.67 6.47 -2.39 -0.02 0.65 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.35 4.68 9.08 -89.70 -0.81 3.86 16 34 H 0.34 5.79 8.30 -89.70 -0.74 5.04 16 35 H 0.41 7.05 8.41 -92.71 -0.78 6.27 16 36 H 0.41 11.99 8.34 -92.70 -0.77 11.22 16 37 H 0.17 5.22 5.71 -2.91 -0.02 5.20 16 38 H 0.16 4.16 8.06 -2.91 -0.02 4.14 16 39 H 0.12 6.08 5.73 -2.91 -0.02 6.07 16 40 H 0.29 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.12 1.85 7.52 -2.38 -0.02 1.83 16 42 H 0.10 1.25 5.86 -2.39 -0.01 1.24 16 43 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.09 1.37 7.48 -2.39 -0.02 1.36 16 Total: -1.00 -62.49 365.23 0.85 -61.64 By element: Atomic # 1 Polarization: 46.02 SS G_CDS: -2.00 Total: 44.02 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 5.24 Total: -7.43 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -4.90 Total: -106.50 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.22 Total: -29.92 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.78 Total: -4.82 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.96 Total: 43.02 kcal Total: -62.49 0.85 -61.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841144533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.646 kcal (2) G-P(sol) polarization free energy of solvation -62.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds