Wall clock time and date at job start Tue Mar 31 2020 19:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.09002 * 109.49678 * 55.00837 * 3 2 1 5 5 C 1.53186 * 109.50285 * 294.93678 * 3 2 1 6 6 N 1.46929 * 108.77685 * 185.41838 * 5 3 2 7 7 C 1.34778 * 120.62853 * 233.62926 * 6 5 3 8 8 O 1.21287 * 120.00089 * 359.97438 * 7 6 5 9 9 C 1.50691 * 120.00161 * 179.97438 * 7 6 5 10 10 C 1.53003 * 109.47448 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.47271 * 180.02562 * 10 9 7 12 12 C 1.33636 * 126.03510 * 90.00142 * 11 10 9 13 13 N 1.31784 * 114.49782 * 180.02562 * 12 11 10 14 14 C 1.29018 * 117.12434 * 359.97438 * 13 12 11 15 15 S 1.70976 * 110.16872 * 359.72806 * 14 13 12 16 16 C 1.46920 * 118.74048 * 53.60566 * 6 5 3 17 17 C 1.53186 * 108.77907 * 306.39358 * 16 6 5 18 18 C 1.53041 * 109.49368 * 175.06300 * 3 2 1 19 19 H 1.09000 * 109.46547 * 301.33712 * 18 3 2 20 20 N 1.46500 * 109.46085 * 61.30208 * 18 3 2 21 21 C 1.36936 * 120.00101 * 205.00127 * 20 18 3 22 22 H 1.07999 * 120.00267 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99733 * 179.97438 * 21 20 18 24 24 N 1.31628 * 119.99624 * 180.02562 * 23 21 20 25 25 Si 1.86792 * 120.00361 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47222 * 90.00189 * 25 23 21 27 27 H 1.48504 * 109.47062 * 210.00474 * 25 23 21 28 28 H 1.48502 * 109.47249 * 330.00117 * 25 23 21 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 33 33 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 34 34 H 1.09004 * 109.58545 * 305.20417 * 5 3 2 35 35 H 1.08996 * 109.58578 * 65.48291 * 5 3 2 36 36 H 1.08998 * 109.47313 * 300.00215 * 9 7 6 37 37 H 1.09004 * 109.47082 * 60.00159 * 9 7 6 38 38 H 1.08998 * 109.47151 * 300.00451 * 10 9 7 39 39 H 1.09004 * 109.46737 * 60.00085 * 10 9 7 40 40 H 1.08007 * 122.75268 * 359.97438 * 12 11 10 41 41 H 1.07998 * 124.91449 * 180.02562 * 14 13 12 42 42 H 1.09003 * 109.58422 * 66.18035 * 16 6 5 43 43 H 1.09004 * 109.58609 * 186.60456 * 16 6 5 44 44 H 1.09001 * 109.50276 * 174.58560 * 17 16 6 45 45 H 1.09000 * 109.49662 * 294.65592 * 17 16 6 46 46 H 0.97004 * 120.00089 * 24.99670 * 20 18 3 47 47 H 0.96998 * 119.99437 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6056 1.9819 0.8418 5 6 1.6364 2.1276 -1.3094 6 7 2.2429 3.4652 -1.3497 7 6 1.4831 4.5575 -1.5644 8 8 0.2867 4.4417 -1.7270 9 6 2.1198 5.9228 -1.6025 10 6 1.0445 6.9802 -1.8603 11 6 1.6814 8.3454 -1.8990 12 6 2.1683 8.9553 -2.9838 13 7 2.6768 10.1498 -2.7571 14 6 2.6455 10.5815 -1.5417 15 16 1.9086 9.4226 -0.5233 16 6 3.6933 3.5896 -1.1511 17 6 4.0739 2.8882 0.1564 18 6 3.5653 1.4450 0.1242 19 1 3.8557 0.9366 1.0435 20 7 4.1496 0.7481 -1.0243 21 6 5.3876 0.1723 -0.9185 22 1 5.9333 0.2324 0.0115 23 6 5.9409 -0.4885 -2.0066 24 7 7.1307 -1.0424 -1.9047 25 14 4.9967 -0.5930 -3.6150 26 1 5.3383 0.5747 -4.4663 27 1 5.3626 -1.8460 -4.3232 28 1 3.5385 -0.5911 -3.3339 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.9930 1.5390 -2.1547 35 1 0.5509 2.2146 -1.3567 36 1 2.6060 6.1237 -0.6478 37 1 2.8605 5.9561 -2.4015 38 1 0.5587 6.7791 -2.8151 39 1 0.3035 6.9470 -1.0615 40 1 2.1476 8.5058 -3.9656 41 1 3.0251 11.5386 -1.2158 42 1 4.2176 3.1202 -1.9836 43 1 3.9651 4.6436 -1.0930 44 1 5.1582 2.8894 0.2678 45 1 3.6213 3.4146 0.9968 46 1 3.6596 0.6944 -1.8598 47 1 7.5175 -1.5038 -2.6652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037934553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:36 Heat of formation + Delta-G solvation = 11.650687 kcal Electronic energy + Delta-G solvation = -27429.295596 eV Core-core repulsion = 23738.788466 eV Total energy + Delta-G solvation = -3690.507130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.36105 -39.84863 -38.12076 -34.64061 -34.42703 -33.85535 -31.80833 -30.04999 -29.84837 -28.66676 -26.44204 -25.02553 -24.03143 -23.32328 -23.00495 -20.90749 -20.35785 -19.59650 -18.41541 -18.27393 -17.92009 -17.00103 -16.03019 -15.95540 -15.41373 -14.93965 -14.67287 -14.48615 -14.30927 -14.17191 -13.91961 -13.70527 -13.47115 -13.34340 -13.01509 -12.85006 -12.53214 -12.49031 -12.37455 -11.97722 -11.87114 -11.62354 -11.31418 -11.16630 -11.14137 -10.98478 -10.86768 -10.42625 -10.37506 -10.25109 -9.96096 -9.87238 -9.78044 -9.60025 -9.51671 -9.21504 -8.99481 -8.41382 -7.33055 -5.83225 -3.18676 0.38924 1.04332 1.44175 2.53444 2.66152 3.10169 3.30412 3.33091 3.40424 4.04124 4.34840 4.52272 4.68948 4.75067 4.84488 4.95055 5.01020 5.07739 5.15508 5.17807 5.27453 5.30886 5.41543 5.49054 5.52697 5.60028 5.62546 5.69275 5.74097 5.75811 5.85338 5.87971 5.99014 6.02441 6.15491 6.23316 6.27824 6.40606 6.47161 6.51897 6.62670 6.72530 6.84850 7.38887 7.53796 7.92968 8.21579 8.35941 9.13968 9.86589 10.06286 11.35169 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.002931 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.271296 B = 9549.782738 C =10516.999856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.106 4.106 4 H 0.071 0.929 5 C 0.117 3.883 6 N -0.603 5.603 7 C 0.514 3.486 8 O -0.553 6.553 9 C -0.135 4.135 10 C -0.026 4.026 11 C -0.209 4.209 12 C 0.030 3.970 13 N -0.470 5.470 14 C 0.012 3.988 15 S 0.121 5.879 16 C 0.110 3.890 17 C -0.150 4.150 18 C 0.184 3.816 19 H 0.060 0.940 20 N -0.744 5.744 21 C -0.241 4.241 22 H 0.091 0.909 23 C 0.007 3.993 24 N -0.933 5.933 25 Si 0.878 3.122 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.176 0.824 41 H 0.198 0.802 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.052 0.948 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.154 18.397 3.992 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.006 4.006 6 N -0.335 5.335 7 C 0.302 3.698 8 O -0.432 6.432 9 C -0.176 4.176 10 C -0.067 4.067 11 C -0.330 4.330 12 C -0.121 4.121 13 N -0.183 5.183 14 C -0.285 4.285 15 S 0.373 5.627 16 C -0.012 4.012 17 C -0.191 4.191 18 C 0.075 3.925 19 H 0.078 0.922 20 N -0.387 5.387 21 C -0.371 4.371 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.580 5.580 25 Si 0.708 3.292 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.193 0.807 41 H 0.215 0.785 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.194 0.806 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.510 18.586 4.625 22.876 hybrid contribution -0.226 -0.457 -2.063 2.125 sum -12.736 18.129 2.561 22.303 Atomic orbital electron populations 1.21858 0.96615 1.01183 1.01452 1.21437 0.94495 0.95707 1.03331 1.21794 0.97408 0.96215 0.97183 0.91025 1.21675 0.99116 0.81778 0.97988 1.48177 1.08806 1.06559 1.69976 1.20483 0.86864 0.86084 0.76350 1.90671 1.14902 1.86780 1.50862 1.21710 0.99423 0.91759 1.04707 1.19788 0.96303 0.85575 1.04991 1.26078 1.08873 1.02625 0.95458 1.21820 0.99503 0.90528 1.00211 1.66323 1.17994 1.13797 1.20162 1.28372 1.03950 1.04690 0.91535 1.84133 1.54504 1.10330 1.13763 1.21779 0.78926 1.00464 1.00017 1.22500 1.02354 0.98797 0.95418 1.20189 0.89413 0.90698 0.92234 0.92198 1.42844 1.19609 1.65831 1.10444 1.19049 0.91840 1.26954 0.99233 0.89168 1.24639 0.96448 1.00252 0.97546 1.69692 1.16293 1.41207 1.30853 0.86670 0.79605 0.77498 0.85408 1.21156 1.21718 1.20400 0.92876 0.93041 0.93124 0.91521 0.91106 0.91676 0.89238 0.88673 0.88466 0.88757 0.89622 0.80685 0.78548 0.90153 0.90775 0.90151 0.92911 0.80600 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.67 37.16 0.36 -1.55 16 2 C -0.11 -1.63 5.19 -26.73 -0.14 -1.77 16 3 C -0.11 -1.56 2.14 -90.50 -0.19 -1.76 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 5 C 0.12 1.77 5.03 -3.71 -0.02 1.75 16 6 N -0.60 -8.57 2.97 -172.78 -0.51 -9.08 16 7 C 0.51 7.00 7.70 -10.99 -0.08 6.91 16 8 O -0.55 -9.06 15.40 5.55 0.09 -8.98 16 9 C -0.14 -1.35 4.03 -27.89 -0.11 -1.46 16 10 C -0.03 -0.25 5.04 -27.88 -0.14 -0.39 16 11 C -0.21 -1.88 5.85 -35.92 -0.21 -2.09 16 12 C 0.03 0.29 11.25 -19.18 -0.22 0.07 16 13 N -0.47 -4.93 10.54 -15.75 -0.17 -5.10 16 14 C 0.01 0.10 12.23 51.58 0.63 0.73 16 15 S 0.12 0.92 23.22 -107.50 -2.50 -1.57 16 16 C 0.11 1.53 6.08 -3.72 -0.02 1.51 16 17 C -0.15 -2.23 5.78 -26.61 -0.15 -2.38 16 18 C 0.18 3.15 2.53 -67.89 -0.17 2.98 16 19 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 20 N -0.74 -15.68 3.52 -53.38 -0.19 -15.87 16 21 C -0.24 -6.25 10.41 -15.06 -0.16 -6.40 16 22 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 23 C 0.01 0.20 5.50 -17.42 -0.10 0.10 16 24 N -0.93 -28.20 13.97 55.49 0.78 -27.42 16 25 Si 0.88 21.25 27.73 -169.99 -4.71 16.54 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 29 H 0.05 0.66 6.70 -51.93 -0.35 0.31 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 34 H 0.07 1.09 6.64 -51.93 -0.34 0.74 16 35 H 0.09 1.37 5.73 -51.93 -0.30 1.07 16 36 H 0.09 0.85 7.69 -51.93 -0.40 0.45 16 37 H 0.10 0.89 7.94 -51.93 -0.41 0.48 16 38 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.18 1.43 8.06 -52.48 -0.42 1.01 16 41 H 0.20 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.08 1.31 7.74 -51.93 -0.40 0.91 16 43 H 0.07 0.82 5.93 -51.93 -0.31 0.51 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.36 7.68 3.81 -40.82 -0.16 7.52 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -31.50 382.01 -9.49 -40.99 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.30 Total: 8.50 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.72 Total: -3.75 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.09 Total: -57.47 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.54 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.50 Total: -1.57 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.50 -9.49 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037934553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.636 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds