Wall clock time and date at job start Tue Mar 31 2020 19:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47218 * 2 1 4 4 H 1.09003 * 109.46917 * 54.99895 * 3 2 1 5 5 C 1.50695 * 109.47290 * 174.99811 * 3 2 1 6 6 H 1.08002 * 119.99851 * 120.00408 * 5 3 2 7 7 C 1.37881 * 120.00014 * 300.00125 * 5 3 2 8 8 N 1.31513 * 120.00069 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99780 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47546 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47605 * 119.99948 * 9 7 5 12 12 H 1.48505 * 109.47002 * 239.99619 * 9 7 5 13 13 N 1.46500 * 109.46742 * 295.00172 * 3 2 1 14 14 C 1.34774 * 120.00310 * 84.99998 * 13 3 2 15 15 O 1.21368 * 119.99942 * 359.97438 * 14 13 3 16 16 C 1.49322 * 119.99893 * 179.97438 * 14 13 3 17 17 O 1.21386 * 120.00070 * 0.02562 * 16 14 13 18 18 N 1.34786 * 119.99657 * 179.97438 * 16 14 13 19 19 C 1.39879 * 119.99631 * 185.27492 * 18 16 14 20 20 C 1.38926 * 119.99399 * 213.38736 * 19 18 16 21 21 C 1.38072 * 120.03307 * 179.72584 * 20 19 18 22 22 C 1.38843 * 120.02637 * 0.51203 * 21 20 19 23 23 N 1.40001 * 120.00972 * 179.76739 * 22 21 20 24 24 C 1.46898 * 110.99918 * 59.72080 * 23 22 21 25 25 C 1.46904 * 110.99574 * 295.77203 * 23 22 21 26 26 C 1.39102 * 119.98558 * 359.49088 * 22 21 20 27 27 F 1.35103 * 120.01133 * 180.27382 * 26 22 21 28 28 C 1.38188 * 119.96597 * 0.25383 * 26 22 21 29 29 H 1.09001 * 109.46978 * 60.00200 * 1 2 3 30 30 H 1.09007 * 109.46813 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47109 * 299.99896 * 1 2 3 32 32 H 1.08998 * 109.47680 * 239.99625 * 2 1 3 33 33 H 1.09001 * 109.46978 * 119.99799 * 2 1 3 34 34 H 0.97003 * 120.00127 * 180.02562 * 8 7 5 35 35 H 0.97004 * 119.99510 * 264.99488 * 13 3 2 36 36 H 0.96992 * 119.99979 * 5.28202 * 18 16 14 37 37 H 1.07997 * 119.98341 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.99036 * 180.27432 * 21 20 19 39 39 H 1.09001 * 109.47312 * 60.00226 * 24 23 22 40 40 H 1.09011 * 109.47393 * 300.00391 * 24 23 22 41 41 H 1.09000 * 109.47261 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.46802 * 183.95090 * 25 23 22 43 43 H 1.08996 * 109.46980 * 303.94803 * 25 23 22 44 44 H 1.08995 * 109.47323 * 63.95393 * 25 23 22 45 45 H 1.07998 * 120.01098 * 179.97438 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4061 0.3375 2.1734 9 14 6.0048 0.8814 1.3819 10 1 6.5987 1.5463 0.1943 11 1 6.3990 1.6168 2.6103 12 1 6.4970 -0.5174 1.4631 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3402 2.6319 -0.4338 16 6 0.0403 3.3323 -2.6428 17 8 0.8155 3.3644 -3.5763 18 7 -1.1773 3.8988 -2.7581 19 6 -1.5895 4.4268 -3.9861 20 6 -2.4137 5.5446 -4.0199 21 6 -2.8165 6.0699 -5.2316 22 6 -2.4067 5.4750 -6.4173 23 7 -2.8192 6.0050 -7.6457 24 6 -2.3714 7.3960 -7.7959 25 6 -4.2764 5.9014 -7.8009 26 6 -1.5814 4.3557 -6.3846 27 9 -1.1778 3.7798 -7.5382 28 6 -1.1743 3.8336 -5.1717 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0603 2.9504 35 1 2.2719 2.1231 -1.9978 36 1 -1.7676 3.9404 -1.9896 37 1 -2.7357 6.0059 -3.0979 38 1 -3.4537 6.9415 -5.2571 39 1 -1.2832 7.4348 -7.7464 40 1 -2.7935 8.0022 -6.9942 41 1 -2.7057 7.7834 -8.7584 42 1 -4.5623 6.2556 -8.7913 43 1 -4.5810 4.8613 -7.6851 44 1 -4.7669 6.5104 -7.0417 45 1 -0.5339 2.9643 -5.1455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873823334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:41 Heat of formation + Delta-G solvation = -73.583691 kcal Electronic energy + Delta-G solvation = -28831.838760 eV Core-core repulsion = 24571.422414 eV Total energy + Delta-G solvation = -4260.416346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.87022 -40.98450 -39.73167 -38.47118 -36.96807 -35.45255 -34.27727 -32.46509 -31.06513 -30.89994 -29.39747 -27.96991 -27.34065 -25.57883 -24.00581 -23.18095 -22.86212 -21.43295 -20.41285 -19.56424 -18.86739 -18.02787 -17.10251 -16.82474 -16.33580 -16.12795 -15.88710 -15.62556 -15.37704 -15.10318 -14.94195 -14.71395 -14.41437 -14.31990 -13.99460 -13.45868 -13.41032 -12.97996 -12.86500 -12.79094 -12.54244 -12.25928 -12.14139 -12.07743 -11.84383 -11.65539 -11.37946 -11.24087 -11.00950 -10.91138 -10.50823 -10.39176 -10.30878 -9.74901 -9.22457 -9.17345 -9.03114 -8.93780 -8.61219 -8.36718 -8.09971 -6.21399 -4.31115 0.68274 0.92648 1.74310 2.49547 3.20451 3.21864 3.28970 3.32539 3.41952 3.62147 3.87975 4.16531 4.30005 4.46084 4.70371 4.78675 4.91171 4.93924 4.97804 5.09584 5.11382 5.11973 5.31327 5.43340 5.49059 5.51453 5.68621 5.85372 5.91386 6.09058 6.26999 6.31570 6.45593 6.46600 6.50391 6.87315 6.91001 6.97202 7.05640 7.09267 7.22088 7.42707 7.58766 7.71176 7.79218 8.03524 8.36474 8.55552 8.80361 9.35932 10.84011 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.023769 B = 0.002249 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.700974 B =12446.224857 C =12843.042791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.267 3.733 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.665 5.665 14 C 0.495 3.505 15 O -0.528 6.528 16 C 0.507 3.493 17 O -0.500 6.500 18 N -0.652 5.652 19 C 0.183 3.817 20 C -0.145 4.145 21 C -0.099 4.099 22 C 0.028 3.972 23 N -0.505 5.505 24 C 0.028 3.972 25 C 0.029 3.971 26 C 0.148 3.852 27 F -0.124 7.124 28 C -0.157 4.157 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.104 0.896 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.426 0.574 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.072 0.928 40 H 0.032 0.968 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.032 0.968 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.785 11.229 -15.191 23.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.314 5.314 14 C 0.273 3.727 15 O -0.407 6.407 16 C 0.290 3.710 17 O -0.372 6.372 18 N -0.299 5.299 19 C 0.087 3.913 20 C -0.167 4.167 21 C -0.120 4.120 22 C -0.068 4.068 23 N -0.226 5.226 24 C -0.119 4.119 25 C -0.118 4.118 26 C 0.127 3.873 27 F -0.102 7.102 28 C -0.178 4.178 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.265 0.735 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.450 10.761 -15.368 23.680 hybrid contribution 0.665 0.396 0.567 0.959 sum -13.785 11.157 -14.801 23.099 Atomic orbital electron populations 1.21857 0.98286 0.98482 1.00994 1.21971 0.92660 0.99348 1.02854 1.19047 0.94875 0.89422 0.79991 0.92679 1.21237 0.90255 1.39417 1.06605 0.91684 1.24875 0.98883 0.94569 0.95234 1.69889 1.35213 1.37450 1.09316 0.86350 0.84466 0.77871 0.78211 1.19611 1.20818 1.20780 1.46488 1.13264 1.52373 1.19294 1.19511 0.84620 0.81645 0.86905 1.90754 1.51070 1.59587 1.39240 1.21123 0.81324 0.78593 0.89951 1.90766 1.50362 1.55641 1.40478 1.43318 1.17577 1.57394 1.11638 1.17458 0.95980 0.92774 0.85040 1.20839 1.01693 0.95274 0.98857 1.21207 0.99567 0.99772 0.91412 1.18733 1.01408 0.96991 0.89664 1.59551 1.13788 1.20190 1.29079 1.22480 1.01674 0.86507 1.01261 1.22467 0.85507 1.02388 1.01438 1.17229 0.96034 0.92475 0.81539 1.91515 1.88489 1.83221 1.46982 1.21091 1.04104 1.02939 0.89675 0.94659 0.95419 0.92923 0.94607 0.87786 0.92462 0.76322 0.73488 0.84597 0.84921 0.90960 0.94925 0.90740 0.90728 0.91067 0.94980 0.83008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.57 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.42 2.24 -69.08 -0.15 6.27 16 4 H 0.06 1.50 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.07 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.77 11.29 55.43 0.63 -23.14 16 9 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.67 -13.60 5.01 -55.41 -0.28 -13.87 16 14 C 0.49 9.28 6.45 -11.65 -0.08 9.20 16 15 O -0.53 -10.68 13.62 5.48 0.07 -10.60 16 16 C 0.51 8.13 7.62 -11.64 -0.09 8.04 16 17 O -0.50 -8.78 14.16 5.47 0.08 -8.70 16 18 N -0.65 -8.30 5.33 -10.27 -0.05 -8.35 16 19 C 0.18 2.18 6.28 -83.68 -0.53 1.66 16 20 C -0.15 -1.35 9.96 -39.39 -0.39 -1.74 16 21 C -0.10 -0.87 8.62 -39.42 -0.34 -1.21 16 22 C 0.03 0.29 4.74 -83.58 -0.40 -0.10 16 23 N -0.51 -4.76 4.82 -186.71 -0.90 -5.66 16 24 C 0.03 0.20 9.34 60.06 0.56 0.76 16 25 C 0.03 0.20 9.33 60.07 0.56 0.76 16 26 C 0.15 1.88 7.31 -39.28 -0.29 1.59 16 27 F -0.12 -1.72 17.07 2.25 0.04 -1.68 16 28 C -0.16 -2.07 8.62 -39.34 -0.34 -2.41 16 29 H 0.03 0.70 5.64 -51.93 -0.29 0.41 16 30 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.40 7.75 8.01 -40.82 -0.33 7.42 16 36 H 0.43 4.65 8.29 -40.82 -0.34 4.31 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.13 0.86 7.04 -52.49 -0.37 0.49 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.03 0.20 7.11 -51.92 -0.37 -0.17 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 44 H 0.03 0.19 7.49 -51.93 -0.39 -0.20 16 45 H 0.15 2.22 6.41 -52.49 -0.34 1.88 16 LS Contribution 374.97 15.07 5.65 5.65 Total: -1.00 -29.04 374.97 -7.52 -36.56 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.03 Total: 9.88 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.70 Total: 4.71 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.61 Total: -51.03 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.15 Total: -19.30 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.04 -7.52 -36.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873823334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.024 kcal (2) G-P(sol) polarization free energy of solvation -29.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds