Wall clock time and date at job start Tue Mar 31 2020 19:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47057 * 2 1 4 4 N 1.46900 * 109.46713 * 299.99591 * 3 2 1 5 5 N 1.46500 * 109.47144 * 239.99496 * 2 1 3 6 6 C 1.34770 * 119.99940 * 175.34075 * 5 2 1 7 7 O 1.21593 * 120.00242 * 355.74741 * 6 5 2 8 8 N 1.34781 * 120.00137 * 175.75275 * 6 5 2 9 9 C 1.40130 * 119.99803 * 184.22292 * 8 6 5 10 10 C 1.38692 * 120.07998 * 333.51087 * 9 8 6 11 11 C 1.38200 * 120.02436 * 179.97438 * 10 9 8 12 12 C 1.38539 * 120.17278 * 0.02562 * 11 10 9 13 13 F 1.35103 * 119.92152 * 179.97438 * 12 11 10 14 14 C 1.38342 * 120.15667 * 0.04674 * 12 11 10 15 15 C 1.38740 * 119.97255 * 359.92830 * 14 12 11 16 16 O 1.35774 * 120.08621 * 180.32000 * 15 14 12 17 17 C 1.34809 * 117.00287 * 354.38887 * 16 15 14 18 18 H 1.08001 * 119.99465 * 5.08303 * 17 16 15 19 19 C 1.38631 * 120.00204 * 185.07703 * 17 16 15 20 20 N 1.31576 * 119.99831 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00119 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47393 * 89.99686 * 21 19 17 23 23 H 1.48509 * 109.47086 * 209.99764 * 21 19 17 24 24 H 1.48498 * 109.46884 * 329.99228 * 21 19 17 25 25 C 1.53000 * 109.46761 * 119.99813 * 2 1 3 26 26 C 1.52998 * 117.49868 * 122.39508 * 25 2 1 27 27 C 1.53004 * 117.50180 * 53.73536 * 25 2 1 28 28 H 1.09003 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47315 * 300.00494 * 1 2 3 30 30 H 1.09004 * 109.46664 * 60.00250 * 1 2 3 31 31 H 1.08999 * 109.47462 * 59.99595 * 3 2 1 32 32 H 1.09004 * 109.46984 * 179.97438 * 3 2 1 33 33 H 1.00900 * 110.99504 * 180.02562 * 4 3 2 34 34 H 1.00900 * 111.00378 * 303.95018 * 4 3 2 35 35 H 0.97002 * 119.99796 * 355.34414 * 5 2 1 36 36 H 0.96993 * 119.99602 * 4.21823 * 8 6 5 37 37 H 1.08004 * 119.98624 * 359.97438 * 10 9 8 38 38 H 1.08003 * 119.91042 * 180.02562 * 11 10 9 39 39 H 1.07993 * 120.01857 * 179.97438 * 14 12 11 40 40 H 0.97001 * 119.99856 * 180.02562 * 20 19 17 41 41 H 1.08998 * 115.55281 * 268.06130 * 25 2 1 42 42 H 1.08998 * 117.49804 * 359.97438 * 26 25 2 43 43 H 1.08999 * 117.49970 * 145.02214 * 26 25 2 44 44 H 1.08996 * 117.49969 * 214.98207 * 27 25 2 45 45 H 1.08999 * 117.49707 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5504 2.1349 -1.1995 5 7 2.0184 -0.6907 -1.1961 6 6 3.3398 -0.7324 -1.4579 7 8 4.1202 -0.1319 -0.7445 8 7 3.7963 -1.4396 -2.5105 9 6 5.1752 -1.5560 -2.7314 10 6 6.0383 -0.5725 -2.2717 11 6 7.3980 -0.6887 -2.4897 12 6 7.9032 -1.7862 -3.1676 13 9 9.2333 -1.8944 -3.3784 14 6 7.0488 -2.7708 -3.6306 15 6 5.6827 -2.6607 -3.4148 16 8 4.8427 -3.6289 -3.8625 17 6 5.3843 -4.6118 -4.6095 18 1 6.4534 -4.6500 -4.7584 19 6 4.5692 -5.5733 -5.1864 20 7 5.0979 -6.5322 -5.9160 21 14 2.7202 -5.5067 -4.9293 22 1 2.0998 -4.6922 -6.0049 23 1 2.1651 -6.8836 -4.9684 24 1 2.4258 -4.8916 -3.6102 25 6 2.0400 -0.7212 1.2493 26 6 2.9609 -1.9255 1.0433 27 6 1.5186 -2.1357 1.5108 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.8743 3.0902 -1.2230 34 1 1.8199 1.6414 -2.0373 35 1 1.3906 -1.1180 -1.7997 36 1 3.1704 -1.8680 -3.1151 37 1 5.6476 0.2846 -1.7432 38 1 8.0685 0.0781 -2.1306 39 1 7.4450 -3.6252 -4.1591 40 1 4.5275 -7.2048 -6.3200 41 1 2.2280 -0.0862 2.1150 42 1 3.2032 -2.2042 0.0178 43 1 3.7545 -2.0829 1.7737 44 1 1.3638 -2.4312 2.5485 45 1 0.8119 -2.5523 0.7930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841144534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:17 Heat of formation + Delta-G solvation = -45.777496 kcal Electronic energy + Delta-G solvation = -30371.018885 eV Core-core repulsion = 26111.808306 eV Total energy + Delta-G solvation = -4259.210579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.84748 -42.20322 -40.94681 -39.16985 -37.88934 -36.05955 -35.55784 -34.47490 -33.90777 -31.42915 -31.10594 -29.59978 -27.32013 -26.78117 -24.36088 -23.44353 -23.16264 -23.08847 -22.15807 -20.54637 -20.07174 -19.71520 -19.25803 -18.17814 -17.82372 -17.23912 -16.85764 -16.65323 -16.42965 -16.08735 -15.91665 -15.86400 -15.70225 -15.47190 -15.29153 -15.20275 -14.97805 -14.31723 -14.25492 -13.86978 -13.64494 -13.58125 -13.15671 -13.13653 -12.97817 -12.64407 -12.46042 -12.36884 -12.26492 -12.18247 -12.06992 -11.64836 -11.30592 -11.22050 -11.06573 -10.93369 -10.68932 -10.13669 -9.60743 -9.37601 -8.74793 -8.51905 -6.26053 0.19486 0.41107 1.32811 1.37333 1.51082 1.56059 2.08232 2.25928 2.65299 2.80750 2.87859 2.99467 3.16673 3.39143 3.54050 3.90238 3.94454 3.97607 4.04138 4.13808 4.25670 4.29179 4.33289 4.48026 4.57510 4.73835 4.78592 4.84091 4.92989 4.98113 5.05303 5.09509 5.14412 5.18785 5.23465 5.29622 5.32472 5.41967 5.48921 5.59773 5.70510 5.82691 5.95552 6.11112 6.22729 6.56626 6.79874 6.97787 7.40726 7.54911 8.59201 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.004481 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.019828 B = 6246.558308 C = 8089.404232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.227 3.773 3 C 0.049 3.951 4 N -0.841 5.841 5 N -0.725 5.725 6 C 0.709 3.291 7 O -0.587 6.587 8 N -0.670 5.670 9 C 0.100 3.900 10 C -0.063 4.063 11 C -0.192 4.192 12 C 0.111 3.889 13 F -0.149 7.149 14 C -0.256 4.256 15 C 0.133 3.867 16 O -0.221 6.221 17 C -0.401 4.401 18 H 0.077 0.923 19 C 0.012 3.988 20 N -0.921 5.921 21 Si 0.972 3.028 22 H -0.259 1.259 23 H -0.276 1.276 24 H -0.250 1.250 25 C -0.147 4.147 26 C -0.184 4.184 27 C -0.163 4.163 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.345 0.655 34 H 0.335 0.665 35 H 0.407 0.593 36 H 0.412 0.588 37 H 0.172 0.828 38 H 0.157 0.843 39 H 0.124 0.876 40 H 0.286 0.714 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.104 0.896 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.639 15.114 12.169 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.141 3.859 3 C -0.082 4.082 4 N -0.369 5.369 5 N -0.381 5.381 6 C 0.411 3.589 7 O -0.466 6.466 8 N -0.317 5.317 9 C 0.004 3.996 10 C -0.083 4.083 11 C -0.212 4.212 12 C 0.091 3.909 13 F -0.127 7.127 14 C -0.277 4.277 15 C 0.081 3.919 16 O -0.127 6.127 17 C -0.477 4.477 18 H 0.095 0.905 19 C -0.187 4.187 20 N -0.560 5.560 21 Si 0.793 3.207 22 H -0.184 1.184 23 H -0.201 1.201 24 H -0.173 1.173 25 C -0.166 4.166 26 C -0.222 4.222 27 C -0.199 4.199 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.242 0.758 36 H 0.248 0.752 37 H 0.189 0.811 38 H 0.175 0.825 39 H 0.142 0.858 40 H 0.095 0.905 41 H 0.132 0.868 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.976 15.289 13.055 23.401 hybrid contribution 1.081 -1.273 -1.328 2.134 sum -10.895 14.016 11.727 21.276 Atomic orbital electron populations 1.21885 0.90604 1.02632 1.04206 1.19807 0.94966 0.89926 0.81174 1.22199 0.98892 0.92861 0.94292 1.58804 1.67075 1.06563 1.04498 1.45321 1.04476 1.60110 1.28209 1.15832 0.83560 0.79655 0.79862 1.90768 1.55426 1.49203 1.51195 1.42335 1.05121 1.54994 1.29241 1.16825 0.83786 0.93551 1.05488 1.21259 0.91214 0.98020 0.97816 1.20984 0.96413 0.98838 1.04932 1.17538 0.76625 0.96431 1.00348 1.91425 1.31605 1.96324 1.93384 1.20944 0.93233 1.02702 1.10786 1.18783 0.88852 0.87917 0.96339 1.83453 1.35105 1.31793 1.62356 1.20626 0.94480 1.04181 1.28440 0.90530 1.25345 1.05287 0.93777 0.94309 1.69749 1.38821 1.14853 1.32609 0.85197 0.76945 0.78253 0.80274 1.18401 1.20074 1.17304 1.22650 1.03721 0.90693 0.99557 1.22831 0.94102 1.03994 1.01241 1.23043 0.95903 0.98315 1.02679 0.91778 0.89981 0.90676 0.89853 0.93905 0.84275 0.85366 0.75753 0.75214 0.81110 0.82538 0.85809 0.90476 0.86766 0.90980 0.90412 0.87739 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.20 71.98 0.59 -1.16 16 2 C 0.23 3.91 0.66 3.61 0.00 3.91 16 3 C 0.05 0.89 5.41 86.30 0.47 1.35 16 4 N -0.84 -13.46 8.86 -186.71 -1.65 -15.12 16 5 N -0.73 -14.18 3.80 -438.00 -1.66 -15.84 16 6 C 0.71 18.96 5.39 179.06 0.97 19.93 16 7 O -0.59 -17.84 9.55 -4.01 -0.04 -17.88 16 8 N -0.67 -20.39 5.28 -316.70 -1.67 -22.07 16 9 C 0.10 3.66 6.46 38.22 0.25 3.91 16 10 C -0.06 -2.10 8.78 22.37 0.20 -1.90 16 11 C -0.19 -6.36 10.02 22.33 0.22 -6.13 16 12 C 0.11 4.29 7.29 22.37 0.16 4.46 16 13 F -0.15 -5.66 17.26 44.97 0.78 -4.88 16 14 C -0.26 -11.39 9.14 22.41 0.20 -11.19 16 15 C 0.13 5.86 6.66 22.69 0.15 6.01 16 16 O -0.22 -10.72 8.02 -22.80 -0.18 -10.90 16 17 C -0.40 -22.21 9.95 67.91 0.68 -21.54 16 18 H 0.08 4.58 5.44 -2.91 -0.02 4.57 16 19 C 0.01 0.65 5.49 84.82 0.47 1.11 16 20 N -0.92 -52.94 13.96 21.61 0.30 -52.64 16 21 Si 0.97 40.98 28.62 68.60 1.96 42.94 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 25 C -0.15 -2.82 4.86 -10.79 -0.05 -2.87 16 26 C -0.18 -4.66 8.52 30.62 0.26 -4.40 16 27 C -0.16 -2.99 9.68 30.62 0.30 -2.69 16 28 H 0.06 0.76 6.93 -2.39 -0.02 0.74 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.00 7.60 -2.38 -0.02 0.98 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.03 5.71 -2.38 -0.01 1.01 16 33 H 0.34 4.86 9.08 -89.69 -0.81 4.05 16 34 H 0.33 5.89 8.26 -89.69 -0.74 5.15 16 35 H 0.41 6.54 8.50 -92.71 -0.79 5.75 16 36 H 0.41 11.77 8.40 -92.71 -0.78 10.99 16 37 H 0.17 5.38 5.58 -2.91 -0.02 5.36 16 38 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 39 H 0.12 6.08 5.64 -2.91 -0.02 6.06 16 40 H 0.29 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.11 2.04 8.06 -2.39 -0.02 2.02 16 42 H 0.07 2.19 5.13 -2.39 -0.01 2.18 16 43 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.10 1.69 7.21 -2.39 -0.02 1.67 16 Total: -1.00 -62.74 363.66 0.67 -62.07 By element: Atomic # 1 Polarization: 47.53 SS G_CDS: -2.02 Total: 45.51 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 4.86 Total: -11.19 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -4.69 Total: -105.67 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.22 Total: -28.78 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.78 Total: -4.88 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 1.96 Total: 42.94 kcal Total: -62.74 0.67 -62.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841144534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.292 kcal (2) G-P(sol) polarization free energy of solvation -62.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds