Wall clock time and date at job start Tue Mar 31 2020 19:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47261 * 2 1 4 4 H 1.09003 * 109.49621 * 54.99551 * 3 2 1 5 5 C 1.53195 * 109.49696 * 294.93709 * 3 2 1 6 6 N 1.46926 * 108.77419 * 185.41461 * 5 3 2 7 7 C 1.34780 * 120.62810 * 233.63120 * 6 5 3 8 8 O 1.21632 * 119.99730 * 353.20506 * 7 6 5 9 9 C 1.47269 * 120.00121 * 173.21037 * 7 6 5 10 10 N 1.33556 * 123.13680 * 352.76929 * 9 7 6 11 11 C 1.28651 * 115.76273 * 179.83068 * 10 9 7 12 12 C 1.50702 * 124.72070 * 180.18482 * 11 10 9 13 13 S 1.70775 * 110.55791 * 0.42190 * 11 10 9 14 14 C 1.35208 * 123.13902 * 173.06091 * 9 7 6 15 15 C 1.50696 * 125.58772 * 359.97438 * 14 9 7 16 16 C 1.46923 * 118.74247 * 53.60442 * 6 5 3 17 17 C 1.53194 * 108.77523 * 306.39428 * 16 6 5 18 18 C 1.53038 * 109.49885 * 175.06587 * 3 2 1 19 19 H 1.08999 * 109.45887 * 61.29810 * 18 3 2 20 20 N 1.46498 * 109.46032 * 301.33528 * 18 3 2 21 21 C 1.36932 * 120.00093 * 155.00027 * 20 18 3 22 22 H 1.08007 * 120.00038 * 0.02562 * 21 20 18 23 23 C 1.38816 * 120.00061 * 180.02562 * 21 20 18 24 24 N 1.31614 * 119.99887 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99926 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47000 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.46909 * 120.00088 * 25 23 21 28 28 H 1.48503 * 109.46928 * 239.99848 * 25 23 21 29 29 H 1.08992 * 109.46950 * 300.00335 * 1 2 3 30 30 H 1.09000 * 109.46985 * 59.99825 * 1 2 3 31 31 H 1.09001 * 109.47061 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47299 * 240.00347 * 2 1 3 33 33 H 1.09001 * 109.47416 * 119.99863 * 2 1 3 34 34 H 1.09006 * 109.58827 * 305.19516 * 5 3 2 35 35 H 1.09005 * 109.58910 * 65.48138 * 5 3 2 36 36 H 1.08996 * 109.47228 * 180.23857 * 12 11 10 37 37 H 1.08996 * 109.47161 * 300.24472 * 12 11 10 38 38 H 1.08999 * 109.46620 * 60.24326 * 12 11 10 39 39 H 1.08996 * 109.47487 * 90.00062 * 15 14 9 40 40 H 1.09004 * 109.46962 * 209.99968 * 15 14 9 41 41 H 1.08995 * 109.47198 * 329.99468 * 15 14 9 42 42 H 1.09001 * 109.58378 * 66.17965 * 16 6 5 43 43 H 1.09000 * 109.58815 * 186.60838 * 16 6 5 44 44 H 1.08994 * 109.49351 * 174.58435 * 17 16 6 45 45 H 1.08995 * 109.49725 * 294.65022 * 17 16 6 46 46 H 0.97006 * 119.99999 * 335.00682 * 20 18 3 47 47 H 0.97007 * 120.00078 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6056 1.9820 0.8417 5 6 1.6365 2.1275 -1.3095 6 7 2.2430 3.4651 -1.3499 7 6 1.4832 4.5574 -1.5646 8 8 0.3072 4.4338 -1.8494 9 6 2.0769 5.9007 -1.4544 10 7 3.3181 6.1161 -1.0111 11 6 3.6938 7.3461 -0.9762 12 6 5.0496 7.8167 -0.5163 13 16 2.4401 8.3716 -1.5173 14 6 1.4142 7.0313 -1.7871 15 6 0.0024 7.0986 -2.3099 16 6 3.6934 3.5895 -1.1513 17 6 4.0739 2.8881 0.1564 18 6 3.5654 1.4450 0.1241 19 1 4.0001 0.9264 -0.7304 20 7 3.9557 0.7616 1.3597 21 6 5.1939 0.1858 1.4620 22 1 5.8829 0.2359 0.6318 23 6 5.5635 -0.4622 2.6326 24 7 4.7236 -0.5237 3.6441 25 14 7.2529 -1.2470 2.7723 26 1 8.0009 -1.0404 1.5062 27 1 7.9973 -0.6226 3.8952 28 1 7.1030 -2.7025 3.0263 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9931 1.5390 -2.1548 35 1 0.5509 2.2146 -1.3569 36 1 5.0994 8.9034 -0.5848 37 1 5.2093 7.5101 0.5174 38 1 5.8206 7.3771 -1.1490 39 1 -0.6907 7.1914 -1.4738 40 1 -0.1014 7.9633 -2.9655 41 1 -0.2219 6.1901 -2.8688 42 1 4.2178 3.1201 -1.9836 43 1 3.9653 4.6434 -1.0931 44 1 5.1582 2.8893 0.2677 45 1 3.6214 3.4145 0.9967 46 1 3.3369 0.7168 2.1055 47 1 4.9817 -0.9768 4.4620 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037873617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:56 Heat of formation + Delta-G solvation = 21.560095 kcal Electronic energy + Delta-G solvation = -27936.072825 eV Core-core repulsion = 24245.995399 eV Total energy + Delta-G solvation = -3690.077426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.94653 -39.09212 -37.64605 -34.69357 -33.70072 -33.45150 -31.64669 -30.57176 -29.36430 -28.79814 -26.73677 -25.14397 -24.26958 -23.43744 -22.70994 -20.88459 -20.61818 -19.57771 -18.93668 -18.44053 -17.02455 -16.18766 -16.02106 -15.69963 -15.07380 -14.78303 -14.50350 -14.07443 -13.78352 -13.68962 -13.62412 -13.55056 -13.38811 -13.21875 -12.98685 -12.71556 -12.51872 -12.45509 -12.34848 -12.07715 -11.85672 -11.69789 -11.49061 -11.21746 -10.89084 -10.83852 -10.61442 -10.30321 -10.14070 -10.10209 -9.91011 -9.70784 -9.64367 -9.51481 -9.17085 -9.01568 -8.70975 -8.29167 -6.88835 -5.73130 -3.00835 0.32490 0.94974 1.36023 1.81950 3.20251 3.34615 3.44409 3.50243 3.52315 3.79498 4.57099 4.61695 4.70040 4.78385 5.01084 5.18693 5.21958 5.29179 5.37201 5.41696 5.45170 5.55762 5.58318 5.66045 5.67291 5.70199 5.74801 5.79942 5.91797 5.97700 6.06428 6.18940 6.22286 6.36496 6.46367 6.49131 6.57837 6.59305 6.73387 6.85984 6.94985 7.06530 7.18810 7.25819 7.65377 7.73789 8.25811 8.45372 9.56679 10.15464 10.50696 11.49632 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.003430 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.610714 B = 8162.018075 C = 9909.413482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.068 0.932 5 C 0.119 3.881 6 N -0.583 5.583 7 C 0.590 3.410 8 O -0.544 6.544 9 C 0.008 3.992 10 N -0.428 5.428 11 C 0.023 3.977 12 C -0.078 4.078 13 S 0.194 5.806 14 C -0.188 4.188 15 C -0.082 4.082 16 C 0.054 3.946 17 C -0.140 4.140 18 C 0.181 3.819 19 H 0.045 0.955 20 N -0.721 5.721 21 C -0.233 4.233 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.052 0.948 43 H 0.153 0.847 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.383 0.617 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.731 19.208 -12.702 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.086 0.914 5 C -0.004 4.004 6 N -0.313 5.313 7 C 0.376 3.624 8 O -0.423 6.423 9 C -0.125 4.125 10 N -0.143 5.143 11 C -0.256 4.256 12 C -0.138 4.138 13 S 0.451 5.549 14 C -0.312 4.312 15 C -0.140 4.140 16 C -0.069 4.069 17 C -0.181 4.181 18 C 0.071 3.929 19 H 0.063 0.937 20 N -0.361 5.361 21 C -0.364 4.364 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.582 5.582 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.121 0.879 42 H 0.070 0.930 43 H 0.169 0.831 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.217 0.783 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.865 19.701 -12.808 24.219 hybrid contribution 0.615 -1.535 0.527 1.735 sum -5.250 18.166 -12.282 22.548 Atomic orbital electron populations 1.21843 0.96865 1.00989 1.01262 1.21454 0.94318 0.95758 1.03440 1.21764 0.97867 0.96094 0.96562 0.91358 1.21795 0.99194 0.81494 0.97904 1.47967 1.09308 1.05836 1.68205 1.17075 0.85314 0.82511 0.77528 1.90724 1.15744 1.86008 1.49867 1.20358 0.90404 0.95475 1.06243 1.66618 1.13189 1.17990 1.16516 1.27316 1.02602 0.91799 1.03850 1.20471 0.88790 1.01196 1.03337 1.82765 1.04212 1.10152 1.57736 1.25481 1.03858 0.95894 1.05971 1.20473 0.87802 1.04306 1.01467 1.23301 0.77966 1.07826 0.97791 1.22512 1.01653 0.98310 0.95655 1.20243 0.90643 0.91055 0.90951 0.93685 1.42420 1.16396 1.64561 1.12762 1.19273 0.91771 1.26854 0.98543 0.91249 1.24708 0.98082 1.01734 0.96473 1.69671 1.35129 1.48599 1.04768 0.86167 0.84167 0.78875 0.77301 1.20623 1.22001 1.21995 0.93033 0.93233 0.93187 0.92486 0.89789 0.91686 0.89299 0.90200 0.88890 0.89050 0.89967 0.91470 0.87915 0.92973 0.83131 0.91065 0.92621 0.78303 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.67 37.16 0.36 -1.86 16 2 C -0.11 -1.90 5.31 -26.73 -0.14 -2.05 16 3 C -0.10 -1.82 1.92 -90.50 -0.17 -1.99 16 4 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 5 C 0.12 1.90 5.30 -3.71 -0.02 1.88 16 6 N -0.58 -9.52 2.97 -174.08 -0.52 -10.03 16 7 C 0.59 9.68 7.64 -12.59 -0.10 9.58 16 8 O -0.54 -9.57 13.66 5.25 0.07 -9.49 16 9 C 0.01 0.12 6.52 -84.53 -0.55 -0.43 16 10 N -0.43 -5.66 6.72 -8.51 -0.06 -5.72 16 11 C 0.02 0.23 7.34 -13.61 -0.10 0.13 16 12 C -0.08 -0.52 10.47 36.01 0.38 -0.14 16 13 S 0.19 1.62 22.88 -107.50 -2.46 -0.84 16 14 C -0.19 -2.18 6.40 -35.39 -0.23 -2.40 16 15 C -0.08 -0.82 9.56 36.00 0.34 -0.47 16 16 C 0.05 0.87 6.28 -3.71 -0.02 0.84 16 17 C -0.14 -2.62 5.66 -26.61 -0.15 -2.77 16 18 C 0.18 3.65 2.19 -67.89 -0.15 3.50 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 N -0.72 -17.89 4.33 -53.39 -0.23 -18.12 16 21 C -0.23 -6.39 9.93 -15.06 -0.15 -6.54 16 22 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 25 Si 0.90 22.38 29.55 -169.99 -5.02 17.36 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.69 7.22 -51.93 -0.37 1.32 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.43 5.77 -51.93 -0.30 1.13 16 36 H 0.08 0.33 8.12 -51.93 -0.42 -0.09 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 1.22 6.18 -51.93 -0.32 0.90 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.15 2.31 3.53 -91.00 -0.32 1.98 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.38 10.24 7.51 -40.82 -0.31 9.93 16 47 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -31.97 381.14 -9.98 -41.95 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -7.43 Total: 9.77 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -0.80 Total: -3.22 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.08 Total: -61.27 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.46 Total: -0.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.97 -9.98 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037873617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.512 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds