Wall clock time and date at job start Tue Mar 31 2020 19:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47336 * 2 1 4 4 H 1.09003 * 109.51797 * 305.08359 * 3 2 1 5 5 C 1.53196 * 109.49836 * 65.15938 * 3 2 1 6 6 N 1.46918 * 108.77417 * 174.58985 * 5 3 2 7 7 C 1.34785 * 120.63350 * 126.37351 * 6 5 3 8 8 O 1.21279 * 119.99468 * 359.97438 * 7 6 5 9 9 C 1.50690 * 120.00391 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47301 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47139 * 179.97438 * 10 9 7 12 12 C 1.33645 * 126.03721 * 89.72116 * 11 10 9 13 13 N 1.31775 * 114.50054 * 179.78977 * 12 11 10 14 14 C 1.29029 * 117.12633 * 0.51679 * 13 12 11 15 15 S 1.70973 * 110.16598 * 359.71824 * 14 13 12 16 16 C 1.46930 * 118.74024 * 306.39214 * 6 5 3 17 17 C 1.53188 * 108.77276 * 53.60944 * 16 6 5 18 18 C 1.53033 * 109.31371 * 305.36363 * 17 16 6 19 19 H 1.08999 * 109.45340 * 301.35215 * 18 17 16 20 20 N 1.46500 * 109.46114 * 181.38608 * 18 17 16 21 21 C 1.36943 * 119.99878 * 84.93157 * 20 18 17 22 22 H 1.07996 * 119.99698 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99902 * 179.97438 * 21 20 18 24 24 N 1.31620 * 120.00319 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00011 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 59.99967 * 25 23 21 27 27 H 1.48503 * 109.47261 * 300.00148 * 25 23 21 28 28 H 1.48500 * 109.47454 * 180.02562 * 25 23 21 29 29 H 1.09006 * 109.47361 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47283 * 299.99792 * 1 2 3 31 31 H 1.08998 * 109.47490 * 60.00043 * 1 2 3 32 32 H 1.08992 * 109.47198 * 239.99754 * 2 1 3 33 33 H 1.09007 * 109.47012 * 119.99688 * 2 1 3 34 34 H 1.08995 * 109.58629 * 294.38032 * 5 3 2 35 35 H 1.08998 * 109.58443 * 54.80208 * 5 3 2 36 36 H 1.08998 * 109.47208 * 300.00258 * 9 7 6 37 37 H 1.09006 * 109.46933 * 59.99564 * 9 7 6 38 38 H 1.08998 * 109.47064 * 300.00322 * 10 9 7 39 39 H 1.08998 * 109.46687 * 60.00593 * 10 9 7 40 40 H 1.08001 * 122.74458 * 359.97403 * 12 11 10 41 41 H 1.08000 * 124.91555 * 179.75344 * 14 13 12 42 42 H 1.09004 * 109.58466 * 173.40097 * 16 6 5 43 43 H 1.09001 * 109.58286 * 293.67950 * 16 6 5 44 44 H 1.09000 * 109.49274 * 185.41340 * 17 16 6 45 45 H 1.08993 * 109.49619 * 65.32229 * 17 16 6 46 46 H 0.97000 * 120.00415 * 264.93105 * 20 18 17 47 47 H 0.97001 * 119.99542 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 -0.8407 5 6 1.6385 2.1268 1.3105 6 7 2.2451 3.4643 1.3506 7 6 1.4856 4.5566 1.5672 8 8 0.2895 4.4407 1.7308 9 6 2.1227 5.9217 1.6061 10 6 1.0476 6.9791 1.8648 11 6 1.6848 8.3441 1.9043 12 6 1.8671 9.1572 0.8595 13 7 2.4457 10.3040 1.1539 14 6 2.7709 10.4993 2.3872 15 16 2.3278 9.1470 3.3349 16 6 3.6952 3.5888 1.1497 17 6 4.0736 2.8881 -0.1589 18 6 3.5652 1.4451 -0.1257 19 1 4.0008 0.9263 0.7282 20 7 3.9541 0.7620 -1.3620 21 6 5.1923 0.1863 -1.4658 22 1 5.8818 0.2354 -0.6361 23 6 5.5606 -0.4614 -2.6370 24 7 4.7199 -0.5217 -3.6480 25 14 7.2492 -1.2473 -2.7783 26 1 7.4001 -2.2884 -1.7301 27 1 8.2953 -0.2087 -2.5986 28 1 7.3952 -1.8693 -4.1189 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5533 2.2161 1.3585 35 1 1.9965 1.5378 2.1549 36 1 2.8641 5.9540 2.4044 37 1 2.6080 6.1235 0.6511 38 1 0.3064 6.9466 1.0662 39 1 0.5620 6.7774 2.8196 40 1 1.5624 8.8970 -0.1434 41 1 3.2527 11.3886 2.7660 42 1 3.9670 4.6428 1.0918 43 1 4.2208 3.1212 1.9823 44 1 5.1577 2.8894 -0.2719 45 1 3.6192 3.4148 -0.9981 46 1 3.3346 0.7175 -2.1071 47 1 3.8429 -0.1139 -3.5744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037934547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:33 Heat of formation + Delta-G solvation = -13.378533 kcal Electronic energy + Delta-G solvation = -26966.523455 eV Core-core repulsion = 23274.930977 eV Total energy + Delta-G solvation = -3691.592478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.44748 -40.55935 -39.29979 -36.43033 -35.59105 -35.10075 -33.51179 -30.95502 -30.92469 -29.66284 -27.23363 -26.16385 -25.22085 -24.69713 -23.84926 -22.32558 -21.26520 -20.97644 -20.02182 -19.28698 -19.08986 -18.17524 -17.17983 -16.87864 -16.67493 -16.34168 -15.95520 -15.53745 -15.37981 -15.21891 -14.99098 -14.89251 -14.78280 -14.59813 -14.41880 -13.82588 -13.69186 -13.49421 -13.35410 -13.20684 -12.91562 -12.74850 -12.65873 -12.55524 -12.43254 -12.12515 -11.90672 -11.87371 -11.71148 -11.63405 -11.45987 -11.05390 -10.98744 -10.77279 -10.59379 -10.19780 -9.87370 -9.70174 -9.06532 -8.33933 -5.27584 -0.24866 0.42975 0.80820 1.56822 1.59257 1.68623 1.83308 1.84405 2.00617 2.73347 3.33193 3.43871 3.53654 3.65948 3.69282 3.89330 3.91535 3.98508 4.01644 4.11351 4.21861 4.25856 4.36247 4.38817 4.39331 4.46801 4.56173 4.57374 4.66485 4.73850 4.76699 4.83709 4.93657 4.96315 4.97980 5.03562 5.08889 5.20554 5.21230 5.29442 5.38763 5.46215 5.58924 5.64533 6.38392 6.53079 6.75544 7.10549 7.13142 8.03377 8.16703 9.17705 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.002502 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.803137 B =11188.988617 C =12557.424264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.093 4.093 4 H 0.051 0.949 5 C 0.126 3.874 6 N -0.609 5.609 7 C 0.514 3.486 8 O -0.581 6.581 9 C -0.128 4.128 10 C -0.019 4.019 11 C -0.220 4.220 12 C 0.019 3.981 13 N -0.505 5.505 14 C 0.013 3.987 15 S 0.153 5.847 16 C 0.115 3.885 17 C -0.143 4.143 18 C 0.184 3.816 19 H 0.044 0.956 20 N -0.743 5.743 21 C -0.318 4.318 22 H 0.068 0.932 23 C -0.107 4.107 24 N -0.980 5.980 25 Si 1.124 2.876 26 H -0.279 1.279 27 H -0.277 1.277 28 H -0.298 1.298 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.179 0.821 41 H 0.226 0.774 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.356 0.644 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.958 18.322 18.023 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.113 4.113 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.340 5.340 7 C 0.304 3.696 8 O -0.462 6.462 9 C -0.168 4.168 10 C -0.060 4.060 11 C -0.342 4.342 12 C -0.131 4.131 13 N -0.219 5.219 14 C -0.283 4.283 15 S 0.406 5.594 16 C -0.007 4.007 17 C -0.184 4.184 18 C 0.075 3.925 19 H 0.062 0.938 20 N -0.384 5.384 21 C -0.450 4.450 22 H 0.086 0.914 23 C -0.298 4.298 24 N -0.628 5.628 25 Si 0.949 3.051 26 H -0.205 1.205 27 H -0.203 1.203 28 H -0.225 1.225 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.196 0.804 41 H 0.242 0.758 42 H 0.128 0.872 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.188 0.812 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.164 17.640 17.992 25.539 hybrid contribution -1.440 0.417 -0.809 1.704 sum -5.605 18.057 17.183 25.548 Atomic orbital electron populations 1.21774 0.94644 1.01996 1.01824 1.21352 0.96247 0.95270 1.01660 1.21641 0.95637 0.96397 0.97646 0.93068 1.21591 0.99416 0.82226 0.96489 1.48254 1.09045 1.06566 1.70178 1.21096 0.86472 0.86992 0.75074 1.90669 1.16372 1.87215 1.51925 1.21732 0.99653 0.89325 1.06140 1.19655 0.96123 0.85851 1.04346 1.26017 1.09183 1.02862 0.96100 1.21978 1.00820 0.89124 1.01214 1.66363 1.14497 1.21557 1.19452 1.28926 1.03614 1.04382 0.91407 1.83982 1.52622 1.10989 1.11793 1.21896 0.78809 1.02866 0.97178 1.22454 1.01191 0.97548 0.97189 1.20358 0.92367 0.91324 0.88426 0.93776 1.42612 1.15442 1.66312 1.14062 1.20322 0.93275 1.30267 1.01125 0.91379 1.27052 1.08564 1.01610 0.92599 1.70995 1.08473 1.49862 1.33497 0.82668 0.71121 0.75862 0.75417 1.20501 1.20338 1.22476 0.92070 0.91554 0.93567 0.93989 0.91774 0.89397 0.90291 0.86490 0.87336 0.89646 0.89924 0.80399 0.75764 0.87181 0.89599 0.91735 0.93676 0.81226 0.94726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.67 71.98 0.70 -3.15 16 2 C -0.11 -3.42 5.31 30.59 0.16 -3.26 16 3 C -0.09 -2.95 1.92 -10.72 -0.02 -2.97 16 4 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 5 C 0.13 3.32 5.33 86.37 0.46 3.78 16 6 N -0.61 -14.58 2.97 -818.92 -2.43 -17.01 16 7 C 0.51 12.19 7.70 87.65 0.67 12.86 16 8 O -0.58 -17.73 15.39 -3.03 -0.05 -17.77 16 9 C -0.13 -2.04 4.03 29.84 0.12 -1.92 16 10 C -0.02 -0.32 5.04 29.85 0.15 -0.16 16 11 C -0.22 -3.41 5.85 24.64 0.14 -3.26 16 12 C 0.02 0.34 11.25 83.66 0.94 1.28 16 13 N -0.50 -9.63 10.54 -203.75 -2.15 -11.78 16 14 C 0.01 0.18 12.23 130.65 1.60 1.77 16 15 S 0.15 1.81 23.22 -56.49 -1.31 0.50 16 16 C 0.12 2.45 6.34 86.36 0.55 3.00 16 17 C -0.14 -4.43 5.66 30.67 0.17 -4.26 16 18 C 0.18 6.71 2.19 45.01 0.10 6.81 16 19 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 20 N -0.74 -35.65 4.33 -322.83 -1.40 -37.04 16 21 C -0.32 -17.10 9.93 84.03 0.83 -16.27 16 22 H 0.07 3.54 7.83 -2.91 -0.02 3.51 16 23 C -0.11 -6.10 5.50 84.86 0.47 -5.64 16 24 N -0.98 -60.95 13.70 21.65 0.30 -60.65 16 25 Si 1.12 51.11 29.92 68.60 2.05 53.17 16 26 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 28 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 29 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.07 1.56 6.70 -2.39 -0.02 1.55 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.65 7.22 -2.39 -0.02 1.64 16 33 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.09 2.44 5.73 -2.39 -0.01 2.43 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.12 1.37 7.94 -2.39 -0.02 1.35 16 37 H 0.11 1.57 7.69 -2.38 -0.02 1.55 16 38 H 0.09 1.54 8.10 -2.39 -0.02 1.52 16 39 H 0.08 1.39 8.10 -2.39 -0.02 1.37 16 40 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.23 1.33 8.06 -2.91 -0.02 1.30 16 42 H 0.11 1.70 5.93 -2.38 -0.01 1.68 16 43 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.36 18.46 6.34 -92.71 -0.59 17.87 16 47 H 0.24 15.09 6.77 -92.71 -0.63 14.47 16 Total: -1.00 -71.77 387.03 2.58 -69.19 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: 0.52 Total: 32.79 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 7.05 Total: -11.39 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -5.68 Total: -126.49 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.05 Total: -17.77 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.17 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.31 Total: 0.50 kcal Total: -71.77 2.58 -69.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037934547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.815 kcal (2) G-P(sol) polarization free energy of solvation -71.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds