Wall clock time and date at job start Tue Mar 31 2020 19:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47286 * 2 1 4 4 H 1.09000 * 109.47004 * 54.99743 * 3 2 1 5 5 C 1.50703 * 109.47062 * 175.00098 * 3 2 1 6 6 H 1.07993 * 119.99763 * 120.00031 * 5 3 2 7 7 C 1.37872 * 119.99619 * 299.99997 * 5 3 2 8 8 N 1.31518 * 119.99428 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00558 * 359.97438 * 7 5 3 10 10 H 1.48507 * 109.46922 * 89.99868 * 9 7 5 11 11 H 1.48502 * 109.47515 * 210.00221 * 9 7 5 12 12 H 1.48498 * 109.46988 * 330.00460 * 9 7 5 13 13 N 1.46498 * 109.47087 * 294.99956 * 3 2 1 14 14 C 1.34782 * 120.00024 * 85.00072 * 13 3 2 15 15 O 1.21364 * 119.99885 * 359.97438 * 14 13 3 16 16 C 1.49325 * 119.99994 * 180.02562 * 14 13 3 17 17 O 1.21391 * 119.99754 * 359.97438 * 16 14 13 18 18 N 1.34771 * 119.99653 * 179.97438 * 16 14 13 19 19 C 1.39885 * 119.99718 * 185.52494 * 18 16 14 20 20 C 1.38756 * 120.09369 * 24.83057 * 19 18 16 21 21 C 1.38370 * 119.97903 * 179.97438 * 20 19 18 22 22 F 1.35095 * 119.92161 * 179.97438 * 21 20 19 23 23 C 1.38503 * 120.15737 * 0.02562 * 21 20 19 24 24 C 1.38227 * 120.18217 * 359.73949 * 23 21 20 25 25 C 1.38693 * 120.02827 * 0.50993 * 24 23 21 26 26 N 1.39969 * 120.08444 * 179.76745 * 25 24 23 27 27 C 1.46901 * 110.99867 * 59.72384 * 26 25 24 28 28 C 1.46900 * 111.00017 * 295.77318 * 26 25 24 29 29 H 1.09000 * 109.46858 * 300.00333 * 1 2 3 30 30 H 1.09002 * 109.46710 * 59.99884 * 1 2 3 31 31 H 1.08997 * 109.46922 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47273 * 239.99926 * 2 1 3 33 33 H 1.09001 * 109.47226 * 120.00042 * 2 1 3 34 34 H 0.97000 * 119.99306 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00514 * 265.00266 * 13 3 2 36 36 H 0.96996 * 120.00890 * 5.53235 * 18 16 14 37 37 H 1.08005 * 120.01257 * 359.95159 * 20 19 18 38 38 H 1.07994 * 119.90745 * 179.97438 * 23 21 20 39 39 H 1.08000 * 119.98696 * 180.28009 * 24 23 21 40 40 H 1.09000 * 109.47142 * 60.00120 * 27 26 25 41 41 H 1.08998 * 109.47516 * 300.00372 * 27 26 25 42 42 H 1.08997 * 109.47304 * 179.97438 * 27 26 25 43 43 H 1.09005 * 109.47146 * 179.97438 * 28 26 25 44 44 H 1.08993 * 109.47059 * 299.99743 * 28 26 25 45 45 H 1.09006 * 109.46813 * 59.99928 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4540 0.8803 1.3362 9 14 3.0964 0.1100 2.5707 10 1 2.8744 -1.3261 2.2645 11 1 3.7941 0.2359 3.8755 12 1 1.7882 0.8094 2.6395 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3670 15 8 -0.3401 2.6320 -0.4338 16 6 0.0400 3.3316 -2.6431 17 8 0.8153 3.3636 -3.5766 18 7 -1.1775 3.8980 -2.7584 19 6 -1.5922 4.4205 -3.9879 20 6 -1.0449 3.9391 -5.1686 21 6 -1.4572 4.4572 -6.3836 22 9 -0.9232 3.9880 -7.5324 23 6 -2.4153 5.4565 -6.4247 24 6 -2.9684 5.9376 -5.2528 25 6 -2.5570 5.4274 -4.0305 26 7 -3.1128 5.9171 -2.8429 27 6 -4.5672 5.7119 -2.8184 28 6 -2.7778 7.3343 -2.6500 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8770 0.4825 2.1132 35 1 2.2720 2.1231 -1.9978 36 1 -1.7661 3.9436 -1.9888 37 1 -0.2970 3.1604 -5.1393 38 1 -2.7339 5.8583 -7.3751 39 1 -3.7186 6.7137 -5.2887 40 1 -4.7851 4.6465 -2.8930 41 1 -5.0222 6.2355 -3.6592 42 1 -4.9734 6.1009 -1.8848 43 1 -3.2224 7.6895 -1.7203 44 1 -1.6949 7.4485 -2.6022 45 1 -3.1681 7.9167 -3.4848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873823329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:51 Heat of formation + Delta-G solvation = -63.285541 kcal Electronic energy + Delta-G solvation = -29465.163560 eV Core-core repulsion = 25205.193776 eV Total energy + Delta-G solvation = -4259.969785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.05750 -41.17307 -39.82901 -38.43155 -36.57057 -35.74958 -34.82780 -32.44776 -31.60102 -30.51353 -29.57645 -27.94876 -27.78696 -25.23623 -24.81021 -23.07760 -22.45119 -21.51633 -20.62118 -19.77390 -18.95163 -18.01239 -17.17669 -16.92633 -16.46232 -16.24791 -15.98817 -15.72232 -15.49190 -15.27789 -15.26178 -14.59114 -14.46972 -14.25364 -14.03498 -13.59443 -13.43222 -13.28886 -13.06756 -12.87310 -12.49224 -12.34721 -12.15016 -12.05004 -12.03417 -11.99136 -11.88787 -11.24891 -11.17544 -10.92561 -10.73400 -10.68348 -10.00594 -9.62973 -9.33471 -9.24432 -9.04397 -8.89982 -8.83369 -8.36318 -8.28821 -6.25620 -4.29677 0.68995 0.84520 1.73154 2.47042 3.17866 3.19494 3.31705 3.34434 3.41575 3.55579 3.81735 4.13834 4.26016 4.44754 4.66303 4.77936 4.85549 4.92419 4.95808 5.06631 5.12381 5.15406 5.22161 5.44577 5.51610 5.57155 5.64058 5.85348 5.85870 5.91858 5.93215 6.05354 6.10840 6.44301 6.47648 6.52383 6.58710 6.68420 6.79445 6.88676 6.99014 7.11585 7.16976 7.36576 7.67442 7.99962 8.36014 8.49271 8.75101 9.32681 10.86240 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016720 B = 0.002882 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.285820 B = 9711.468032 C =10531.327751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.055 0.945 5 C -0.540 4.540 6 H 0.083 0.917 7 C 0.081 3.919 8 N -0.888 5.888 9 Si 0.883 3.117 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.259 1.259 13 N -0.660 5.660 14 C 0.498 3.502 15 O -0.526 6.526 16 C 0.506 3.494 17 O -0.500 6.500 18 N -0.633 5.633 19 C 0.208 3.792 20 C -0.167 4.167 21 C 0.122 3.878 22 F -0.135 7.135 23 C -0.167 4.167 24 C -0.098 4.098 25 C 0.042 3.958 26 N -0.509 5.509 27 C 0.025 3.975 28 C 0.029 3.971 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.269 0.731 35 H 0.408 0.592 36 H 0.433 0.567 37 H 0.164 0.836 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.072 0.928 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.200 10.089 -11.758 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.138 3.862 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.309 5.309 14 C 0.276 3.724 15 O -0.405 6.405 16 C 0.289 3.711 17 O -0.373 6.373 18 N -0.279 5.279 19 C 0.111 3.889 20 C -0.188 4.188 21 C 0.102 3.898 22 F -0.113 7.113 23 C -0.187 4.187 24 C -0.118 4.118 25 C -0.055 4.055 26 N -0.230 5.230 27 C -0.121 4.121 28 C -0.118 4.118 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.244 0.756 36 H 0.273 0.727 37 H 0.181 0.819 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -19.736 9.691 -11.157 24.656 hybrid contribution -0.622 -0.028 -0.148 0.640 sum -20.358 9.664 -11.306 25.212 Atomic orbital electron populations 1.21894 0.96880 0.99440 1.02073 1.22320 0.94401 0.99569 1.01644 1.19366 0.96218 0.88707 0.81865 0.92714 1.21005 0.88205 1.40329 1.08196 0.89862 1.24820 0.94902 0.95041 0.97604 1.69865 1.08686 1.44094 1.29784 0.86914 0.80931 0.80013 0.80961 1.20107 1.22022 1.18393 1.46104 1.13559 1.52532 1.18694 1.19552 0.84343 0.81368 0.87118 1.90755 1.51128 1.59320 1.39264 1.20955 0.81461 0.78928 0.89726 1.90727 1.50459 1.56005 1.40144 1.43152 1.17264 1.55648 1.11812 1.17288 0.94311 0.92266 0.85084 1.21350 1.04250 1.03829 0.89381 1.17445 0.95047 0.95690 0.81595 1.91517 1.84879 1.87441 1.47487 1.20956 0.99035 0.99042 0.99680 1.21175 0.99636 0.99597 0.91402 1.18488 1.00143 0.97316 0.89526 1.59501 1.12231 1.19065 1.32185 1.22512 0.85628 1.02534 1.01456 1.22471 1.02493 0.85688 1.01104 0.92621 0.93283 0.94574 0.91901 0.92308 0.92142 0.75613 0.72721 0.81908 0.84638 0.84913 0.90943 0.94926 0.90544 0.90552 0.90907 0.94939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.51 37.16 0.32 -2.43 16 2 C -0.14 -3.00 5.11 -26.73 -0.14 -3.14 16 3 C 0.24 5.51 1.83 -69.08 -0.13 5.38 16 4 H 0.06 1.35 6.63 -51.93 -0.34 1.00 16 5 C -0.54 -14.30 9.31 -34.44 -0.32 -14.62 16 6 H 0.08 2.35 7.98 -52.49 -0.42 1.94 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.12 16 8 N -0.89 -25.93 13.96 55.43 0.77 -25.15 16 9 Si 0.88 21.01 24.41 -169.99 -4.15 16.86 16 10 H -0.27 -6.33 6.83 56.52 0.39 -5.94 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.26 -6.02 6.53 56.52 0.37 -5.65 16 13 N -0.66 -13.06 5.01 -55.40 -0.28 -13.34 16 14 C 0.50 9.04 6.45 -11.64 -0.08 8.97 16 15 O -0.53 -10.23 13.62 5.48 0.07 -10.16 16 16 C 0.51 8.04 7.69 -11.65 -0.09 7.96 16 17 O -0.50 -8.58 13.64 5.46 0.07 -8.51 16 18 N -0.63 -8.45 5.25 -10.16 -0.05 -8.50 16 19 C 0.21 2.58 6.45 -83.51 -0.54 2.04 16 20 C -0.17 -2.16 8.69 -39.34 -0.34 -2.51 16 21 C 0.12 1.41 7.29 -39.43 -0.29 1.13 16 22 F -0.13 -1.66 17.26 2.25 0.04 -1.62 16 23 C -0.17 -1.52 10.02 -39.49 -0.40 -1.91 16 24 C -0.10 -0.82 8.57 -39.42 -0.34 -1.16 16 25 C 0.04 0.42 4.76 -83.50 -0.40 0.03 16 26 N -0.51 -4.52 4.33 -186.63 -0.81 -5.32 16 27 C 0.03 0.17 9.34 60.07 0.56 0.73 16 28 C 0.03 0.22 9.39 60.06 0.56 0.78 16 29 H 0.05 1.09 7.85 -51.93 -0.41 0.68 16 30 H 0.05 0.90 5.64 -51.93 -0.29 0.60 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.31 3.22 -51.93 -0.17 1.15 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.41 7.74 8.01 -40.82 -0.33 7.41 16 36 H 0.43 5.46 7.75 -40.82 -0.32 5.14 16 37 H 0.16 2.37 5.78 -52.48 -0.30 2.06 16 38 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.13 0.81 7.02 -52.49 -0.37 0.45 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.03 0.18 7.11 -51.93 -0.37 -0.19 16 42 H 0.08 0.43 8.12 -51.93 -0.42 0.01 16 43 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.03 0.20 7.36 -51.93 -0.38 -0.18 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -29.70 366.36 -6.35 -36.04 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -5.84 Total: 10.81 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -1.70 Total: 3.37 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.36 Total: -52.31 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.15 Total: -18.66 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.15 Total: 16.86 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.70 -6.35 -36.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873823329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.244 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds