Wall clock time and date at job start Tue Mar 31 2020 19:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 H 1.08999 * 109.50031 * 55.06161 * 3 2 1 5 5 C 1.53196 * 109.49631 * 294.99408 * 3 2 1 6 6 N 1.46921 * 108.77558 * 185.41598 * 5 3 2 7 7 C 1.34779 * 120.63012 * 233.58842 * 6 5 3 8 8 O 1.21279 * 120.00063 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99869 * 179.97438 * 7 6 5 10 10 C 1.53003 * 109.46973 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46975 * 180.02562 * 10 9 7 12 12 C 1.33639 * 126.04017 * 90.00237 * 11 10 9 13 13 N 1.31776 * 114.49979 * 179.97438 * 12 11 10 14 14 C 1.29034 * 117.12603 * 359.97438 * 13 12 11 15 15 S 1.70972 * 110.16603 * 0.02562 * 14 13 12 16 16 C 1.46928 * 118.74238 * 53.86438 * 6 5 3 17 17 C 1.53627 * 108.53853 * 306.09389 * 16 6 5 18 18 C 1.53044 * 109.24557 * 54.85547 * 17 16 6 19 19 H 1.09002 * 109.44515 * 58.51910 * 18 17 16 20 20 N 1.46491 * 109.46007 * 178.49132 * 18 17 16 21 21 C 1.36942 * 120.00125 * 275.06346 * 20 18 17 22 22 H 1.08001 * 119.99615 * 0.02562 * 21 20 18 23 23 C 1.38806 * 120.00546 * 180.02562 * 21 20 18 24 24 N 1.31618 * 120.00341 * 180.02562 * 23 21 20 25 25 Si 1.86808 * 119.99752 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47089 * 90.00013 * 25 23 21 27 27 H 1.48496 * 109.46821 * 209.99948 * 25 23 21 28 28 H 1.48498 * 109.47121 * 330.00009 * 25 23 21 29 29 H 1.09005 * 109.47001 * 300.00729 * 1 2 3 30 30 H 1.09003 * 109.46722 * 60.00042 * 1 2 3 31 31 H 1.08990 * 109.47698 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47161 * 239.99162 * 2 1 3 33 33 H 1.09009 * 109.46594 * 119.99539 * 2 1 3 34 34 H 1.09004 * 109.58459 * 65.63358 * 5 3 2 35 35 H 1.08990 * 109.70554 * 305.27330 * 5 3 2 36 36 H 1.09002 * 109.46799 * 60.00332 * 9 7 6 37 37 H 1.09002 * 109.47604 * 300.00042 * 9 7 6 38 38 H 1.08995 * 109.47150 * 60.00136 * 10 9 7 39 39 H 1.09001 * 109.47210 * 299.99919 * 10 9 7 40 40 H 1.07996 * 122.74983 * 359.95092 * 12 11 10 41 41 H 1.07998 * 124.91267 * 179.73614 * 14 13 12 42 42 H 1.08999 * 109.58826 * 65.92134 * 16 6 5 43 43 H 1.08995 * 109.59217 * 186.35673 * 16 6 5 44 44 H 1.08999 * 109.63728 * 294.85811 * 17 16 6 45 45 H 1.09008 * 109.45545 * 174.73784 * 17 16 6 46 46 H 0.97002 * 120.00751 * 95.07131 * 20 18 17 47 47 H 0.96999 * 120.00287 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 0.8423 5 6 1.6352 2.1279 -1.3089 6 7 2.2417 3.4655 -1.3495 7 6 1.4818 4.5578 -1.5640 8 8 0.2854 4.4420 -1.7252 9 6 2.1187 5.9231 -1.6022 10 6 1.0433 6.9805 -1.8597 11 6 1.6803 8.3457 -1.8986 12 6 2.1669 8.9557 -2.9836 13 7 2.6746 10.1505 -2.7573 14 6 2.6428 10.5826 -1.5419 15 16 1.9141 9.4201 -0.5218 16 6 3.6931 3.5892 -1.1580 17 6 4.0741 2.8879 0.1547 18 6 3.5656 1.4448 0.1217 19 1 3.9990 0.9268 -0.7339 20 7 3.9578 0.7608 1.3564 21 6 5.1961 0.1849 1.4564 22 1 5.8838 0.2353 0.6252 23 6 5.5676 -0.4637 2.6261 24 7 6.7580 -1.0168 2.7224 25 14 4.3783 -0.5503 4.0641 26 1 3.5449 -1.7736 3.9442 27 1 5.1427 -0.5949 5.3364 28 1 3.5021 0.6485 4.0547 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5497 2.2174 -1.3539 35 1 1.9889 1.5405 -2.1560 36 1 2.8591 5.9563 -2.4015 37 1 2.6052 6.1240 -0.6477 38 1 0.3026 6.9474 -1.0608 39 1 0.5573 6.7794 -2.8144 40 1 2.1462 8.5061 -3.9653 41 1 3.0257 11.5382 -1.2154 42 1 4.2133 3.1176 -1.9917 43 1 3.9661 4.6430 -1.1033 44 1 3.6221 3.4138 0.9956 45 1 5.1586 2.8890 0.2655 46 1 3.3403 0.7157 2.1031 47 1 7.0175 -1.4704 3.5396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037934556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:39 Heat of formation + Delta-G solvation = 9.541397 kcal Electronic energy + Delta-G solvation = -26993.389485 eV Core-core repulsion = 23302.790890 eV Total energy + Delta-G solvation = -3690.598596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.39023 -39.87108 -38.05442 -34.90188 -34.53561 -33.87028 -31.81973 -30.11435 -29.92001 -28.74262 -26.43014 -25.05123 -24.07620 -23.35404 -22.35929 -20.87793 -20.39986 -19.99523 -19.00230 -18.43956 -17.62288 -17.09261 -16.08819 -16.04209 -15.44205 -15.03911 -14.73313 -14.46384 -14.29957 -14.10340 -13.89130 -13.74928 -13.45121 -13.40810 -12.97876 -12.85083 -12.62326 -12.52544 -12.37868 -11.97982 -11.95093 -11.81588 -11.45698 -11.20773 -11.06744 -11.04894 -10.83111 -10.50155 -10.36369 -10.24579 -9.99925 -9.88288 -9.76825 -9.62414 -9.55585 -9.25343 -8.97209 -8.58658 -7.32230 -5.82396 -3.18035 0.35623 1.01634 1.41879 2.49463 2.56923 2.99116 3.33088 3.36233 3.41731 4.00541 4.27275 4.54043 4.63527 4.68447 4.78394 4.91257 4.94640 5.00992 5.10288 5.12085 5.17582 5.24857 5.33980 5.44646 5.49170 5.55247 5.56431 5.64022 5.70548 5.74790 5.83954 5.88661 5.96922 5.99279 6.05163 6.19955 6.24542 6.29765 6.41048 6.50676 6.66311 6.75310 6.89845 7.35393 7.40473 7.93067 8.11874 8.36719 9.14868 9.87681 10.07411 11.35853 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014145 B = 0.002612 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.014024 B =10716.718251 C =11794.512223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.606 5.606 7 C 0.515 3.485 8 O -0.550 6.550 9 C -0.136 4.136 10 C -0.027 4.027 11 C -0.211 4.211 12 C 0.030 3.970 13 N -0.471 5.471 14 C 0.012 3.988 15 S 0.124 5.876 16 C 0.105 3.895 17 C -0.152 4.152 18 C 0.188 3.812 19 H 0.057 0.943 20 N -0.745 5.745 21 C -0.243 4.243 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.933 5.933 25 Si 0.881 3.119 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.176 0.824 41 H 0.198 0.802 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.361 0.639 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.156 18.370 -9.622 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.339 5.339 7 C 0.303 3.697 8 O -0.429 6.429 9 C -0.177 4.177 10 C -0.067 4.067 11 C -0.332 4.332 12 C -0.121 4.121 13 N -0.184 5.184 14 C -0.286 4.286 15 S 0.376 5.624 16 C -0.018 4.018 17 C -0.193 4.193 18 C 0.079 3.921 19 H 0.075 0.925 20 N -0.387 5.387 21 C -0.372 4.372 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.581 5.581 25 Si 0.712 3.288 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.193 0.807 41 H 0.215 0.785 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.099 0.901 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.491 18.555 -9.089 23.641 hybrid contribution -0.434 -0.371 0.450 0.728 sum -11.925 18.183 -8.639 23.398 Atomic orbital electron populations 1.21855 0.96615 1.01204 1.01447 1.21460 0.94554 0.95691 1.03419 1.21827 0.97584 0.96285 0.97106 0.91305 1.21722 0.99502 0.81543 0.97559 1.48195 1.08573 1.06779 1.70317 1.20502 0.86888 0.86082 0.76192 1.90679 1.14863 1.86727 1.50584 1.21722 0.99447 0.91744 1.04741 1.19784 0.96303 0.85595 1.05000 1.26078 1.08939 1.02691 0.95502 1.21803 0.99554 0.90586 1.00150 1.66330 1.18045 1.13781 1.20200 1.28384 1.03951 1.04686 0.91530 1.84214 1.54542 1.10150 1.13460 1.21990 0.79236 1.01312 0.99266 1.22731 1.02641 0.98808 0.95129 1.20157 0.90671 0.90628 0.90686 0.92501 1.42779 1.16633 1.66263 1.12985 1.19040 0.90642 1.27077 1.00473 0.89207 1.24654 0.96408 1.00250 0.97659 1.69692 1.19234 1.41472 1.27679 0.86604 0.80948 0.77826 0.83455 1.21052 1.21802 1.20374 0.93095 0.92921 0.93018 0.91894 0.90517 0.89062 0.91493 0.88473 0.88593 0.89597 0.88742 0.80712 0.78529 0.91112 0.90314 0.92267 0.90065 0.80618 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.67 37.16 0.36 -1.56 16 2 C -0.11 -1.65 5.31 -26.73 -0.14 -1.80 16 3 C -0.11 -1.60 1.93 -90.50 -0.17 -1.77 16 4 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 5 C 0.12 1.57 5.32 -3.71 -0.02 1.55 16 6 N -0.61 -7.52 2.97 -172.50 -0.51 -8.03 16 7 C 0.52 6.36 7.70 -10.98 -0.08 6.28 16 8 O -0.55 -8.44 15.39 5.56 0.09 -8.36 16 9 C -0.14 -1.21 4.03 -27.88 -0.11 -1.32 16 10 C -0.03 -0.23 5.04 -27.88 -0.14 -0.37 16 11 C -0.21 -1.77 5.85 -35.92 -0.21 -1.98 16 12 C 0.03 0.26 11.25 -19.19 -0.22 0.05 16 13 N -0.47 -4.65 10.54 -15.75 -0.17 -4.82 16 14 C 0.01 0.09 12.23 51.59 0.63 0.72 16 15 S 0.12 0.93 23.22 -107.50 -2.50 -1.57 16 16 C 0.11 1.20 6.37 -3.48 -0.02 1.18 16 17 C -0.15 -2.29 5.67 -26.38 -0.15 -2.44 16 18 C 0.19 3.25 2.19 -67.89 -0.15 3.10 16 19 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 20 N -0.74 -16.28 4.14 -53.38 -0.22 -16.50 16 21 C -0.24 -6.42 10.41 -15.06 -0.16 -6.58 16 22 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 23 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 24 N -0.93 -28.46 13.97 55.49 0.78 -27.69 16 25 Si 0.88 21.50 27.74 -169.99 -4.71 16.78 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.31 7.22 -51.92 -0.37 0.93 16 34 H 0.09 1.26 5.72 -51.93 -0.30 0.96 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.72 7.93 -51.93 -0.41 0.31 16 37 H 0.10 0.80 7.70 -51.93 -0.40 0.40 16 38 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 40 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.20 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 46 H 0.36 7.96 5.37 -40.82 -0.22 7.74 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -32.31 385.64 -9.56 -41.87 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.44 Total: 7.36 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -0.68 Total: -4.87 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.12 Total: -57.03 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.78 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.50 Total: -1.57 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.31 -9.56 -41.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037934556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.412 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds