Wall clock time and date at job start Tue Mar 31 2020 19:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46966 * 2 1 4 4 H 1.09004 * 109.46669 * 304.99750 * 3 2 1 5 5 C 1.50701 * 109.47248 * 185.00295 * 3 2 1 6 6 H 1.07998 * 119.99508 * 240.00092 * 5 3 2 7 7 C 1.37872 * 119.99992 * 59.99500 * 5 3 2 8 8 N 1.31510 * 120.00151 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99605 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47005 * 60.00364 * 9 7 5 11 11 H 1.48500 * 109.46778 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47031 * 300.00018 * 9 7 5 13 13 N 1.46498 * 109.47150 * 64.99666 * 3 2 1 14 14 C 1.34775 * 120.00295 * 275.00171 * 13 3 2 15 15 O 1.21364 * 119.99939 * 359.97438 * 14 13 3 16 16 C 1.49324 * 119.99938 * 180.02562 * 14 13 3 17 17 O 1.21387 * 120.00277 * 359.97438 * 16 14 13 18 18 N 1.34774 * 119.99584 * 180.02562 * 16 14 13 19 19 C 1.39885 * 119.99802 * 185.27442 * 18 16 14 20 20 C 1.38929 * 119.99583 * 213.34865 * 19 18 16 21 21 C 1.38076 * 120.03228 * 179.77145 * 20 19 18 22 22 C 1.38845 * 120.02378 * 0.50468 * 21 20 19 23 23 N 1.40005 * 120.00064 * 179.77261 * 22 21 20 24 24 C 1.46898 * 111.00176 * 59.72589 * 23 22 21 25 25 C 1.46895 * 110.99866 * 295.76730 * 23 22 21 26 26 C 1.39093 * 119.98981 * 359.49502 * 22 21 20 27 27 F 1.35104 * 120.01655 * 180.27257 * 26 22 21 28 28 C 1.38195 * 119.96491 * 0.25428 * 26 22 21 29 29 H 1.08999 * 109.47582 * 299.99956 * 1 2 3 30 30 H 1.09004 * 109.47343 * 60.00689 * 1 2 3 31 31 H 1.09006 * 109.46644 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47582 * 240.00044 * 2 1 3 33 33 H 1.09001 * 109.47241 * 119.99842 * 2 1 3 34 34 H 0.97001 * 119.99628 * 180.02562 * 8 7 5 35 35 H 0.96998 * 119.99439 * 95.00568 * 13 3 2 36 36 H 0.96996 * 120.00793 * 5.27322 * 18 16 14 37 37 H 1.07996 * 119.97971 * 0.02562 * 20 19 18 38 38 H 1.08000 * 119.98803 * 180.28086 * 21 20 19 39 39 H 1.09004 * 109.47343 * 59.99589 * 24 23 22 40 40 H 1.09004 * 109.46923 * 299.99963 * 24 23 22 41 41 H 1.08991 * 109.47237 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.47080 * 183.95351 * 25 23 22 43 43 H 1.08996 * 109.47606 * 303.95961 * 25 23 22 44 44 H 1.09002 * 109.46835 * 63.96204 * 25 23 22 45 45 H 1.08004 * 120.00826 * 179.97438 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0050 0.8802 -1.3811 10 1 6.5966 0.1455 -0.2343 11 1 6.3978 0.2169 -2.6504 12 1 6.5003 2.2801 -1.3808 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3399 2.6326 0.4334 16 6 0.0402 3.3325 2.6426 17 8 0.8154 3.3647 3.5762 18 7 -1.1774 3.8989 2.7579 19 6 -1.5071 4.6197 3.9105 20 6 -2.8133 4.6132 4.3837 21 6 -3.1387 5.3206 5.5240 22 6 -2.1629 6.0476 6.1927 23 7 -2.4943 6.7685 7.3462 24 6 -3.0238 5.8794 8.3888 25 6 -3.4457 7.8448 7.0390 26 6 -0.8548 6.0547 5.7198 27 9 0.0963 6.7574 6.3731 28 6 -0.5286 5.3424 4.5814 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0610 -2.9498 35 1 2.2718 2.1232 1.9977 36 1 -1.8250 3.8068 2.0417 37 1 -3.5736 4.0513 3.8618 38 1 -4.1533 5.3114 5.8939 39 1 -2.2718 5.1337 8.6467 40 1 -3.9194 5.3796 8.0196 41 1 -3.2727 6.4650 9.2737 42 1 -3.6322 8.4324 7.9379 43 1 -3.0288 8.4882 6.2643 44 1 -4.3823 7.4122 6.6870 45 1 0.4868 5.3478 4.2133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873823335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:44 Heat of formation + Delta-G solvation = -73.490871 kcal Electronic energy + Delta-G solvation = -28819.917999 eV Core-core repulsion = 24559.505678 eV Total energy + Delta-G solvation = -4260.412321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.86604 -40.98378 -39.73130 -38.47119 -36.96728 -35.45191 -34.27680 -32.46319 -31.06517 -30.89987 -29.39782 -27.97026 -27.33889 -25.57761 -24.00418 -23.17983 -22.86111 -21.43241 -20.41287 -19.56464 -18.86687 -18.02826 -17.09904 -16.83799 -16.32321 -16.11151 -15.88499 -15.57509 -15.41660 -15.12059 -14.93788 -14.71477 -14.40826 -14.33751 -13.99405 -13.52783 -13.29910 -13.00139 -12.86334 -12.78319 -12.55259 -12.25498 -12.15086 -12.07714 -11.84190 -11.64149 -11.36905 -11.25095 -11.02999 -10.88492 -10.50932 -10.40900 -10.30930 -9.75146 -9.22634 -9.18644 -9.03001 -8.93659 -8.60306 -8.36583 -8.09958 -6.20734 -4.30722 0.68376 0.92757 1.74395 2.49591 3.21902 3.23556 3.28456 3.30689 3.42016 3.62260 3.87932 4.16755 4.30366 4.46120 4.70390 4.78686 4.91161 4.93998 4.97927 5.09764 5.11716 5.12044 5.31434 5.43557 5.49302 5.51358 5.68657 5.85561 5.91411 6.09155 6.26394 6.30960 6.45709 6.46811 6.49883 6.87267 6.90701 6.97272 7.05313 7.09282 7.21832 7.42587 7.58601 7.71246 7.79331 8.03648 8.36623 8.55526 8.80270 9.36258 10.84579 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.022930 B = 0.002296 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.817094 B =12191.653032 C =13019.971271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.666 5.666 14 C 0.495 3.505 15 O -0.528 6.528 16 C 0.507 3.493 17 O -0.500 6.500 18 N -0.652 5.652 19 C 0.183 3.817 20 C -0.145 4.145 21 C -0.099 4.099 22 C 0.028 3.972 23 N -0.505 5.505 24 C 0.028 3.972 25 C 0.029 3.971 26 C 0.148 3.852 27 F -0.124 7.124 28 C -0.156 4.156 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.104 0.896 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.402 0.598 36 H 0.426 0.574 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.032 0.968 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 10.023 15.632 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.314 5.314 14 C 0.273 3.727 15 O -0.406 6.406 16 C 0.290 3.710 17 O -0.373 6.373 18 N -0.299 5.299 19 C 0.087 3.913 20 C -0.167 4.167 21 C -0.120 4.120 22 C -0.068 4.068 23 N -0.226 5.226 24 C -0.119 4.119 25 C -0.118 4.118 26 C 0.127 3.873 27 F -0.102 7.102 28 C -0.178 4.178 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.122 0.878 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.237 0.763 36 H 0.265 0.735 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.713 10.119 15.578 23.696 hybrid contribution 0.350 -0.348 -0.249 0.552 sum -14.363 9.771 15.329 23.168 Atomic orbital electron populations 1.21857 0.98312 0.98465 1.00984 1.21971 0.92644 0.99363 1.02848 1.19036 0.94840 0.89397 0.80001 0.92679 1.21160 0.90256 1.39625 1.06630 0.91789 1.24867 0.98868 0.94551 0.95210 1.69868 1.35394 1.37291 1.09330 0.86459 0.84454 0.78450 0.77509 1.20029 1.21080 1.20079 1.46486 1.13364 1.52265 1.19311 1.19511 0.84651 0.81609 0.86906 1.90752 1.51198 1.59346 1.39350 1.21121 0.81570 0.78730 0.89570 1.90766 1.50517 1.56342 1.39630 1.43317 1.16714 1.50960 1.18932 1.17459 0.93239 0.92296 0.88267 1.20837 0.95349 1.02785 0.97701 1.21206 0.99258 0.96566 0.94935 1.18731 0.92373 1.00837 0.94853 1.59544 1.44028 1.12149 1.06894 1.22477 0.98819 0.96412 0.94206 1.22465 0.93348 0.93789 1.02194 1.17230 0.84777 0.93587 0.91674 1.91517 1.62665 1.76085 1.79930 1.21100 1.01991 0.98283 0.96424 0.94680 0.92907 0.95429 0.87779 0.94618 0.92349 0.76328 0.73491 0.84610 0.84925 0.90973 0.94925 0.90740 0.90729 0.91059 0.94985 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.51 37.16 0.32 -2.56 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.44 2.24 -69.08 -0.15 6.29 16 4 H 0.06 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.82 8.73 -34.44 -0.30 -14.12 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.78 11.29 55.43 0.63 -23.16 16 9 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 13 N -0.67 -13.60 5.01 -55.40 -0.28 -13.88 16 14 C 0.49 9.28 6.45 -11.65 -0.08 9.21 16 15 O -0.53 -10.68 13.62 5.49 0.07 -10.61 16 16 C 0.51 8.13 7.62 -11.65 -0.09 8.04 16 17 O -0.50 -8.77 14.16 5.46 0.08 -8.70 16 18 N -0.65 -8.30 5.33 -10.27 -0.05 -8.36 16 19 C 0.18 2.18 6.28 -83.67 -0.53 1.66 16 20 C -0.15 -1.35 9.96 -39.39 -0.39 -1.74 16 21 C -0.10 -0.86 8.61 -39.42 -0.34 -1.20 16 22 C 0.03 0.29 4.74 -83.58 -0.40 -0.10 16 23 N -0.51 -4.76 4.82 -186.72 -0.90 -5.67 16 24 C 0.03 0.20 9.34 60.06 0.56 0.76 16 25 C 0.03 0.20 9.33 60.06 0.56 0.76 16 26 C 0.15 1.89 7.31 -39.28 -0.29 1.60 16 27 F -0.12 -1.73 17.07 2.25 0.04 -1.69 16 28 C -0.16 -2.08 8.62 -39.34 -0.34 -2.41 16 29 H 0.03 0.70 5.65 -51.93 -0.29 0.40 16 30 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.40 7.75 8.01 -40.82 -0.33 7.42 16 36 H 0.43 4.65 8.30 -40.82 -0.34 4.31 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 0.85 7.04 -52.49 -0.37 0.48 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.03 0.20 7.11 -51.93 -0.37 -0.17 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 44 H 0.03 0.19 7.49 -51.93 -0.39 -0.20 16 45 H 0.15 2.24 6.41 -52.48 -0.34 1.90 16 LS Contribution 374.98 15.07 5.65 5.65 Total: -1.00 -29.00 374.98 -7.52 -36.52 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.03 Total: 9.93 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -1.70 Total: 4.73 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.61 Total: -51.06 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.15 Total: -19.30 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.00 -7.52 -36.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873823335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.970 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds