Wall clock time and date at job start Tue Mar 31 2020 19:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09002 * 109.49961 * 305.00645 * 3 2 1 5 5 C 1.53196 * 109.49598 * 65.06552 * 3 2 1 6 6 N 1.46923 * 108.77932 * 174.58776 * 5 3 2 7 7 C 1.34777 * 120.63509 * 126.36712 * 6 5 3 8 8 O 1.21281 * 119.99530 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.00380 * 180.02562 * 7 6 5 10 10 C 1.52995 * 109.47340 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47578 * 179.97438 * 10 9 7 12 12 C 1.33638 * 126.04104 * 89.71220 * 11 10 9 13 13 N 1.31781 * 114.50518 * 179.79336 * 12 11 10 14 14 C 1.29032 * 117.11794 * 0.51937 * 13 12 11 15 15 S 1.70968 * 110.16838 * 359.71536 * 14 13 12 16 16 C 1.46922 * 118.73739 * 306.39669 * 6 5 3 17 17 C 1.53195 * 108.78179 * 53.60510 * 16 6 5 18 18 C 1.53038 * 109.50012 * 184.93683 * 3 2 1 19 19 H 1.08997 * 109.46213 * 58.66491 * 18 3 2 20 20 N 1.46500 * 109.45876 * 298.70327 * 18 3 2 21 21 C 1.36936 * 119.99759 * 155.00443 * 20 18 3 22 22 H 1.08001 * 120.00340 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99858 * 180.02562 * 21 20 18 24 24 N 1.31609 * 120.00047 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00008 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47039 * 59.99436 * 25 23 21 27 27 H 1.48500 * 109.47370 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47431 * 300.00228 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.09001 * 109.58552 * 294.37777 * 5 3 2 35 35 H 1.09004 * 109.58283 * 54.79884 * 5 3 2 36 36 H 1.09008 * 109.47050 * 299.99697 * 9 7 6 37 37 H 1.08997 * 109.47739 * 59.99737 * 9 7 6 38 38 H 1.09004 * 109.47053 * 299.99874 * 10 9 7 39 39 H 1.09005 * 109.47374 * 59.99350 * 10 9 7 40 40 H 1.08006 * 122.74401 * 359.97438 * 12 11 10 41 41 H 1.08000 * 124.90767 * 179.75023 * 14 13 12 42 42 H 1.09000 * 109.58911 * 173.39097 * 16 6 5 43 43 H 1.09005 * 109.58750 * 293.67208 * 16 6 5 44 44 H 1.08998 * 109.49477 * 65.31125 * 17 16 6 45 45 H 1.08997 * 109.49886 * 185.41613 * 17 16 6 46 46 H 0.97003 * 120.00345 * 335.00027 * 20 18 3 47 47 H 0.97008 * 120.00283 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9820 -0.8416 5 6 1.6365 2.1275 1.3095 6 7 2.2429 3.4651 1.3500 7 6 1.4832 4.5574 1.5648 8 8 0.2869 4.4415 1.7273 9 6 2.1200 5.9226 1.6030 10 6 1.0447 6.9800 1.8608 11 6 1.6816 8.3452 1.8997 12 6 1.8641 9.1577 0.8545 13 7 2.4425 10.3048 1.1483 14 6 2.7673 10.5008 2.3816 15 16 2.3241 9.1490 3.3299 16 6 3.6933 3.5894 1.1513 17 6 4.0739 2.8881 -0.1564 18 6 3.5653 1.4450 -0.1241 19 1 3.8557 0.9365 -1.0435 20 7 4.1496 0.7479 1.0243 21 6 5.3876 0.1722 0.9184 22 1 5.9331 0.2317 -0.0118 23 6 5.9410 -0.4888 2.0064 24 7 5.2761 -0.5617 3.1398 25 14 7.6294 -1.2747 1.8618 26 1 8.6332 -0.2330 1.5262 27 1 7.9911 -1.9121 3.1533 28 1 7.6067 -2.3032 0.7908 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 0.5511 2.2168 1.3558 35 1 1.9931 1.5388 2.1548 36 1 2.8607 5.9558 2.4021 37 1 2.6062 6.1237 0.6484 38 1 0.3037 6.9469 1.0621 39 1 0.5588 6.7788 2.8156 40 1 1.5598 8.8967 -0.1485 41 1 3.2488 11.3904 2.7600 42 1 3.9652 4.6433 1.0932 43 1 4.2178 3.1223 1.9850 44 1 3.6208 3.4143 -0.9966 45 1 5.1582 2.8894 -0.2677 46 1 3.6596 0.6941 1.8597 47 1 5.6629 -1.0233 3.9003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037934541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:31 Heat of formation + Delta-G solvation = 7.479895 kcal Electronic energy + Delta-G solvation = -27311.674021 eV Core-core repulsion = 23620.986032 eV Total energy + Delta-G solvation = -3690.687989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.22761 -39.77862 -37.95086 -34.50202 -34.32496 -33.73252 -31.71855 -29.94529 -29.38398 -28.40090 -26.33421 -24.87106 -23.89499 -23.52594 -23.01697 -20.81719 -20.30099 -19.46968 -18.37935 -18.14556 -17.40741 -16.88327 -15.93754 -15.77580 -15.39434 -14.75813 -14.65674 -14.33971 -14.22133 -14.02015 -13.88732 -13.68182 -13.31741 -13.21260 -12.98184 -12.68460 -12.49774 -12.34791 -12.22901 -11.88782 -11.68549 -11.40810 -11.11883 -11.08193 -10.98083 -10.83001 -10.73524 -10.32471 -10.29035 -10.21719 -9.91486 -9.81332 -9.67190 -9.57486 -9.44608 -9.16150 -8.94835 -8.24808 -7.00899 -5.82000 -3.10528 0.43808 1.09490 1.49698 2.57735 2.78942 3.24801 3.39517 3.44995 3.45632 4.08701 4.43999 4.54678 4.76586 4.83808 4.94477 4.99692 5.13939 5.20774 5.28187 5.32125 5.36946 5.51095 5.53994 5.56560 5.68101 5.75978 5.78523 5.80813 5.82406 5.90090 5.93590 6.07570 6.13554 6.17429 6.33315 6.36769 6.39358 6.54741 6.61070 6.68678 6.74876 6.91970 6.98986 7.42885 7.65154 7.69348 8.35098 8.36493 9.48158 10.04729 10.39820 11.40271 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.002831 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.373913 B = 9886.619697 C =11319.041310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.600 5.600 7 C 0.513 3.487 8 O -0.555 6.555 9 C -0.135 4.135 10 C -0.027 4.027 11 C -0.208 4.208 12 C 0.028 3.972 13 N -0.470 5.470 14 C 0.010 3.990 15 S 0.123 5.877 16 C 0.112 3.888 17 C -0.150 4.150 18 C 0.178 3.822 19 H 0.050 0.950 20 N -0.718 5.718 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.176 0.824 41 H 0.197 0.803 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 16.687 -2.708 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.004 4.004 6 N -0.331 5.331 7 C 0.301 3.699 8 O -0.435 6.435 9 C -0.175 4.175 10 C -0.067 4.067 11 C -0.329 4.329 12 C -0.122 4.122 13 N -0.183 5.183 14 C -0.287 4.287 15 S 0.375 5.625 16 C -0.010 4.010 17 C -0.191 4.191 18 C 0.068 3.932 19 H 0.068 0.932 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.581 5.581 25 Si 0.735 3.265 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.193 0.807 41 H 0.214 0.786 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.662 16.763 -1.981 18.537 hybrid contribution 0.908 -0.592 -0.619 1.248 sum -6.754 16.171 -2.600 17.716 Atomic orbital electron populations 1.21853 0.96815 1.01034 1.01336 1.21417 0.94272 0.95764 1.03363 1.21742 0.97342 0.96133 0.97036 0.91641 1.21690 0.98760 0.81669 0.98276 1.48144 1.08730 1.06618 1.69643 1.20444 0.86873 0.86074 0.76515 1.90663 1.14932 1.86790 1.51088 1.21699 0.99307 0.91900 1.04637 1.19793 0.96431 0.85618 1.04849 1.26100 1.08461 1.03029 0.95325 1.21801 1.00861 0.89014 1.00555 1.66329 1.13067 1.20881 1.18064 1.28363 1.04917 1.03449 0.92015 1.84187 1.53450 1.11671 1.13143 1.21752 0.79123 1.00039 1.00082 1.22524 1.01819 0.99334 0.95429 1.20220 0.89757 0.90614 0.92614 0.93158 1.42469 1.19025 1.64012 1.10577 1.19166 0.93615 1.27121 0.97058 0.91335 1.24695 0.98531 1.01431 0.96030 1.69633 1.38156 1.48012 1.02256 0.86322 0.84361 0.79208 0.76578 1.21365 1.21805 1.21371 0.92785 0.93167 0.93400 0.90498 0.92049 0.89593 0.90789 0.88773 0.88584 0.88768 0.89600 0.80720 0.78585 0.91245 0.89653 0.93327 0.90736 0.78095 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.73 5.19 -26.73 -0.14 -1.87 16 3 C -0.10 -1.62 2.14 -90.50 -0.19 -1.81 16 4 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 5 C 0.12 1.93 5.03 -3.71 -0.02 1.91 16 6 N -0.60 -9.15 2.97 -172.77 -0.51 -9.67 16 7 C 0.51 7.48 7.70 -10.99 -0.08 7.40 16 8 O -0.56 -9.64 15.39 5.56 0.09 -9.55 16 9 C -0.13 -1.45 4.03 -27.89 -0.11 -1.56 16 10 C -0.03 -0.27 5.04 -27.89 -0.14 -0.41 16 11 C -0.21 -1.98 5.85 -35.92 -0.21 -2.19 16 12 C 0.03 0.28 11.25 -19.19 -0.22 0.06 16 13 N -0.47 -5.04 10.54 -15.75 -0.17 -5.20 16 14 C 0.01 0.08 12.23 51.59 0.63 0.71 16 15 S 0.12 1.03 23.22 -107.50 -2.50 -1.47 16 16 C 0.11 1.68 6.08 -3.71 -0.02 1.66 16 17 C -0.15 -2.36 5.78 -26.61 -0.15 -2.51 16 18 C 0.18 3.20 2.53 -67.89 -0.17 3.03 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 N -0.72 -16.04 3.73 -53.38 -0.20 -16.24 16 21 C -0.24 -6.09 9.93 -15.06 -0.15 -6.23 16 22 H 0.07 1.72 7.83 -52.49 -0.41 1.30 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -26.65 13.06 55.49 0.72 -25.93 16 25 Si 0.90 21.48 29.55 -169.99 -5.02 16.45 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 29 H 0.05 0.73 6.70 -51.93 -0.35 0.38 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.42 5.72 -51.93 -0.30 1.12 16 35 H 0.07 1.36 6.64 -51.93 -0.34 1.02 16 36 H 0.09 0.96 7.94 -51.92 -0.41 0.55 16 37 H 0.10 0.92 7.69 -51.93 -0.40 0.52 16 38 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 39 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.18 1.44 8.06 -52.48 -0.42 1.01 16 41 H 0.20 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.07 0.84 5.93 -51.93 -0.31 0.53 16 43 H 0.09 1.53 7.75 -51.93 -0.40 1.13 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.38 9.23 5.94 -40.82 -0.24 8.99 16 47 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 385.13 15.07 5.80 5.80 Total: -1.00 -30.13 385.13 -9.85 -39.97 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -7.34 Total: 9.70 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -0.72 Total: -3.88 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.15 Total: -57.03 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.50 Total: -1.47 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.13 -9.85 -39.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037934541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.451 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds