Wall clock time and date at job start Tue Mar 31 2020 19:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53009 * 109.46839 * 2 1 4 4 H 1.08999 * 109.47189 * 305.00368 * 3 2 1 5 5 C 1.50695 * 109.46732 * 185.00170 * 3 2 1 6 6 H 1.08005 * 119.99995 * 240.00069 * 5 3 2 7 7 C 1.37881 * 120.00286 * 60.00541 * 5 3 2 8 8 N 1.31514 * 119.99612 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00173 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47090 * 89.99765 * 9 7 5 11 11 H 1.48499 * 109.47189 * 209.99797 * 9 7 5 12 12 H 1.48500 * 109.46856 * 329.99952 * 9 7 5 13 13 N 1.46497 * 109.46561 * 65.00341 * 3 2 1 14 14 C 1.34777 * 120.00072 * 274.99368 * 13 3 2 15 15 O 1.21362 * 120.00244 * 0.02562 * 14 13 3 16 16 C 1.49323 * 119.99795 * 180.02562 * 14 13 3 17 17 O 1.21392 * 120.00334 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99795 * 179.97438 * 16 14 13 19 19 C 1.39884 * 120.00105 * 184.46579 * 18 16 14 20 20 C 1.38757 * 120.09150 * 325.34349 * 19 18 16 21 21 C 1.38375 * 119.97308 * 179.97438 * 20 19 18 22 22 F 1.35096 * 119.91616 * 179.97438 * 21 20 19 23 23 C 1.38495 * 120.15931 * 359.97438 * 21 20 19 24 24 C 1.38230 * 120.18878 * 359.74515 * 23 21 20 25 25 C 1.38691 * 120.01861 * 0.51032 * 24 23 21 26 26 N 1.39982 * 120.07987 * 179.76686 * 25 24 23 27 27 C 1.46895 * 110.99794 * 299.72453 * 26 25 24 28 28 C 1.46898 * 110.99584 * 63.67875 * 26 25 24 29 29 H 1.08995 * 109.47141 * 59.99489 * 1 2 3 30 30 H 1.08998 * 109.46564 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46693 * 299.99826 * 1 2 3 32 32 H 1.09000 * 109.46977 * 240.00548 * 2 1 3 33 33 H 1.08987 * 109.47475 * 119.99961 * 2 1 3 34 34 H 0.97000 * 119.99814 * 180.02562 * 8 7 5 35 35 H 0.97000 * 119.99869 * 95.00619 * 13 3 2 36 36 H 0.96998 * 120.00267 * 4.47190 * 18 16 14 37 37 H 1.08004 * 120.01587 * 359.94572 * 20 19 18 38 38 H 1.08001 * 119.90861 * 180.02562 * 23 21 20 39 39 H 1.07995 * 119.99495 * 180.27695 * 24 23 21 40 40 H 1.09002 * 109.47306 * 60.00100 * 27 26 25 41 41 H 1.09009 * 109.47061 * 179.97438 * 27 26 25 42 42 H 1.08999 * 109.47684 * 299.99442 * 27 26 25 43 43 H 1.09003 * 109.47555 * 60.00363 * 28 26 25 44 44 H 1.09004 * 109.46772 * 179.97438 * 28 26 25 45 45 H 1.08997 * 109.47441 * 299.99726 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8786 -1.2281 8 7 3.4062 0.3369 -2.1730 9 14 6.0049 0.8814 -1.3820 10 1 6.5549 -0.3501 -0.7604 11 1 6.3829 0.9226 -2.8174 12 1 6.5569 2.0739 -0.6902 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3401 2.6320 0.4339 16 6 0.0404 3.3322 2.6429 17 8 0.8160 3.3650 3.5762 18 7 -1.1767 3.8996 2.7579 19 6 -1.5124 4.6059 3.9178 20 6 -1.0276 4.1909 5.1499 21 6 -1.3608 4.8917 6.2956 22 9 -0.8885 4.4863 7.4946 23 6 -2.1771 6.0076 6.2160 24 6 -2.6591 6.4303 4.9913 25 6 -2.3344 5.7305 3.8388 26 7 -2.8257 6.1545 2.5985 27 6 -4.2946 6.1428 2.5824 28 6 -2.3060 7.4844 2.2533 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8292 -0.0615 -2.9496 35 1 2.2720 2.1231 1.9978 36 1 -1.8200 3.8181 2.0365 37 1 -0.3908 3.3209 5.2147 38 1 -2.4343 6.5518 7.1127 39 1 -3.2919 7.3035 4.9323 40 1 -4.6718 6.8124 3.3553 41 1 -4.6499 6.4769 1.6075 42 1 -4.6520 5.1307 2.7723 43 1 -1.2177 7.4477 2.2040 44 1 -2.7031 7.7895 1.2851 45 1 -2.6112 8.2026 3.0142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873823328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:47 Heat of formation + Delta-G solvation = -92.121043 kcal Electronic energy + Delta-G solvation = -29387.562361 eV Core-core repulsion = 25126.342175 eV Total energy + Delta-G solvation = -4261.220186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.96142 -42.23427 -40.89355 -39.62524 -37.36018 -37.18788 -35.94883 -34.31168 -32.82418 -31.39299 -30.39155 -29.16986 -28.48117 -26.48167 -25.51292 -24.92778 -23.60887 -22.28893 -21.85210 -21.20464 -20.16146 -19.13873 -18.27228 -17.87119 -17.63408 -17.48242 -17.17982 -16.80615 -16.66366 -16.51846 -15.98716 -15.84900 -15.57615 -15.20802 -15.06403 -14.95335 -14.61717 -14.33195 -13.95272 -13.87325 -13.53320 -13.44962 -13.20978 -13.08405 -13.03066 -12.91533 -12.73951 -12.68046 -12.60197 -12.38690 -12.13263 -12.11261 -11.60781 -11.55404 -11.10324 -10.65712 -10.54045 -9.88397 -9.84119 -9.54819 -9.30636 -8.18650 -6.35584 -0.22337 -0.00034 0.51389 1.28957 1.45224 1.46528 1.56664 2.11323 2.39026 2.44484 2.68093 2.76776 3.11126 3.23711 3.49615 3.71821 3.94848 4.11465 4.15632 4.31616 4.42424 4.48965 4.55306 4.62760 4.65137 4.66522 4.71568 4.88869 4.98520 5.01984 5.02861 5.05885 5.11874 5.17468 5.23171 5.36129 5.39396 5.56113 5.62500 5.67445 5.78852 5.89387 5.96781 6.11398 6.24278 6.53156 6.66666 6.77954 7.09860 7.36267 8.86506 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.015456 B = 0.002783 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.205303 B =10057.889348 C =10726.336101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.016 0.984 5 C -0.555 4.555 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.671 5.671 14 C 0.497 3.503 15 O -0.542 6.542 16 C 0.515 3.485 17 O -0.522 6.522 18 N -0.621 5.621 19 C 0.175 3.825 20 C -0.169 4.169 21 C 0.101 3.899 22 F -0.143 7.143 23 C -0.143 4.143 24 C -0.091 4.091 25 C 0.059 3.941 26 N -0.528 5.528 27 C 0.025 3.975 28 C 0.030 3.970 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.267 0.733 35 H 0.408 0.592 36 H 0.434 0.566 37 H 0.135 0.865 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.087 0.913 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.895 13.628 13.885 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.034 0.966 5 C -0.593 4.593 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.193 1.193 13 N -0.320 5.320 14 C 0.277 3.723 15 O -0.421 6.421 16 C 0.297 3.703 17 O -0.397 6.397 18 N -0.267 5.267 19 C 0.079 3.921 20 C -0.191 4.191 21 C 0.081 3.919 22 F -0.122 7.122 23 C -0.163 4.163 24 C -0.111 4.111 25 C -0.037 4.037 26 N -0.249 5.249 27 C -0.121 4.121 28 C -0.117 4.117 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.243 0.757 36 H 0.274 0.726 37 H 0.153 0.847 38 H 0.184 0.816 39 H 0.185 0.815 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.663 13.159 13.263 24.380 hybrid contribution 1.004 0.010 0.332 1.057 sum -14.659 13.169 13.594 23.940 Atomic orbital electron populations 1.21710 0.96527 0.99702 1.00436 1.21824 0.94182 0.98531 1.01690 1.18640 0.94048 0.89576 0.80260 0.96629 1.21521 0.91259 1.39578 1.06905 0.91483 1.25672 1.03147 0.94177 0.94865 1.70008 1.36975 1.37902 1.09785 0.85400 0.79256 0.78759 0.77274 1.19755 1.20848 1.19315 1.46239 1.14330 1.53078 1.18391 1.19898 0.83774 0.80817 0.87827 1.90739 1.51462 1.59569 1.40312 1.20422 0.82331 0.79298 0.88251 1.90734 1.51753 1.57350 1.39911 1.42904 1.14782 1.49983 1.19040 1.17450 0.97643 0.92098 0.84920 1.21140 1.04329 1.02960 0.90662 1.17615 0.98032 0.96357 0.79850 1.91492 1.87031 1.90355 1.43302 1.21310 0.98463 0.95949 1.00554 1.21543 0.99211 0.99969 0.90404 1.18730 1.00375 0.93770 0.90872 1.59490 1.10661 1.28854 1.25930 1.22569 0.83873 1.02568 1.03062 1.22480 1.00273 0.86822 1.02080 0.94475 0.93205 0.94156 0.90248 0.94218 0.92351 0.75708 0.72613 0.84708 0.81558 0.81464 0.93100 0.89561 0.91437 0.92901 0.89450 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.51 71.98 0.61 -4.78 16 2 C -0.12 -5.93 5.45 30.60 0.17 -5.76 16 3 C 0.28 13.96 2.24 44.25 0.10 14.06 16 4 H 0.02 0.92 7.58 -2.39 -0.02 0.90 16 5 C -0.55 -29.35 8.73 25.60 0.22 -29.13 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 1.18 5.29 84.66 0.45 1.63 16 8 N -0.91 -50.51 11.29 21.45 0.24 -50.27 16 9 Si 0.97 41.98 29.54 68.60 2.03 44.00 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 13 N -0.67 -28.85 5.01 -447.56 -2.24 -31.09 16 14 C 0.50 19.84 6.45 87.23 0.56 20.40 16 15 O -0.54 -23.39 13.62 -3.29 -0.04 -23.44 16 16 C 0.51 17.69 7.73 87.23 0.67 18.36 16 17 O -0.52 -19.22 13.89 -3.38 -0.05 -19.27 16 18 N -0.62 -17.63 5.15 -304.41 -1.57 -19.20 16 19 C 0.17 4.42 6.32 38.29 0.24 4.66 16 20 C -0.17 -4.51 8.67 22.43 0.19 -4.32 16 21 C 0.10 2.27 7.29 22.36 0.16 2.43 16 22 F -0.14 -3.47 17.26 44.97 0.78 -2.69 16 23 C -0.14 -2.20 10.02 22.33 0.22 -1.97 16 24 C -0.09 -1.26 8.57 22.38 0.19 -1.07 16 25 C 0.06 1.13 4.76 38.26 0.18 1.31 16 26 N -0.53 -8.97 4.47 -744.37 -3.33 -12.30 16 27 C 0.03 0.29 9.35 127.69 1.19 1.49 16 28 C 0.03 0.42 9.38 127.69 1.20 1.62 16 29 H 0.04 1.67 7.85 -2.39 -0.02 1.65 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.65 5.64 -2.39 -0.01 1.64 16 32 H 0.08 4.23 5.95 -2.39 -0.01 4.22 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 35 H 0.41 16.47 8.01 -92.71 -0.74 15.73 16 36 H 0.43 11.68 7.98 -92.71 -0.74 10.94 16 37 H 0.14 4.16 6.20 -2.91 -0.02 4.14 16 38 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.17 1.23 7.02 -2.91 -0.02 1.21 16 40 H 0.05 0.40 7.14 -2.39 -0.02 0.38 16 41 H 0.09 0.83 8.12 -2.38 -0.02 0.81 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 1.05 8.12 -2.39 -0.02 1.03 16 45 H 0.05 0.52 7.33 -2.39 -0.02 0.51 16 Total: -1.00 -63.10 373.95 1.76 -61.34 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: -0.43 Total: 33.98 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 6.38 Total: 18.93 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -6.90 Total: -112.86 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -0.09 Total: -42.71 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -63.10 1.76 -61.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873823328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.778 kcal (2) G-P(sol) polarization free energy of solvation -63.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds