Wall clock time and date at job start Tue Mar 31 2020 19:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47218 * 2 1 4 4 H 1.09003 * 109.46917 * 54.99895 * 3 2 1 5 5 C 1.50695 * 109.47290 * 174.99811 * 3 2 1 6 6 H 1.08002 * 119.99851 * 120.00408 * 5 3 2 7 7 C 1.37881 * 120.00014 * 300.00125 * 5 3 2 8 8 N 1.31513 * 120.00069 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99780 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47546 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47605 * 119.99948 * 9 7 5 12 12 H 1.48505 * 109.47002 * 239.99619 * 9 7 5 13 13 N 1.46500 * 109.46742 * 295.00172 * 3 2 1 14 14 C 1.34774 * 120.00310 * 84.99998 * 13 3 2 15 15 O 1.21368 * 119.99942 * 359.97438 * 14 13 3 16 16 C 1.49322 * 119.99893 * 179.97438 * 14 13 3 17 17 O 1.21386 * 120.00070 * 0.02562 * 16 14 13 18 18 N 1.34786 * 119.99657 * 179.97438 * 16 14 13 19 19 C 1.39879 * 119.99631 * 185.27492 * 18 16 14 20 20 C 1.38926 * 119.99399 * 213.38736 * 19 18 16 21 21 C 1.38072 * 120.03307 * 179.72584 * 20 19 18 22 22 C 1.38843 * 120.02637 * 0.51203 * 21 20 19 23 23 N 1.40001 * 120.00972 * 179.76739 * 22 21 20 24 24 C 1.46898 * 110.99918 * 59.72080 * 23 22 21 25 25 C 1.46904 * 110.99574 * 295.77203 * 23 22 21 26 26 C 1.39102 * 119.98558 * 359.49088 * 22 21 20 27 27 F 1.35103 * 120.01133 * 180.27382 * 26 22 21 28 28 C 1.38188 * 119.96597 * 0.25383 * 26 22 21 29 29 H 1.09001 * 109.46978 * 60.00200 * 1 2 3 30 30 H 1.09007 * 109.46813 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47109 * 299.99896 * 1 2 3 32 32 H 1.08998 * 109.47680 * 239.99625 * 2 1 3 33 33 H 1.09001 * 109.46978 * 119.99799 * 2 1 3 34 34 H 0.97003 * 120.00127 * 180.02562 * 8 7 5 35 35 H 0.97004 * 119.99510 * 264.99488 * 13 3 2 36 36 H 0.96992 * 119.99979 * 5.28202 * 18 16 14 37 37 H 1.07997 * 119.98341 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.99036 * 180.27432 * 21 20 19 39 39 H 1.09001 * 109.47312 * 60.00226 * 24 23 22 40 40 H 1.09011 * 109.47393 * 300.00391 * 24 23 22 41 41 H 1.09000 * 109.47261 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.46802 * 183.95090 * 25 23 22 43 43 H 1.08996 * 109.46980 * 303.94803 * 25 23 22 44 44 H 1.08995 * 109.47323 * 63.95393 * 25 23 22 45 45 H 1.07998 * 120.01098 * 179.97438 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4061 0.3375 2.1734 9 14 6.0048 0.8814 1.3819 10 1 6.5987 1.5463 0.1943 11 1 6.3990 1.6168 2.6103 12 1 6.4970 -0.5174 1.4631 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3402 2.6319 -0.4338 16 6 0.0403 3.3323 -2.6428 17 8 0.8155 3.3644 -3.5763 18 7 -1.1773 3.8988 -2.7581 19 6 -1.5895 4.4268 -3.9861 20 6 -2.4137 5.5446 -4.0199 21 6 -2.8165 6.0699 -5.2316 22 6 -2.4067 5.4750 -6.4173 23 7 -2.8192 6.0050 -7.6457 24 6 -2.3714 7.3960 -7.7959 25 6 -4.2764 5.9014 -7.8009 26 6 -1.5814 4.3557 -6.3846 27 9 -1.1778 3.7798 -7.5382 28 6 -1.1743 3.8336 -5.1717 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0603 2.9504 35 1 2.2719 2.1231 -1.9978 36 1 -1.7676 3.9404 -1.9896 37 1 -2.7357 6.0059 -3.0979 38 1 -3.4537 6.9415 -5.2571 39 1 -1.2832 7.4348 -7.7464 40 1 -2.7935 8.0022 -6.9942 41 1 -2.7057 7.7834 -8.7584 42 1 -4.5623 6.2556 -8.7913 43 1 -4.5810 4.8613 -7.6851 44 1 -4.7669 6.5104 -7.0417 45 1 -0.5339 2.9643 -5.1455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873823334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:40 Heat of formation + Delta-G solvation = -93.168875 kcal Electronic energy + Delta-G solvation = -28832.688037 eV Core-core repulsion = 24571.422414 eV Total energy + Delta-G solvation = -4261.265623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.85917 -42.19432 -40.79472 -39.78003 -37.91764 -37.16261 -35.38116 -34.30748 -32.83651 -31.76072 -30.30928 -29.16479 -28.49885 -26.73602 -25.32870 -24.40175 -24.04701 -22.43333 -21.79438 -21.24182 -20.21500 -19.16903 -18.28877 -17.93987 -17.58862 -17.46763 -17.14790 -16.77459 -16.71179 -16.53070 -15.95077 -15.66176 -15.59775 -15.37363 -15.13531 -15.03614 -14.63235 -14.19768 -13.87818 -13.80456 -13.58902 -13.48558 -13.22848 -13.18272 -13.04423 -12.94910 -12.81528 -12.71158 -12.63783 -12.37333 -12.14413 -12.11667 -11.61052 -11.48796 -11.10420 -10.69235 -10.55632 -9.95475 -9.86052 -9.55390 -9.27166 -8.19709 -6.36298 -0.28095 0.07926 0.46608 1.23746 1.43353 1.46229 1.57197 2.08030 2.38012 2.46159 2.63514 2.78152 3.10324 3.24062 3.47546 3.69579 3.98803 4.04523 4.22474 4.27686 4.41168 4.48182 4.54478 4.62898 4.63447 4.66670 4.70676 4.87526 4.96352 4.99486 4.99873 5.01255 5.11896 5.14702 5.22093 5.34348 5.38238 5.55096 5.57611 5.66823 5.77842 5.89955 5.93664 6.10670 6.23479 6.49991 6.65942 6.75211 7.07845 7.35491 8.85600 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.023769 B = 0.002249 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.700974 B =12446.224857 C =12843.042791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.018 0.982 5 C -0.553 4.553 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.671 5.671 14 C 0.497 3.503 15 O -0.542 6.542 16 C 0.516 3.484 17 O -0.518 6.518 18 N -0.633 5.633 19 C 0.161 3.839 20 C -0.125 4.125 21 C -0.089 4.089 22 C 0.038 3.962 23 N -0.528 5.528 24 C 0.027 3.973 25 C 0.028 3.972 26 C 0.121 3.879 27 F -0.139 7.139 28 C -0.169 4.169 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.267 0.733 35 H 0.408 0.592 36 H 0.436 0.564 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.185 13.184 -16.052 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.036 0.964 5 C -0.591 4.591 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.320 5.320 14 C 0.277 3.723 15 O -0.421 6.421 16 C 0.299 3.701 17 O -0.393 6.393 18 N -0.281 5.281 19 C 0.067 3.933 20 C -0.146 4.146 21 C -0.110 4.110 22 C -0.058 4.058 23 N -0.250 5.250 24 C -0.119 4.119 25 C -0.118 4.118 26 C 0.100 3.900 27 F -0.118 7.118 28 C -0.191 4.191 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.243 0.757 36 H 0.277 0.723 37 H 0.186 0.814 38 H 0.185 0.815 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.898 12.744 -16.255 26.065 hybrid contribution 0.977 -0.130 0.761 1.246 sum -14.921 12.614 -15.494 24.936 Atomic orbital electron populations 1.21710 0.96465 0.99708 1.00472 1.21829 0.94239 0.98569 1.01685 1.18654 0.94071 0.89589 0.80289 0.96448 1.21541 0.91263 1.39426 1.06841 0.91479 1.25664 1.03087 0.94212 0.94937 1.70009 1.36885 1.38013 1.09754 0.85360 0.79350 0.77888 0.78135 1.19042 1.20676 1.20360 1.46258 1.14326 1.53061 1.18386 1.19903 0.83718 0.80928 0.87793 1.90740 1.51320 1.59873 1.40207 1.20408 0.82390 0.79026 0.88323 1.90773 1.51257 1.56759 1.40510 1.43090 1.16301 1.56182 1.12493 1.17591 0.97634 0.94234 0.83837 1.21175 0.99401 0.93483 1.00496 1.21552 0.99023 1.00186 0.90209 1.18917 0.99938 0.95835 0.91094 1.59539 1.15363 1.21514 1.28576 1.22532 1.00987 0.85574 1.02850 1.22521 0.84045 1.02284 1.02918 1.17482 0.97725 0.93923 0.80895 1.91466 1.88930 1.83709 1.47673 1.20980 1.04497 1.02832 0.90766 0.94099 0.93292 0.94375 0.94273 0.90267 0.92358 0.75674 0.72324 0.81421 0.81494 0.92300 0.93193 0.89198 0.89353 0.92026 0.93185 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 8.51 71.98 0.61 -4.65 16 2 C -0.12 -5.87 5.45 30.59 0.17 -5.71 16 3 C 0.28 13.63 2.24 44.24 0.10 13.73 16 4 H 0.02 1.00 7.58 -2.39 -0.02 0.98 16 5 C -0.55 -28.82 8.73 25.60 0.22 -28.60 16 6 H 0.07 3.39 7.74 -2.91 -0.02 3.36 16 7 C 0.02 1.15 5.29 84.66 0.45 1.60 16 8 N -0.91 -49.97 11.29 21.45 0.24 -49.73 16 9 Si 0.97 41.65 29.54 68.60 2.03 43.68 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 13 N -0.67 -27.96 5.01 -447.56 -2.24 -30.21 16 14 C 0.50 18.79 6.45 87.23 0.56 19.35 16 15 O -0.54 -22.05 13.62 -3.30 -0.04 -22.10 16 16 C 0.52 16.51 7.62 87.23 0.66 17.17 16 17 O -0.52 -18.45 14.16 -3.36 -0.05 -18.50 16 18 N -0.63 -15.41 5.33 -304.73 -1.62 -17.04 16 19 C 0.16 3.63 6.28 38.19 0.24 3.87 16 20 C -0.12 -1.89 9.96 22.40 0.22 -1.67 16 21 C -0.09 -1.23 8.62 22.38 0.19 -1.04 16 22 C 0.04 0.72 4.74 38.19 0.18 0.91 16 23 N -0.53 -8.80 4.82 -744.62 -3.59 -12.39 16 24 C 0.03 0.32 9.34 127.69 1.19 1.51 16 25 C 0.03 0.32 9.33 127.69 1.19 1.51 16 26 C 0.12 3.05 7.31 22.47 0.16 3.22 16 27 F -0.14 -4.01 17.07 44.97 0.77 -3.24 16 28 C -0.17 -4.51 8.62 22.42 0.19 -4.31 16 29 H 0.04 1.63 5.64 -2.39 -0.01 1.62 16 30 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.04 1.67 7.85 -2.39 -0.02 1.65 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 4.17 5.95 -2.39 -0.01 4.16 16 34 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 35 H 0.41 16.03 8.01 -92.71 -0.74 15.29 16 36 H 0.44 8.78 8.29 -92.71 -0.77 8.01 16 37 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.17 1.22 7.04 -2.91 -0.02 1.20 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 0.42 7.11 -2.38 -0.02 0.40 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 0.81 8.12 -2.39 -0.02 0.79 16 44 H 0.05 0.39 7.49 -2.39 -0.02 0.37 16 45 H 0.13 3.97 6.41 -2.91 -0.02 3.96 16 Total: -1.00 -64.46 374.97 1.38 -63.08 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -0.46 Total: 29.56 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 6.36 Total: 16.88 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -7.22 Total: -109.37 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -0.09 Total: -40.59 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.77 Total: -3.24 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -64.46 1.38 -63.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873823334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.091 kcal (2) G-P(sol) polarization free energy of solvation -64.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds