Wall clock time and date at job start Tue Mar 31 2020 19:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47104 * 2 1 4 4 H 1.08994 * 109.49500 * 304.93646 * 3 2 1 5 5 C 1.53199 * 109.49669 * 64.99843 * 3 2 1 6 6 N 1.46925 * 108.77453 * 174.62003 * 5 3 2 7 7 C 1.34778 * 120.62748 * 126.36672 * 6 5 3 8 8 O 1.21623 * 120.00400 * 2.29075 * 7 6 5 9 9 C 1.47271 * 119.99540 * 182.29448 * 7 6 5 10 10 N 1.33555 * 123.14420 * 352.94363 * 9 7 6 11 11 C 1.28648 * 115.77118 * 179.97438 * 10 9 7 12 12 C 1.50697 * 124.72382 * 179.97438 * 11 10 9 13 13 S 1.70778 * 110.55380 * 0.22158 * 11 10 9 14 14 C 1.35210 * 123.13631 * 172.90786 * 9 7 6 15 15 C 1.50700 * 125.59114 * 0.02796 * 14 9 7 16 16 C 1.46925 * 118.73855 * 306.64553 * 6 5 3 17 17 C 1.52761 * 109.00979 * 53.30522 * 16 6 5 18 18 C 1.53035 * 109.52456 * 184.85328 * 3 2 1 19 19 H 1.09010 * 109.46083 * 298.68190 * 18 3 2 20 20 N 1.46500 * 109.46236 * 58.65816 * 18 3 2 21 21 C 1.36933 * 119.99715 * 204.99775 * 20 18 3 22 22 H 1.07993 * 120.00900 * 0.02562 * 21 20 18 23 23 C 1.38820 * 119.99250 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00342 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99471 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47483 * 90.00093 * 25 23 21 27 27 H 1.48504 * 109.46986 * 210.00197 * 25 23 21 28 28 H 1.48505 * 109.47433 * 329.99519 * 25 23 21 29 29 H 1.08995 * 109.47256 * 299.99998 * 1 2 3 30 30 H 1.08998 * 109.46670 * 60.00289 * 1 2 3 31 31 H 1.08997 * 109.46946 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47256 * 240.00002 * 2 1 3 33 33 H 1.08998 * 109.47032 * 119.99308 * 2 1 3 34 34 H 1.08998 * 109.58789 * 54.83022 * 5 3 2 35 35 H 1.09004 * 109.58237 * 294.40544 * 5 3 2 36 36 H 1.08999 * 109.47275 * 89.99375 * 12 11 10 37 37 H 1.08999 * 109.47051 * 329.99630 * 12 11 10 38 38 H 1.08995 * 109.47303 * 209.99018 * 12 11 10 39 39 H 1.08999 * 109.46862 * 90.00327 * 15 14 9 40 40 H 1.08991 * 109.47199 * 210.00360 * 15 14 9 41 41 H 1.09001 * 109.47149 * 330.00603 * 15 14 9 42 42 H 1.09002 * 109.58273 * 173.14552 * 16 6 5 43 43 H 1.08995 * 109.58039 * 293.56734 * 16 6 5 44 44 H 1.08999 * 109.55924 * 185.55210 * 17 16 6 45 45 H 1.08999 * 109.35361 * 65.50613 * 17 16 6 46 46 H 0.96996 * 119.99593 * 25.00269 * 20 18 3 47 47 H 0.96993 * 119.99252 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2408 3.4660 1.3490 7 6 1.4802 4.5580 1.5625 8 8 0.2871 4.4379 1.7655 9 6 2.0940 5.8967 1.5498 10 7 3.4123 6.0948 1.4699 11 6 3.7942 7.3233 1.4693 12 6 5.2293 7.7760 1.3875 13 16 2.4491 8.3695 1.5809 14 6 1.3752 7.0399 1.6172 15 6 -0.1261 7.1276 1.7140 16 6 3.6906 3.5915 1.1459 17 6 4.0733 2.8890 -0.1555 18 6 3.5655 1.4457 -0.1220 19 1 3.9994 0.9279 0.7335 20 7 3.9578 0.7618 -1.3568 21 6 5.1965 0.1866 -1.4569 22 1 5.8841 0.2368 -0.6257 23 6 5.5683 -0.4609 -2.6272 24 7 4.7306 -0.5216 -3.6405 25 14 7.2578 -1.2461 -2.7636 26 1 7.1878 -2.6551 -2.2998 27 1 7.7064 -1.2126 -4.1789 28 1 8.2225 -0.4949 -1.9208 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.9912 1.5401 2.1547 35 1 0.5496 2.2169 1.3540 36 1 5.5107 7.9046 0.3423 37 1 5.8734 7.0267 1.8476 38 1 5.3417 8.7241 1.9132 39 1 -0.4231 7.1292 2.7628 40 1 -0.4678 8.0468 1.2383 41 1 -0.5734 6.2702 1.2111 42 1 3.9609 4.6456 1.0838 43 1 4.2177 3.1253 1.9783 44 1 5.1577 2.8907 -0.2658 45 1 3.6207 3.4146 -0.9963 46 1 3.3402 0.7165 -2.1033 47 1 4.9904 -0.9745 -4.4580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037873623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:05 Heat of formation + Delta-G solvation = 22.171588 kcal Electronic energy + Delta-G solvation = -27912.593828 eV Core-core repulsion = 24222.542919 eV Total energy + Delta-G solvation = -3690.050909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95800 -39.10476 -37.64740 -34.69727 -33.70807 -33.45664 -31.66067 -30.58229 -29.38860 -28.80140 -26.73967 -25.15533 -24.28657 -23.41361 -22.71795 -20.89693 -20.61323 -19.58466 -18.93730 -18.46564 -17.03364 -16.09510 -16.03923 -15.79307 -15.06964 -14.72375 -14.57538 -14.09945 -13.79167 -13.68222 -13.62899 -13.56478 -13.32041 -13.22737 -12.91349 -12.75840 -12.58277 -12.46647 -12.42516 -12.03754 -11.85804 -11.70026 -11.50426 -11.21335 -10.88681 -10.83406 -10.61530 -10.30425 -10.16173 -10.12038 -9.91119 -9.70787 -9.65891 -9.51786 -9.16116 -9.01915 -8.69405 -8.29787 -6.89124 -5.73311 -3.01093 0.31528 0.93915 1.35716 1.82188 3.19522 3.35650 3.44657 3.49989 3.51423 3.78071 4.56408 4.61608 4.69404 4.78531 5.01115 5.16775 5.18959 5.28790 5.37673 5.40818 5.44576 5.55794 5.57989 5.65021 5.67336 5.70154 5.75685 5.80416 5.92409 5.98276 6.06615 6.19017 6.22386 6.36651 6.45946 6.48727 6.56883 6.59622 6.73217 6.85207 6.94754 7.05916 7.17436 7.24945 7.65525 7.73124 8.26458 8.45274 9.56482 10.15139 10.50426 11.49411 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.003400 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.120197 B = 8234.166494 C = 9930.966187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.068 0.932 5 C 0.118 3.882 6 N -0.582 5.582 7 C 0.589 3.411 8 O -0.545 6.545 9 C 0.008 3.992 10 N -0.428 5.428 11 C 0.021 3.979 12 C -0.079 4.079 13 S 0.195 5.805 14 C -0.187 4.187 15 C -0.082 4.082 16 C 0.053 3.947 17 C -0.145 4.145 18 C 0.182 3.818 19 H 0.046 0.954 20 N -0.721 5.721 21 C -0.234 4.234 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.283 1.283 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.156 0.844 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 19.237 12.723 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.086 0.914 5 C -0.005 4.005 6 N -0.312 5.312 7 C 0.375 3.625 8 O -0.424 6.424 9 C -0.125 4.125 10 N -0.144 5.144 11 C -0.257 4.257 12 C -0.139 4.139 13 S 0.453 5.547 14 C -0.310 4.310 15 C -0.141 4.141 16 C -0.071 4.071 17 C -0.186 4.186 18 C 0.071 3.929 19 H 0.064 0.936 20 N -0.361 5.361 21 C -0.366 4.366 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.582 5.582 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.171 0.829 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.889 19.736 12.846 24.273 hybrid contribution 0.630 -1.554 -0.522 1.757 sum -5.259 18.181 12.324 22.585 Atomic orbital electron populations 1.21842 0.96850 1.00987 1.01272 1.21451 0.94330 0.95750 1.03436 1.21762 0.97822 0.96123 0.96577 0.91362 1.21809 0.99281 0.81485 0.97919 1.47990 1.09401 1.05828 1.67982 1.17064 0.85558 0.82454 0.77416 1.90723 1.14358 1.85768 1.51566 1.20353 0.87839 0.95378 1.08914 1.66644 1.13477 1.18433 1.15832 1.27316 1.02332 0.91773 1.04265 1.20486 0.86974 1.02205 1.04272 1.82761 0.96375 1.09955 1.65641 1.25478 1.03539 0.95810 1.06219 1.20480 0.85915 1.04050 1.03648 1.23303 0.77994 1.08019 0.97739 1.22507 1.01752 0.98573 0.95780 1.20239 0.90651 0.90975 0.90989 0.93632 1.42413 1.16393 1.64578 1.12755 1.19228 0.91802 1.27010 0.98513 0.91295 1.24710 0.98100 1.01709 0.96442 1.69662 1.35292 1.48532 1.04704 0.86235 0.84172 0.79328 0.76730 1.21830 1.21897 1.20838 0.93216 0.93031 0.93193 0.89805 0.92484 0.91637 0.89231 0.89190 0.88858 0.90007 0.90007 0.91412 0.87842 0.82874 0.92662 0.90939 0.92843 0.78304 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.67 37.16 0.36 -1.85 16 2 C -0.11 -1.90 5.31 -26.73 -0.14 -2.05 16 3 C -0.10 -1.81 1.92 -90.50 -0.17 -1.99 16 4 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 5 C 0.12 1.88 5.32 -3.71 -0.02 1.86 16 6 N -0.58 -9.51 2.98 -174.35 -0.52 -10.03 16 7 C 0.59 9.68 7.66 -12.59 -0.10 9.58 16 8 O -0.54 -9.59 13.62 5.26 0.07 -9.52 16 9 C 0.01 0.12 6.55 -84.52 -0.55 -0.44 16 10 N -0.43 -5.58 6.63 -8.51 -0.06 -5.64 16 11 C 0.02 0.21 7.34 -13.61 -0.10 0.11 16 12 C -0.08 -0.51 10.46 36.00 0.38 -0.13 16 13 S 0.20 1.62 22.89 -107.50 -2.46 -0.84 16 14 C -0.19 -2.17 6.40 -35.39 -0.23 -2.39 16 15 C -0.08 -0.83 9.56 36.01 0.34 -0.49 16 16 C 0.05 0.84 6.21 -3.93 -0.02 0.82 16 17 C -0.14 -2.71 5.64 -26.83 -0.15 -2.86 16 18 C 0.18 3.66 2.20 -67.89 -0.15 3.51 16 19 H 0.05 0.95 8.08 -51.92 -0.42 0.53 16 20 N -0.72 -17.90 4.33 -53.39 -0.23 -18.13 16 21 C -0.23 -6.43 9.93 -15.06 -0.15 -6.58 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 25 Si 0.90 22.39 29.55 -169.99 -5.02 17.36 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.69 7.22 -51.93 -0.38 1.31 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.44 5.73 -51.93 -0.30 1.14 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 1.28 6.19 -51.93 -0.32 0.95 16 42 H 0.16 2.35 3.52 -93.76 -0.33 2.02 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.38 10.23 7.51 -40.82 -0.31 9.93 16 47 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -31.96 380.99 -10.00 -41.96 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -7.44 Total: 9.87 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.80 Total: -3.37 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.08 Total: -61.20 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.07 Total: -9.52 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.46 Total: -0.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.96 -10.00 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037873623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.131 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds