Wall clock time and date at job start Tue Mar 31 2020 19:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47104 * 2 1 4 4 H 1.08994 * 109.49500 * 304.93646 * 3 2 1 5 5 C 1.53199 * 109.49669 * 64.99843 * 3 2 1 6 6 N 1.46925 * 108.77453 * 174.62003 * 5 3 2 7 7 C 1.34778 * 120.62748 * 126.36672 * 6 5 3 8 8 O 1.21623 * 120.00400 * 2.29075 * 7 6 5 9 9 C 1.47271 * 119.99540 * 182.29448 * 7 6 5 10 10 N 1.33555 * 123.14420 * 352.94363 * 9 7 6 11 11 C 1.28648 * 115.77118 * 179.97438 * 10 9 7 12 12 C 1.50697 * 124.72382 * 179.97438 * 11 10 9 13 13 S 1.70778 * 110.55380 * 0.22158 * 11 10 9 14 14 C 1.35210 * 123.13631 * 172.90786 * 9 7 6 15 15 C 1.50700 * 125.59114 * 0.02796 * 14 9 7 16 16 C 1.46925 * 118.73855 * 306.64553 * 6 5 3 17 17 C 1.52761 * 109.00979 * 53.30522 * 16 6 5 18 18 C 1.53035 * 109.52456 * 184.85328 * 3 2 1 19 19 H 1.09010 * 109.46083 * 298.68190 * 18 3 2 20 20 N 1.46500 * 109.46236 * 58.65816 * 18 3 2 21 21 C 1.36933 * 119.99715 * 204.99775 * 20 18 3 22 22 H 1.07993 * 120.00900 * 0.02562 * 21 20 18 23 23 C 1.38820 * 119.99250 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00342 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99471 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47483 * 90.00093 * 25 23 21 27 27 H 1.48504 * 109.46986 * 210.00197 * 25 23 21 28 28 H 1.48505 * 109.47433 * 329.99519 * 25 23 21 29 29 H 1.08995 * 109.47256 * 299.99998 * 1 2 3 30 30 H 1.08998 * 109.46670 * 60.00289 * 1 2 3 31 31 H 1.08997 * 109.46946 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47256 * 240.00002 * 2 1 3 33 33 H 1.08998 * 109.47032 * 119.99308 * 2 1 3 34 34 H 1.08998 * 109.58789 * 54.83022 * 5 3 2 35 35 H 1.09004 * 109.58237 * 294.40544 * 5 3 2 36 36 H 1.08999 * 109.47275 * 89.99375 * 12 11 10 37 37 H 1.08999 * 109.47051 * 329.99630 * 12 11 10 38 38 H 1.08995 * 109.47303 * 209.99018 * 12 11 10 39 39 H 1.08999 * 109.46862 * 90.00327 * 15 14 9 40 40 H 1.08991 * 109.47199 * 210.00360 * 15 14 9 41 41 H 1.09001 * 109.47149 * 330.00603 * 15 14 9 42 42 H 1.09002 * 109.58273 * 173.14552 * 16 6 5 43 43 H 1.08995 * 109.58039 * 293.56734 * 16 6 5 44 44 H 1.08999 * 109.55924 * 185.55210 * 17 16 6 45 45 H 1.08999 * 109.35361 * 65.50613 * 17 16 6 46 46 H 0.96996 * 119.99593 * 25.00269 * 20 18 3 47 47 H 0.96993 * 119.99252 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2408 3.4660 1.3490 7 6 1.4802 4.5580 1.5625 8 8 0.2871 4.4379 1.7655 9 6 2.0940 5.8967 1.5498 10 7 3.4123 6.0948 1.4699 11 6 3.7942 7.3233 1.4693 12 6 5.2293 7.7760 1.3875 13 16 2.4491 8.3695 1.5809 14 6 1.3752 7.0399 1.6172 15 6 -0.1261 7.1276 1.7140 16 6 3.6906 3.5915 1.1459 17 6 4.0733 2.8890 -0.1555 18 6 3.5655 1.4457 -0.1220 19 1 3.9994 0.9279 0.7335 20 7 3.9578 0.7618 -1.3568 21 6 5.1965 0.1866 -1.4569 22 1 5.8841 0.2368 -0.6257 23 6 5.5683 -0.4609 -2.6272 24 7 4.7306 -0.5216 -3.6405 25 14 7.2578 -1.2461 -2.7636 26 1 7.1878 -2.6551 -2.2998 27 1 7.7064 -1.2126 -4.1789 28 1 8.2225 -0.4949 -1.9208 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.9912 1.5401 2.1547 35 1 0.5496 2.2169 1.3540 36 1 5.5107 7.9046 0.3423 37 1 5.8734 7.0267 1.8476 38 1 5.3417 8.7241 1.9132 39 1 -0.4231 7.1292 2.7628 40 1 -0.4678 8.0468 1.2383 41 1 -0.5734 6.2702 1.2111 42 1 3.9609 4.6456 1.0838 43 1 4.2177 3.1253 1.9783 44 1 5.1577 2.8907 -0.2658 45 1 3.6207 3.4146 -0.9963 46 1 3.3402 0.7165 -2.1033 47 1 4.9904 -0.9745 -4.4580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037873623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:04 Heat of formation + Delta-G solvation = 3.165699 kcal Electronic energy + Delta-G solvation = -27913.417985 eV Core-core repulsion = 24222.542919 eV Total energy + Delta-G solvation = -3690.875067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.02059 -40.29147 -39.01090 -36.25688 -35.32288 -34.27399 -33.47621 -31.37379 -31.06684 -30.12315 -27.83965 -26.45000 -25.69248 -24.62701 -24.30179 -22.29191 -21.77143 -21.01129 -19.98070 -19.52131 -19.03134 -17.29344 -17.21398 -16.83495 -16.73775 -15.97753 -15.69004 -15.62888 -15.31578 -15.12289 -14.74178 -14.55798 -14.49779 -14.27316 -14.25880 -13.88269 -13.87497 -13.56415 -13.19027 -13.12948 -13.03678 -12.89264 -12.84649 -12.70468 -12.60611 -12.54765 -12.17690 -12.10641 -11.85471 -11.61702 -11.54593 -11.12556 -11.06073 -10.95373 -10.42314 -10.02633 -9.90991 -9.54399 -8.94180 -7.91540 -5.19347 -0.51645 0.19886 0.55363 0.84865 1.47316 1.48709 1.56928 2.00508 2.23648 2.57397 2.93307 3.41608 3.58247 3.75409 3.79108 3.92807 3.94297 4.02994 4.14021 4.30775 4.32401 4.37084 4.44013 4.54106 4.61070 4.64029 4.72862 4.73798 4.75557 4.78908 4.80736 4.87224 4.97614 5.05426 5.12235 5.16051 5.18957 5.26216 5.33982 5.38711 5.49370 5.54011 5.55971 5.78454 6.27253 6.30234 6.49251 7.04493 7.35885 8.10939 8.36088 9.32084 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.003400 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.120197 B = 8234.166494 C = 9930.966187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.091 4.091 4 H 0.049 0.951 5 C 0.124 3.876 6 N -0.589 5.589 7 C 0.583 3.417 8 O -0.564 6.564 9 C -0.025 4.025 10 N -0.460 5.460 11 C 0.011 3.989 12 C -0.082 4.082 13 S 0.288 5.712 14 C -0.202 4.202 15 C -0.081 4.081 16 C 0.062 3.938 17 C -0.132 4.132 18 C 0.179 3.821 19 H 0.043 0.957 20 N -0.730 5.730 21 C -0.233 4.233 22 H 0.075 0.925 23 C -0.075 4.075 24 N -0.971 5.971 25 Si 0.969 3.031 26 H -0.289 1.289 27 H -0.298 1.298 28 H -0.269 1.269 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.170 0.830 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.034 0.966 46 H 0.370 0.630 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.202 21.670 14.479 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.111 4.111 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.319 5.319 7 C 0.371 3.629 8 O -0.445 6.445 9 C -0.158 4.158 10 N -0.177 5.177 11 C -0.267 4.267 12 C -0.141 4.141 13 S 0.546 5.454 14 C -0.327 4.327 15 C -0.140 4.140 16 C -0.061 4.061 17 C -0.173 4.173 18 C 0.070 3.930 19 H 0.061 0.939 20 N -0.369 5.369 21 C -0.364 4.364 22 H 0.093 0.907 23 C -0.267 4.267 24 N -0.622 5.622 25 Si 0.799 3.201 26 H -0.216 1.216 27 H -0.225 1.225 28 H -0.194 1.194 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.130 0.870 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.185 0.815 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.202 0.798 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.321 22.207 14.654 27.133 hybrid contribution 0.418 -2.137 -1.014 2.402 sum -4.904 20.070 13.639 24.756 Atomic orbital electron populations 1.21771 0.94605 1.02043 1.01744 1.21353 0.96282 0.94847 1.01944 1.21603 0.95751 0.96637 0.97068 0.93225 1.21715 0.99445 0.81732 0.96965 1.48045 1.09454 1.06009 1.68400 1.17483 0.85422 0.83369 0.76666 1.90698 1.15094 1.86322 1.52394 1.20123 0.88858 0.94777 1.12015 1.66380 1.13072 1.20488 1.17716 1.27883 1.04491 0.91569 1.02719 1.20691 0.84748 1.03436 1.05264 1.82412 0.93252 1.06470 1.63216 1.25852 1.04833 0.96979 1.04993 1.20489 0.85155 1.04269 1.04089 1.23302 0.78039 1.08784 0.95976 1.22301 1.00649 0.97435 0.96910 1.20429 0.92455 0.91248 0.88858 0.93927 1.42563 1.15524 1.65033 1.13783 1.19587 0.92566 1.25888 0.98395 0.90744 1.25490 1.01728 1.03105 0.96375 1.69828 1.37184 1.50040 1.05138 0.85197 0.80230 0.78370 0.76333 1.21621 1.22476 1.19367 0.91690 0.93560 0.91866 0.93370 0.91756 0.90370 0.89018 0.88323 0.89127 0.87032 0.89253 0.88661 0.90478 0.81466 0.91999 0.92086 0.94697 0.79815 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.67 71.98 0.70 -3.45 16 2 C -0.11 -3.69 5.31 30.60 0.16 -3.53 16 3 C -0.09 -3.28 1.92 -10.71 -0.02 -3.30 16 4 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 5 C 0.12 3.97 5.32 86.37 0.46 4.43 16 6 N -0.59 -19.32 2.98 -823.77 -2.45 -21.77 16 7 C 0.58 19.21 7.66 86.62 0.66 19.87 16 8 O -0.56 -20.04 13.62 -4.10 -0.06 -20.10 16 9 C -0.02 -0.69 6.55 40.56 0.27 -0.42 16 10 N -0.46 -11.45 6.63 -180.83 -1.20 -12.64 16 11 C 0.01 0.19 7.34 88.57 0.65 0.84 16 12 C -0.08 -0.80 10.46 71.23 0.74 -0.05 16 13 S 0.29 3.82 22.89 -56.49 -1.29 2.53 16 14 C -0.20 -4.34 6.40 24.99 0.16 -4.18 16 15 C -0.08 -1.53 9.56 71.24 0.68 -0.85 16 16 C 0.06 1.98 6.21 86.22 0.54 2.52 16 17 C -0.13 -5.05 5.64 30.53 0.17 -4.88 16 18 C 0.18 7.40 2.20 45.02 0.10 7.50 16 19 H 0.04 1.80 8.08 -2.38 -0.02 1.78 16 20 N -0.73 -37.52 4.33 -322.82 -1.40 -38.92 16 21 C -0.23 -12.98 9.93 84.04 0.83 -12.15 16 22 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 23 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 24 N -0.97 -60.24 13.06 21.65 0.28 -59.96 16 25 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 29 H 0.06 1.67 6.70 -2.39 -0.02 1.66 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 2.03 7.22 -2.39 -0.02 2.01 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.09 2.92 5.73 -2.38 -0.01 2.91 16 36 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.89 6.19 -2.39 -0.01 1.88 16 42 H 0.17 5.09 3.52 -84.97 -0.30 4.80 16 43 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.37 20.77 7.51 -92.71 -0.70 20.07 16 47 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -71.28 380.99 2.48 -68.80 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: 0.00 Total: 34.98 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 6.57 Total: -1.53 kcal Atomic # 7 Polarization: -128.53 SS G_CDS: -4.77 Total: -133.30 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.06 Total: -20.10 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.29 Total: 2.53 kcal Total: -71.28 2.48 -68.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037873623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.966 kcal (2) G-P(sol) polarization free energy of solvation -71.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds