Wall clock time and date at job start Tue Mar 31 2020 19:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47286 * 2 1 4 4 H 1.09000 * 109.47004 * 54.99743 * 3 2 1 5 5 C 1.50703 * 109.47062 * 175.00098 * 3 2 1 6 6 H 1.07993 * 119.99763 * 120.00031 * 5 3 2 7 7 C 1.37872 * 119.99619 * 299.99997 * 5 3 2 8 8 N 1.31518 * 119.99428 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00558 * 359.97438 * 7 5 3 10 10 H 1.48507 * 109.46922 * 89.99868 * 9 7 5 11 11 H 1.48502 * 109.47515 * 210.00221 * 9 7 5 12 12 H 1.48498 * 109.46988 * 330.00460 * 9 7 5 13 13 N 1.46498 * 109.47087 * 294.99956 * 3 2 1 14 14 C 1.34782 * 120.00024 * 85.00072 * 13 3 2 15 15 O 1.21364 * 119.99885 * 359.97438 * 14 13 3 16 16 C 1.49325 * 119.99994 * 180.02562 * 14 13 3 17 17 O 1.21391 * 119.99754 * 359.97438 * 16 14 13 18 18 N 1.34771 * 119.99653 * 179.97438 * 16 14 13 19 19 C 1.39885 * 119.99718 * 185.52494 * 18 16 14 20 20 C 1.38756 * 120.09369 * 24.83057 * 19 18 16 21 21 C 1.38370 * 119.97903 * 179.97438 * 20 19 18 22 22 F 1.35095 * 119.92161 * 179.97438 * 21 20 19 23 23 C 1.38503 * 120.15737 * 0.02562 * 21 20 19 24 24 C 1.38227 * 120.18217 * 359.73949 * 23 21 20 25 25 C 1.38693 * 120.02827 * 0.50993 * 24 23 21 26 26 N 1.39969 * 120.08444 * 179.76745 * 25 24 23 27 27 C 1.46901 * 110.99867 * 59.72384 * 26 25 24 28 28 C 1.46900 * 111.00017 * 295.77318 * 26 25 24 29 29 H 1.09000 * 109.46858 * 300.00333 * 1 2 3 30 30 H 1.09002 * 109.46710 * 59.99884 * 1 2 3 31 31 H 1.08997 * 109.46922 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47273 * 239.99926 * 2 1 3 33 33 H 1.09001 * 109.47226 * 120.00042 * 2 1 3 34 34 H 0.97000 * 119.99306 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00514 * 265.00266 * 13 3 2 36 36 H 0.96996 * 120.00890 * 5.53235 * 18 16 14 37 37 H 1.08005 * 120.01257 * 359.95159 * 20 19 18 38 38 H 1.07994 * 119.90745 * 179.97438 * 23 21 20 39 39 H 1.08000 * 119.98696 * 180.28009 * 24 23 21 40 40 H 1.09000 * 109.47142 * 60.00120 * 27 26 25 41 41 H 1.08998 * 109.47516 * 300.00372 * 27 26 25 42 42 H 1.08997 * 109.47304 * 179.97438 * 27 26 25 43 43 H 1.09005 * 109.47146 * 179.97438 * 28 26 25 44 44 H 1.08993 * 109.47059 * 299.99743 * 28 26 25 45 45 H 1.09006 * 109.46813 * 59.99928 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4540 0.8803 1.3362 9 14 3.0964 0.1100 2.5707 10 1 2.8744 -1.3261 2.2645 11 1 3.7941 0.2359 3.8755 12 1 1.7882 0.8094 2.6395 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3670 15 8 -0.3401 2.6320 -0.4338 16 6 0.0400 3.3316 -2.6431 17 8 0.8153 3.3636 -3.5766 18 7 -1.1775 3.8980 -2.7584 19 6 -1.5922 4.4205 -3.9879 20 6 -1.0449 3.9391 -5.1686 21 6 -1.4572 4.4572 -6.3836 22 9 -0.9232 3.9880 -7.5324 23 6 -2.4153 5.4565 -6.4247 24 6 -2.9684 5.9376 -5.2528 25 6 -2.5570 5.4274 -4.0305 26 7 -3.1128 5.9171 -2.8429 27 6 -4.5672 5.7119 -2.8184 28 6 -2.7778 7.3343 -2.6500 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8770 0.4825 2.1132 35 1 2.2720 2.1231 -1.9978 36 1 -1.7661 3.9436 -1.9888 37 1 -0.2970 3.1604 -5.1393 38 1 -2.7339 5.8583 -7.3751 39 1 -3.7186 6.7137 -5.2887 40 1 -4.7851 4.6465 -2.8930 41 1 -5.0222 6.2355 -3.6592 42 1 -4.9734 6.1009 -1.8848 43 1 -3.2224 7.6895 -1.7203 44 1 -1.6949 7.4485 -2.6022 45 1 -3.1681 7.9167 -3.4848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873823329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:50 Heat of formation + Delta-G solvation = -84.573087 kcal Electronic energy + Delta-G solvation = -29466.086658 eV Core-core repulsion = 25205.193776 eV Total energy + Delta-G solvation = -4260.892882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.96317 -42.31965 -40.96070 -39.72470 -37.41107 -37.30488 -35.99837 -34.42215 -33.26304 -31.40622 -30.40632 -29.60801 -28.47300 -26.55696 -25.52928 -24.64679 -23.73529 -22.32514 -22.09723 -21.32164 -20.23279 -19.18362 -18.56065 -17.96280 -17.64212 -17.55342 -17.36395 -16.80963 -16.68245 -16.60571 -16.04899 -15.87943 -15.65503 -15.24041 -15.11124 -15.10822 -14.83395 -14.31093 -14.09989 -13.95182 -13.81095 -13.69357 -13.51242 -13.15638 -13.05991 -12.97313 -12.79839 -12.72186 -12.59407 -12.46292 -12.26548 -11.86060 -11.68546 -11.37733 -11.29736 -10.88844 -10.65955 -10.00039 -9.86878 -9.56459 -9.25386 -8.38495 -6.46634 -0.26807 -0.00559 0.52027 1.20790 1.30007 1.37527 1.47107 2.03781 2.26357 2.46335 2.56585 2.76417 2.96608 3.20388 3.40318 3.70937 3.96068 4.12391 4.14864 4.20413 4.29598 4.31013 4.40540 4.43660 4.62631 4.64567 4.66796 4.76151 4.88066 4.98591 4.99051 5.03238 5.06179 5.07568 5.12332 5.15138 5.17963 5.27407 5.45615 5.49121 5.62645 5.82887 5.89139 6.09419 6.23305 6.47079 6.54983 6.68349 6.94855 7.21056 8.76890 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016720 B = 0.002882 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.285820 B = 9711.468032 C =10531.327751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.249 3.751 4 H 0.040 0.960 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.940 3.060 10 H -0.258 1.258 11 H -0.293 1.293 12 H -0.250 1.250 13 N -0.667 5.667 14 C 0.502 3.498 15 O -0.536 6.536 16 C 0.513 3.487 17 O -0.518 6.518 18 N -0.618 5.618 19 C 0.181 3.819 20 C -0.182 4.182 21 C 0.104 3.896 22 F -0.144 7.144 23 C -0.148 4.148 24 C -0.088 4.088 25 C 0.054 3.946 26 N -0.526 5.526 27 C 0.025 3.975 28 C 0.029 3.971 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.271 0.729 35 H 0.410 0.590 36 H 0.436 0.564 37 H 0.140 0.860 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.790 11.122 -12.224 28.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.145 3.855 4 H 0.058 0.942 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.171 4.171 8 N -0.572 5.572 9 Si 0.766 3.234 10 H -0.184 1.184 11 H -0.220 1.220 12 H -0.174 1.174 13 N -0.316 5.316 14 C 0.282 3.718 15 O -0.414 6.414 16 C 0.295 3.705 17 O -0.393 6.393 18 N -0.264 5.264 19 C 0.084 3.916 20 C -0.203 4.203 21 C 0.084 3.916 22 F -0.123 7.123 23 C -0.168 4.168 24 C -0.108 4.108 25 C -0.043 4.043 26 N -0.248 5.248 27 C -0.121 4.121 28 C -0.118 4.118 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.246 0.754 36 H 0.277 0.723 37 H 0.157 0.843 38 H 0.183 0.817 39 H 0.185 0.815 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.073 0.927 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.382 10.747 -11.651 28.248 hybrid contribution 0.435 -0.213 -0.103 0.495 sum -22.947 10.534 -11.754 27.851 Atomic orbital electron populations 1.21800 0.94710 1.01141 1.01775 1.22244 0.96289 0.97863 1.01473 1.19044 0.93626 0.90088 0.82720 0.94199 1.21234 0.90196 1.39297 1.07239 0.93063 1.25613 0.95872 0.95650 0.99955 1.69992 1.10544 1.45788 1.30889 0.85980 0.79526 0.80010 0.77869 1.18377 1.22050 1.17390 1.45938 1.14544 1.53295 1.17869 1.19837 0.83456 0.80638 0.87869 1.90738 1.51255 1.59473 1.39969 1.20373 0.82319 0.79384 0.88400 1.90737 1.51216 1.57113 1.40249 1.42949 1.16106 1.54747 1.12553 1.17451 0.96031 0.93990 0.84088 1.21226 1.04475 1.04041 0.90597 1.17633 0.96272 0.96898 0.80809 1.91492 1.85245 1.87762 1.47753 1.21296 0.97049 0.97140 1.01333 1.21527 0.99524 0.99554 0.90181 1.18631 0.98751 0.96018 0.90889 1.59489 1.13698 1.19973 1.31630 1.22573 0.84139 1.02551 1.02869 1.22500 1.01603 0.85079 1.02573 0.93298 0.93165 0.91880 0.91483 0.93046 0.91945 0.75366 0.72297 0.84274 0.81712 0.81473 0.91524 0.93176 0.89408 0.89296 0.92654 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 8.51 71.98 0.61 -4.29 16 2 C -0.14 -5.83 5.11 30.60 0.16 -5.68 16 3 C 0.25 11.48 1.83 44.25 0.08 11.56 16 4 H 0.04 1.97 6.63 -2.39 -0.02 1.96 16 5 C -0.54 -29.60 9.31 25.60 0.24 -29.36 16 6 H 0.05 3.05 7.98 -2.91 -0.02 3.03 16 7 C 0.03 1.63 5.45 84.65 0.46 2.09 16 8 N -0.93 -56.07 13.96 21.45 0.30 -55.77 16 9 Si 0.94 43.30 24.41 68.60 1.67 44.97 16 10 H -0.26 -11.16 6.83 99.48 0.68 -10.48 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 12 H -0.25 -11.04 6.53 99.48 0.65 -10.39 16 13 N -0.67 -26.95 5.01 -447.54 -2.24 -29.19 16 14 C 0.50 18.37 6.45 87.23 0.56 18.93 16 15 O -0.54 -20.57 13.62 -3.29 -0.04 -20.62 16 16 C 0.51 16.55 7.69 87.23 0.67 17.22 16 17 O -0.52 -18.41 13.64 -3.38 -0.05 -18.45 16 18 N -0.62 -16.35 5.25 -304.42 -1.60 -17.95 16 19 C 0.18 4.36 6.45 38.29 0.25 4.61 16 20 C -0.18 -4.76 8.69 22.43 0.19 -4.56 16 21 C 0.10 2.30 7.29 22.36 0.16 2.47 16 22 F -0.14 -3.50 17.26 44.97 0.78 -2.73 16 23 C -0.15 -2.23 10.02 22.33 0.22 -2.01 16 24 C -0.09 -1.15 8.57 22.38 0.19 -0.96 16 25 C 0.05 0.96 4.76 38.26 0.18 1.14 16 26 N -0.53 -7.96 4.33 -744.38 -3.22 -11.18 16 27 C 0.02 0.25 9.34 127.69 1.19 1.44 16 28 C 0.03 0.35 9.39 127.69 1.20 1.55 16 29 H 0.05 1.81 7.85 -2.39 -0.02 1.79 16 30 H 0.05 1.76 5.64 -2.39 -0.01 1.75 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.05 2.21 3.22 -2.39 -0.01 2.21 16 34 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.41 16.22 8.01 -92.71 -0.74 15.47 16 36 H 0.44 10.71 7.75 -92.71 -0.72 10.00 16 37 H 0.14 4.28 5.78 -2.91 -0.02 4.26 16 38 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.17 1.10 7.02 -2.91 -0.02 1.08 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.05 0.34 7.11 -2.39 -0.02 0.32 16 42 H 0.09 0.70 8.12 -2.39 -0.02 0.68 16 43 H 0.09 0.86 8.12 -2.38 -0.02 0.84 16 44 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.05 0.43 7.36 -2.38 -0.02 0.42 16 Total: -1.00 -65.92 366.36 1.49 -64.43 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.49 Total: 32.34 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 6.38 Total: 14.15 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -6.76 Total: -114.09 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.09 Total: -39.07 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.78 Total: -2.73 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.67 Total: 44.97 kcal Total: -65.92 1.49 -64.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873823329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.144 kcal (2) G-P(sol) polarization free energy of solvation -65.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds