Wall clock time and date at job start Tue Mar 31 2020 19:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47336 * 2 1 4 4 H 1.09003 * 109.51797 * 305.08359 * 3 2 1 5 5 C 1.53196 * 109.49836 * 65.15938 * 3 2 1 6 6 N 1.46918 * 108.77417 * 174.58985 * 5 3 2 7 7 C 1.34785 * 120.63350 * 126.37351 * 6 5 3 8 8 O 1.21279 * 119.99468 * 359.97438 * 7 6 5 9 9 C 1.50690 * 120.00391 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47301 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47139 * 179.97438 * 10 9 7 12 12 C 1.33645 * 126.03721 * 89.72116 * 11 10 9 13 13 N 1.31775 * 114.50054 * 179.78977 * 12 11 10 14 14 C 1.29029 * 117.12633 * 0.51679 * 13 12 11 15 15 S 1.70973 * 110.16598 * 359.71824 * 14 13 12 16 16 C 1.46930 * 118.74024 * 306.39214 * 6 5 3 17 17 C 1.53188 * 108.77276 * 53.60944 * 16 6 5 18 18 C 1.53033 * 109.31371 * 305.36363 * 17 16 6 19 19 H 1.08999 * 109.45340 * 301.35215 * 18 17 16 20 20 N 1.46500 * 109.46114 * 181.38608 * 18 17 16 21 21 C 1.36943 * 119.99878 * 84.93157 * 20 18 17 22 22 H 1.07996 * 119.99698 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99902 * 179.97438 * 21 20 18 24 24 N 1.31620 * 120.00319 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00011 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 59.99967 * 25 23 21 27 27 H 1.48503 * 109.47261 * 300.00148 * 25 23 21 28 28 H 1.48500 * 109.47454 * 180.02562 * 25 23 21 29 29 H 1.09006 * 109.47361 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47283 * 299.99792 * 1 2 3 31 31 H 1.08998 * 109.47490 * 60.00043 * 1 2 3 32 32 H 1.08992 * 109.47198 * 239.99754 * 2 1 3 33 33 H 1.09007 * 109.47012 * 119.99688 * 2 1 3 34 34 H 1.08995 * 109.58629 * 294.38032 * 5 3 2 35 35 H 1.08998 * 109.58443 * 54.80208 * 5 3 2 36 36 H 1.08998 * 109.47208 * 300.00258 * 9 7 6 37 37 H 1.09006 * 109.46933 * 59.99564 * 9 7 6 38 38 H 1.08998 * 109.47064 * 300.00322 * 10 9 7 39 39 H 1.08998 * 109.46687 * 60.00593 * 10 9 7 40 40 H 1.08001 * 122.74458 * 359.97403 * 12 11 10 41 41 H 1.08000 * 124.91555 * 179.75344 * 14 13 12 42 42 H 1.09004 * 109.58466 * 173.40097 * 16 6 5 43 43 H 1.09001 * 109.58286 * 293.67950 * 16 6 5 44 44 H 1.09000 * 109.49274 * 185.41340 * 17 16 6 45 45 H 1.08993 * 109.49619 * 65.32229 * 17 16 6 46 46 H 0.97000 * 120.00415 * 264.93105 * 20 18 17 47 47 H 0.97001 * 119.99542 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 -0.8407 5 6 1.6385 2.1268 1.3105 6 7 2.2451 3.4643 1.3506 7 6 1.4856 4.5566 1.5672 8 8 0.2895 4.4407 1.7308 9 6 2.1227 5.9217 1.6061 10 6 1.0476 6.9791 1.8648 11 6 1.6848 8.3441 1.9043 12 6 1.8671 9.1572 0.8595 13 7 2.4457 10.3040 1.1539 14 6 2.7709 10.4993 2.3872 15 16 2.3278 9.1470 3.3349 16 6 3.6952 3.5888 1.1497 17 6 4.0736 2.8881 -0.1589 18 6 3.5652 1.4451 -0.1257 19 1 4.0008 0.9263 0.7282 20 7 3.9541 0.7620 -1.3620 21 6 5.1923 0.1863 -1.4658 22 1 5.8818 0.2354 -0.6361 23 6 5.5606 -0.4614 -2.6370 24 7 4.7199 -0.5217 -3.6480 25 14 7.2492 -1.2473 -2.7783 26 1 7.4001 -2.2884 -1.7301 27 1 8.2953 -0.2087 -2.5986 28 1 7.3952 -1.8693 -4.1189 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5533 2.2161 1.3585 35 1 1.9965 1.5378 2.1549 36 1 2.8641 5.9540 2.4044 37 1 2.6080 6.1235 0.6511 38 1 0.3064 6.9466 1.0662 39 1 0.5620 6.7774 2.8196 40 1 1.5624 8.8970 -0.1434 41 1 3.2527 11.3886 2.7660 42 1 3.9670 4.6428 1.0918 43 1 4.2208 3.1212 1.9823 44 1 5.1577 2.8894 -0.2719 45 1 3.6192 3.4148 -0.9981 46 1 3.3346 0.7175 -2.1071 47 1 3.8429 -0.1139 -3.5744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037934547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:34 Heat of formation + Delta-G solvation = 5.987137 kcal Electronic energy + Delta-G solvation = -26965.683697 eV Core-core repulsion = 23274.930977 eV Total energy + Delta-G solvation = -3690.752720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.38127 -39.86976 -38.02327 -34.92562 -34.54485 -33.93364 -31.86676 -30.08052 -29.42619 -28.49104 -26.34202 -24.86247 -23.93425 -23.41417 -22.67454 -20.98454 -20.38844 -19.91182 -18.91735 -18.43154 -17.32471 -17.18495 -16.12593 -15.96631 -15.52941 -15.01143 -14.77938 -14.37120 -14.24704 -14.07280 -13.97752 -13.64796 -13.50969 -13.32955 -13.31105 -12.82499 -12.71066 -12.53237 -12.18736 -11.98431 -11.83512 -11.71869 -11.40882 -11.20885 -10.96276 -10.77819 -10.63375 -10.35894 -10.28624 -10.03843 -9.99364 -9.90415 -9.83569 -9.56403 -9.25245 -9.20262 -8.94066 -8.56226 -7.07552 -6.13378 -3.13839 0.35234 1.00546 1.40325 2.50303 2.57460 3.00071 3.48508 3.51419 3.69209 4.00595 4.27754 4.61915 4.63067 4.70652 4.79390 4.92037 4.96635 5.07850 5.12791 5.15974 5.23090 5.27376 5.37843 5.48064 5.55178 5.58368 5.61779 5.64951 5.71349 5.79241 5.84484 5.91367 6.01901 6.04227 6.14431 6.24134 6.28429 6.34013 6.44833 6.55387 6.70916 6.81564 6.93643 7.35855 7.41633 7.76231 8.12742 8.71827 9.18283 10.04759 10.20017 11.34655 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.002502 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.803137 B =11188.988617 C =12557.424264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.068 0.932 5 C 0.119 3.881 6 N -0.606 5.606 7 C 0.515 3.485 8 O -0.550 6.550 9 C -0.136 4.136 10 C -0.027 4.027 11 C -0.210 4.210 12 C 0.031 3.969 13 N -0.469 5.469 14 C 0.013 3.987 15 S 0.118 5.882 16 C 0.106 3.894 17 C -0.151 4.151 18 C 0.189 3.811 19 H 0.049 0.951 20 N -0.731 5.731 21 C -0.330 4.330 22 H 0.063 0.937 23 C -0.044 4.044 24 N -0.943 5.943 25 Si 1.078 2.922 26 H -0.296 1.296 27 H -0.296 1.296 28 H -0.285 1.285 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.177 0.823 41 H 0.198 0.802 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.367 0.633 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 16.869 15.403 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.086 0.914 5 C -0.003 4.003 6 N -0.338 5.338 7 C 0.303 3.697 8 O -0.428 6.428 9 C -0.176 4.176 10 C -0.067 4.067 11 C -0.331 4.331 12 C -0.119 4.119 13 N -0.182 5.182 14 C -0.285 4.285 15 S 0.371 5.629 16 C -0.017 4.017 17 C -0.193 4.193 18 C 0.079 3.921 19 H 0.067 0.933 20 N -0.373 5.373 21 C -0.461 4.461 22 H 0.081 0.919 23 C -0.242 4.242 24 N -0.588 5.588 25 Si 0.909 3.091 26 H -0.223 1.223 27 H -0.223 1.223 28 H -0.211 1.211 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.194 0.806 41 H 0.215 0.785 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.077 0.923 46 H 0.200 0.800 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.051 16.148 15.304 22.814 hybrid contribution -1.117 0.815 -0.086 1.385 sum -6.168 16.963 15.218 23.609 Atomic orbital electron populations 1.21844 0.96638 1.01148 1.01371 1.21436 0.94502 0.95662 1.03313 1.21800 0.97629 0.96258 0.96866 0.91363 1.21735 0.99471 0.81500 0.97639 1.48187 1.08605 1.06814 1.70201 1.20498 0.86890 0.86065 0.76227 1.90679 1.14855 1.86704 1.50573 1.21716 0.99378 0.91762 1.04771 1.19786 0.96394 0.85642 1.04860 1.26072 1.08703 1.03015 0.95310 1.21838 1.00550 0.88922 1.00637 1.66327 1.12991 1.20883 1.18012 1.28384 1.04775 1.03372 0.91934 1.84112 1.53659 1.11923 1.13254 1.21888 0.79388 1.01230 0.99216 1.22662 1.02310 0.99203 0.95087 1.20110 0.90663 0.90461 0.90877 0.93346 1.42417 1.16477 1.65688 1.12728 1.19997 0.92419 1.32094 1.01587 0.91851 1.25724 1.05804 1.00225 0.92417 1.70887 1.08296 1.47535 1.32100 0.83271 0.74203 0.75866 0.75793 1.22302 1.22324 1.21082 0.93066 0.93090 0.93013 0.90255 0.92336 0.89068 0.91680 0.88785 0.88346 0.88670 0.89614 0.80628 0.78528 0.90415 0.91359 0.90494 0.92321 0.79978 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.67 37.16 0.36 -1.70 16 2 C -0.11 -1.76 5.31 -26.73 -0.14 -1.90 16 3 C -0.11 -1.67 1.92 -90.50 -0.17 -1.85 16 4 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 5 C 0.12 1.67 5.33 -3.71 -0.02 1.65 16 6 N -0.61 -7.93 2.97 -172.77 -0.51 -8.45 16 7 C 0.52 6.65 7.70 -10.99 -0.08 6.57 16 8 O -0.55 -8.74 15.39 5.56 0.09 -8.65 16 9 C -0.14 -1.27 4.03 -27.89 -0.11 -1.38 16 10 C -0.03 -0.24 5.04 -27.88 -0.14 -0.38 16 11 C -0.21 -1.82 5.85 -35.92 -0.21 -2.03 16 12 C 0.03 0.29 11.25 -19.19 -0.22 0.08 16 13 N -0.47 -4.82 10.54 -15.75 -0.17 -4.98 16 14 C 0.01 0.10 12.23 51.59 0.63 0.73 16 15 S 0.12 0.86 23.22 -107.50 -2.50 -1.64 16 16 C 0.11 1.28 6.34 -3.71 -0.02 1.26 16 17 C -0.15 -2.43 5.66 -26.62 -0.15 -2.58 16 18 C 0.19 3.47 2.19 -67.89 -0.15 3.32 16 19 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 20 N -0.73 -17.11 4.33 -53.39 -0.23 -17.34 16 21 C -0.33 -8.79 9.93 -15.06 -0.15 -8.94 16 22 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 23 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 24 N -0.94 -28.45 13.70 55.49 0.76 -27.69 16 25 Si 1.08 25.28 29.92 -169.99 -5.09 20.19 16 26 H -0.30 -6.64 7.11 56.52 0.40 -6.23 16 27 H -0.30 -6.63 7.11 56.52 0.40 -6.22 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.50 7.22 -51.93 -0.37 1.12 16 33 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.09 1.33 5.73 -51.93 -0.30 1.04 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.75 7.94 -51.93 -0.41 0.33 16 37 H 0.10 0.86 7.69 -51.93 -0.40 0.46 16 38 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.20 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.37 9.06 6.34 -40.82 -0.26 8.80 16 47 H 0.26 7.58 6.77 -40.82 -0.28 7.30 16 LS Contribution 387.03 15.07 5.83 5.83 Total: -1.00 -32.40 387.03 -9.86 -42.27 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.37 Total: 8.95 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.68 Total: -8.48 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.15 Total: -58.46 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.09 Total: 20.19 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.50 Total: -1.64 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.40 -9.86 -42.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037934547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.253 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds