Wall clock time and date at job start Tue Mar 31 2020 19:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46966 * 2 1 4 4 H 1.09004 * 109.46669 * 304.99750 * 3 2 1 5 5 C 1.50701 * 109.47248 * 185.00295 * 3 2 1 6 6 H 1.07998 * 119.99508 * 240.00092 * 5 3 2 7 7 C 1.37872 * 119.99992 * 59.99500 * 5 3 2 8 8 N 1.31510 * 120.00151 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99605 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47005 * 60.00364 * 9 7 5 11 11 H 1.48500 * 109.46778 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47031 * 300.00018 * 9 7 5 13 13 N 1.46498 * 109.47150 * 64.99666 * 3 2 1 14 14 C 1.34775 * 120.00295 * 275.00171 * 13 3 2 15 15 O 1.21364 * 119.99939 * 359.97438 * 14 13 3 16 16 C 1.49324 * 119.99938 * 180.02562 * 14 13 3 17 17 O 1.21387 * 120.00277 * 359.97438 * 16 14 13 18 18 N 1.34774 * 119.99584 * 180.02562 * 16 14 13 19 19 C 1.39885 * 119.99802 * 185.27442 * 18 16 14 20 20 C 1.38929 * 119.99583 * 213.34865 * 19 18 16 21 21 C 1.38076 * 120.03228 * 179.77145 * 20 19 18 22 22 C 1.38845 * 120.02378 * 0.50468 * 21 20 19 23 23 N 1.40005 * 120.00064 * 179.77261 * 22 21 20 24 24 C 1.46898 * 111.00176 * 59.72589 * 23 22 21 25 25 C 1.46895 * 110.99866 * 295.76730 * 23 22 21 26 26 C 1.39093 * 119.98981 * 359.49502 * 22 21 20 27 27 F 1.35104 * 120.01655 * 180.27257 * 26 22 21 28 28 C 1.38195 * 119.96491 * 0.25428 * 26 22 21 29 29 H 1.08999 * 109.47582 * 299.99956 * 1 2 3 30 30 H 1.09004 * 109.47343 * 60.00689 * 1 2 3 31 31 H 1.09006 * 109.46644 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47582 * 240.00044 * 2 1 3 33 33 H 1.09001 * 109.47241 * 119.99842 * 2 1 3 34 34 H 0.97001 * 119.99628 * 180.02562 * 8 7 5 35 35 H 0.96998 * 119.99439 * 95.00568 * 13 3 2 36 36 H 0.96996 * 120.00793 * 5.27322 * 18 16 14 37 37 H 1.07996 * 119.97971 * 0.02562 * 20 19 18 38 38 H 1.08000 * 119.98803 * 180.28086 * 21 20 19 39 39 H 1.09004 * 109.47343 * 59.99589 * 24 23 22 40 40 H 1.09004 * 109.46923 * 299.99963 * 24 23 22 41 41 H 1.08991 * 109.47237 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.47080 * 183.95351 * 25 23 22 43 43 H 1.08996 * 109.47606 * 303.95961 * 25 23 22 44 44 H 1.09002 * 109.46835 * 63.96204 * 25 23 22 45 45 H 1.08004 * 120.00826 * 179.97438 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0050 0.8802 -1.3811 10 1 6.5966 0.1455 -0.2343 11 1 6.3978 0.2169 -2.6504 12 1 6.5003 2.2801 -1.3808 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3399 2.6326 0.4334 16 6 0.0402 3.3325 2.6426 17 8 0.8154 3.3647 3.5762 18 7 -1.1774 3.8989 2.7579 19 6 -1.5071 4.6197 3.9105 20 6 -2.8133 4.6132 4.3837 21 6 -3.1387 5.3206 5.5240 22 6 -2.1629 6.0476 6.1927 23 7 -2.4943 6.7685 7.3462 24 6 -3.0238 5.8794 8.3888 25 6 -3.4457 7.8448 7.0390 26 6 -0.8548 6.0547 5.7198 27 9 0.0963 6.7574 6.3731 28 6 -0.5286 5.3424 4.5814 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0610 -2.9498 35 1 2.2718 2.1232 1.9977 36 1 -1.8250 3.8068 2.0417 37 1 -3.5736 4.0513 3.8618 38 1 -4.1533 5.3114 5.8939 39 1 -2.2718 5.1337 8.6467 40 1 -3.9194 5.3796 8.0196 41 1 -3.2727 6.4650 9.2737 42 1 -3.6322 8.4324 7.9379 43 1 -3.0288 8.4882 6.2643 44 1 -4.3823 7.4122 6.6870 45 1 0.4868 5.3478 4.2133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873823335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:44 Heat of formation + Delta-G solvation = -93.083196 kcal Electronic energy + Delta-G solvation = -28820.767586 eV Core-core repulsion = 24559.505678 eV Total energy + Delta-G solvation = -4261.261908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.86080 -42.19437 -40.79503 -39.78000 -37.91759 -37.16090 -35.38139 -34.30764 -32.82993 -31.76074 -30.31052 -29.15992 -28.49890 -26.73538 -25.32628 -24.39713 -24.04757 -22.43201 -21.79172 -21.24158 -20.21524 -19.17355 -18.29524 -17.90014 -17.59327 -17.53439 -16.96731 -16.87335 -16.74750 -16.53021 -15.97836 -15.66034 -15.58008 -15.37530 -15.18477 -14.97014 -14.61933 -14.16257 -13.96230 -13.75942 -13.58246 -13.48375 -13.21440 -13.18387 -13.03835 -12.97025 -12.82027 -12.67659 -12.63735 -12.37739 -12.15768 -12.11756 -11.60228 -11.48717 -11.12219 -10.68867 -10.54767 -9.95718 -9.85721 -9.55214 -9.27217 -8.19337 -6.36189 -0.28085 0.07857 0.46619 1.23709 1.45831 1.46242 1.54363 2.08188 2.37956 2.46022 2.63663 2.78153 3.10471 3.24046 3.47560 3.69573 3.98874 4.04524 4.22434 4.27705 4.41228 4.49101 4.55511 4.63015 4.63427 4.66718 4.71481 4.87554 4.96417 4.99620 4.99878 5.01716 5.11919 5.14736 5.22856 5.34721 5.38845 5.55209 5.57531 5.67101 5.78317 5.90126 5.93758 6.11110 6.23543 6.50094 6.65567 6.75190 7.07804 7.35532 8.85490 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.022930 B = 0.002296 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.817094 B =12191.653032 C =13019.971271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.017 0.983 5 C -0.555 4.555 6 H 0.067 0.933 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.671 5.671 14 C 0.497 3.503 15 O -0.542 6.542 16 C 0.516 3.484 17 O -0.518 6.518 18 N -0.633 5.633 19 C 0.161 3.839 20 C -0.124 4.124 21 C -0.089 4.089 22 C 0.038 3.962 23 N -0.529 5.529 24 C 0.027 3.973 25 C 0.028 3.972 26 C 0.120 3.880 27 F -0.140 7.140 28 C -0.170 4.170 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.267 0.733 35 H 0.408 0.592 36 H 0.436 0.564 37 H 0.169 0.831 38 H 0.168 0.832 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.487 10.226 17.184 26.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.593 4.593 6 H 0.085 0.915 7 C -0.178 4.178 8 N -0.546 5.546 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.320 5.320 14 C 0.277 3.723 15 O -0.421 6.421 16 C 0.298 3.702 17 O -0.393 6.393 18 N -0.281 5.281 19 C 0.067 3.933 20 C -0.145 4.145 21 C -0.109 4.109 22 C -0.058 4.058 23 N -0.250 5.250 24 C -0.119 4.119 25 C -0.118 4.118 26 C 0.099 3.901 27 F -0.118 7.118 28 C -0.192 4.192 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.243 0.757 36 H 0.277 0.723 37 H 0.187 0.813 38 H 0.186 0.814 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.958 10.351 17.157 26.250 hybrid contribution 0.915 -0.316 -0.661 1.172 sum -16.043 10.035 16.496 25.104 Atomic orbital electron populations 1.21709 0.96379 0.99763 1.00501 1.21825 0.94330 0.98455 1.01688 1.18646 0.94015 0.89645 0.80267 0.96563 1.21488 0.91318 1.39627 1.06904 0.91511 1.25654 1.03066 0.94194 0.94910 1.69994 1.37011 1.37861 1.09727 0.85477 0.79360 0.78405 0.77594 1.19278 1.20800 1.19869 1.46257 1.14419 1.52961 1.18399 1.19904 0.83763 0.80857 0.87820 1.90739 1.51461 1.59632 1.40307 1.20407 0.82648 0.79073 0.88028 1.90774 1.51391 1.57392 1.39745 1.43089 1.15447 1.49874 1.19649 1.17593 0.94299 0.93098 0.88300 1.21178 0.94414 1.01598 0.97289 1.21558 1.00273 0.95031 0.94087 1.18914 0.91654 1.00182 0.95015 1.59530 1.45663 1.13000 1.06837 1.22529 0.98939 0.96225 0.94234 1.22519 0.93360 0.93154 1.02731 1.17487 0.85721 0.94665 0.92184 1.91466 1.63486 1.76597 1.80262 1.20983 1.01406 0.99539 0.97223 0.93976 0.94435 0.93198 0.90290 0.94236 0.92340 0.75677 0.72314 0.81342 0.81444 0.92292 0.93152 0.89212 0.89355 0.92070 0.93156 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 8.51 71.98 0.61 -4.58 16 2 C -0.12 -5.83 5.45 30.59 0.17 -5.66 16 3 C 0.28 13.66 2.24 44.25 0.10 13.76 16 4 H 0.02 0.94 7.58 -2.39 -0.02 0.92 16 5 C -0.56 -29.05 8.73 25.60 0.22 -28.82 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.34 16 7 C 0.02 1.20 5.29 84.65 0.45 1.65 16 8 N -0.91 -50.03 11.29 21.44 0.24 -49.78 16 9 Si 0.97 41.74 29.54 68.60 2.03 43.76 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 N -0.67 -27.99 5.01 -447.55 -2.24 -30.23 16 14 C 0.50 18.80 6.45 87.23 0.56 19.36 16 15 O -0.54 -22.06 13.62 -3.29 -0.04 -22.11 16 16 C 0.52 16.51 7.62 87.23 0.66 17.18 16 17 O -0.52 -18.46 14.16 -3.36 -0.05 -18.51 16 18 N -0.63 -15.41 5.33 -304.74 -1.62 -17.03 16 19 C 0.16 3.63 6.28 38.19 0.24 3.87 16 20 C -0.12 -1.86 9.96 22.40 0.22 -1.64 16 21 C -0.09 -1.22 8.61 22.38 0.19 -1.03 16 22 C 0.04 0.73 4.74 38.19 0.18 0.91 16 23 N -0.53 -8.82 4.82 -744.66 -3.59 -12.41 16 24 C 0.03 0.32 9.34 127.69 1.19 1.51 16 25 C 0.03 0.32 9.33 127.69 1.19 1.51 16 26 C 0.12 3.06 7.31 22.46 0.16 3.23 16 27 F -0.14 -4.05 17.07 44.97 0.77 -3.29 16 28 C -0.17 -4.57 8.62 22.42 0.19 -4.37 16 29 H 0.04 1.64 5.65 -2.39 -0.01 1.63 16 30 H 0.04 1.63 7.85 -2.39 -0.02 1.61 16 31 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.08 4.14 5.95 -2.39 -0.01 4.13 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 35 H 0.41 16.04 8.01 -92.71 -0.74 15.30 16 36 H 0.44 8.76 8.30 -92.71 -0.77 7.99 16 37 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.17 1.19 7.04 -2.91 -0.02 1.17 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.05 0.42 7.11 -2.39 -0.02 0.40 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 0.81 8.12 -2.39 -0.02 0.79 16 44 H 0.05 0.39 7.49 -2.39 -0.02 0.37 16 45 H 0.13 4.00 6.41 -2.91 -0.02 3.99 16 Total: -1.00 -64.64 374.98 1.38 -63.26 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -0.46 Total: 29.46 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 6.36 Total: 16.88 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -7.22 Total: -109.46 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -0.09 Total: -40.62 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.77 Total: -3.29 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -64.64 1.38 -63.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873823335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.821 kcal (2) G-P(sol) polarization free energy of solvation -64.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds