Wall clock time and date at job start Tue Mar 31 2020 19:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 H 1.08999 * 109.50031 * 55.06161 * 3 2 1 5 5 C 1.53196 * 109.49631 * 294.99408 * 3 2 1 6 6 N 1.46921 * 108.77558 * 185.41598 * 5 3 2 7 7 C 1.34779 * 120.63012 * 233.58842 * 6 5 3 8 8 O 1.21279 * 120.00063 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99869 * 179.97438 * 7 6 5 10 10 C 1.53003 * 109.46973 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46975 * 180.02562 * 10 9 7 12 12 C 1.33639 * 126.04017 * 90.00237 * 11 10 9 13 13 N 1.31776 * 114.49979 * 179.97438 * 12 11 10 14 14 C 1.29034 * 117.12603 * 359.97438 * 13 12 11 15 15 S 1.70972 * 110.16603 * 0.02562 * 14 13 12 16 16 C 1.46928 * 118.74238 * 53.86438 * 6 5 3 17 17 C 1.53627 * 108.53853 * 306.09389 * 16 6 5 18 18 C 1.53044 * 109.24557 * 54.85547 * 17 16 6 19 19 H 1.09002 * 109.44515 * 58.51910 * 18 17 16 20 20 N 1.46491 * 109.46007 * 178.49132 * 18 17 16 21 21 C 1.36942 * 120.00125 * 275.06346 * 20 18 17 22 22 H 1.08001 * 119.99615 * 0.02562 * 21 20 18 23 23 C 1.38806 * 120.00546 * 180.02562 * 21 20 18 24 24 N 1.31618 * 120.00341 * 180.02562 * 23 21 20 25 25 Si 1.86808 * 119.99752 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47089 * 90.00013 * 25 23 21 27 27 H 1.48496 * 109.46821 * 209.99948 * 25 23 21 28 28 H 1.48498 * 109.47121 * 330.00009 * 25 23 21 29 29 H 1.09005 * 109.47001 * 300.00729 * 1 2 3 30 30 H 1.09003 * 109.46722 * 60.00042 * 1 2 3 31 31 H 1.08990 * 109.47698 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47161 * 239.99162 * 2 1 3 33 33 H 1.09009 * 109.46594 * 119.99539 * 2 1 3 34 34 H 1.09004 * 109.58459 * 65.63358 * 5 3 2 35 35 H 1.08990 * 109.70554 * 305.27330 * 5 3 2 36 36 H 1.09002 * 109.46799 * 60.00332 * 9 7 6 37 37 H 1.09002 * 109.47604 * 300.00042 * 9 7 6 38 38 H 1.08995 * 109.47150 * 60.00136 * 10 9 7 39 39 H 1.09001 * 109.47210 * 299.99919 * 10 9 7 40 40 H 1.07996 * 122.74983 * 359.95092 * 12 11 10 41 41 H 1.07998 * 124.91267 * 179.73614 * 14 13 12 42 42 H 1.08999 * 109.58826 * 65.92134 * 16 6 5 43 43 H 1.08995 * 109.59217 * 186.35673 * 16 6 5 44 44 H 1.08999 * 109.63728 * 294.85811 * 17 16 6 45 45 H 1.09008 * 109.45545 * 174.73784 * 17 16 6 46 46 H 0.97002 * 120.00751 * 95.07131 * 20 18 17 47 47 H 0.96999 * 120.00287 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 0.8423 5 6 1.6352 2.1279 -1.3089 6 7 2.2417 3.4655 -1.3495 7 6 1.4818 4.5578 -1.5640 8 8 0.2854 4.4420 -1.7252 9 6 2.1187 5.9231 -1.6022 10 6 1.0433 6.9805 -1.8597 11 6 1.6803 8.3457 -1.8986 12 6 2.1669 8.9557 -2.9836 13 7 2.6746 10.1505 -2.7573 14 6 2.6428 10.5826 -1.5419 15 16 1.9141 9.4201 -0.5218 16 6 3.6931 3.5892 -1.1580 17 6 4.0741 2.8879 0.1547 18 6 3.5656 1.4448 0.1217 19 1 3.9990 0.9268 -0.7339 20 7 3.9578 0.7608 1.3564 21 6 5.1961 0.1849 1.4564 22 1 5.8838 0.2353 0.6252 23 6 5.5676 -0.4637 2.6261 24 7 6.7580 -1.0168 2.7224 25 14 4.3783 -0.5503 4.0641 26 1 3.5449 -1.7736 3.9442 27 1 5.1427 -0.5949 5.3364 28 1 3.5021 0.6485 4.0547 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5497 2.2174 -1.3539 35 1 1.9889 1.5405 -2.1560 36 1 2.8591 5.9563 -2.4015 37 1 2.6052 6.1240 -0.6477 38 1 0.3026 6.9474 -1.0608 39 1 0.5573 6.7794 -2.8144 40 1 2.1462 8.5061 -3.9653 41 1 3.0257 11.5382 -1.2154 42 1 4.2133 3.1176 -1.9917 43 1 3.9661 4.6430 -1.1033 44 1 3.6221 3.4138 0.9956 45 1 5.1586 2.8890 0.2655 46 1 3.3403 0.7157 2.1031 47 1 7.0175 -1.4704 3.5396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037934556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:38 Heat of formation + Delta-G solvation = -10.104707 kcal Electronic energy + Delta-G solvation = -26994.241404 eV Core-core repulsion = 23302.790890 eV Total energy + Delta-G solvation = -3691.450515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.39668 -40.53315 -39.25929 -36.27719 -35.49436 -35.03969 -33.60183 -31.49381 -30.90198 -29.74028 -27.32024 -26.23103 -25.20328 -24.41382 -23.67044 -22.17915 -21.34125 -20.95146 -20.11947 -19.41336 -19.06355 -18.07938 -17.06383 -16.91126 -16.68296 -16.22390 -16.00194 -15.52643 -15.24988 -15.16351 -14.89705 -14.72905 -14.67723 -14.54373 -14.40972 -14.00837 -13.84355 -13.50548 -13.33897 -13.23582 -12.97874 -12.84066 -12.67995 -12.62501 -12.53099 -12.11757 -12.09731 -11.84587 -11.83791 -11.62141 -11.55625 -11.11317 -10.99039 -10.78928 -10.58265 -10.18838 -9.85689 -9.65715 -9.25878 -7.99687 -5.31308 -0.23132 0.44603 0.83554 1.37816 1.39332 1.46478 1.61689 1.86161 2.04963 2.49228 3.31632 3.37357 3.53739 3.58136 3.74126 3.93839 3.95596 4.01838 4.05504 4.15811 4.26535 4.31629 4.40158 4.44289 4.45963 4.49594 4.60802 4.62114 4.70194 4.80266 4.83122 4.89073 4.98969 5.01263 5.03230 5.07353 5.16616 5.24222 5.26436 5.34814 5.45606 5.50535 5.64938 5.81026 6.24682 6.43125 6.76476 7.10827 7.15376 7.87998 8.05885 9.21931 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014145 B = 0.002612 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.014024 B =10716.718251 C =11794.512223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.096 4.096 4 H 0.061 0.939 5 C 0.124 3.876 6 N -0.608 5.608 7 C 0.514 3.486 8 O -0.581 6.581 9 C -0.129 4.129 10 C -0.019 4.019 11 C -0.219 4.219 12 C 0.023 3.977 13 N -0.503 5.503 14 C 0.015 3.985 15 S 0.138 5.862 16 C 0.114 3.886 17 C -0.145 4.145 18 C 0.181 3.819 19 H 0.047 0.953 20 N -0.747 5.747 21 C -0.216 4.216 22 H 0.062 0.938 23 C -0.063 4.063 24 N -0.984 5.984 25 Si 0.946 3.054 26 H -0.281 1.281 27 H -0.300 1.300 28 H -0.256 1.256 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.186 0.814 41 H 0.224 0.776 42 H 0.082 0.918 43 H 0.110 0.890 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.362 0.638 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.609 20.286 -10.143 25.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.116 4.116 4 H 0.080 0.920 5 C 0.001 3.999 6 N -0.340 5.340 7 C 0.304 3.696 8 O -0.462 6.462 9 C -0.169 4.169 10 C -0.059 4.059 11 C -0.340 4.340 12 C -0.128 4.128 13 N -0.216 5.216 14 C -0.282 4.282 15 S 0.390 5.610 16 C -0.009 4.009 17 C -0.186 4.186 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.390 5.390 21 C -0.347 4.347 22 H 0.080 0.920 23 C -0.254 4.254 24 N -0.636 5.636 25 Si 0.774 3.226 26 H -0.208 1.208 27 H -0.227 1.227 28 H -0.181 1.181 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.203 0.797 41 H 0.241 0.759 42 H 0.101 0.899 43 H 0.128 0.872 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.195 0.805 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.983 20.514 -9.644 26.122 hybrid contribution 0.018 -0.916 0.522 1.054 sum -12.965 19.598 -9.122 25.207 Atomic orbital electron populations 1.21791 0.94690 1.02012 1.01939 1.21426 0.96246 0.95230 1.02187 1.21681 0.95267 0.96647 0.97982 0.92032 1.21608 0.99468 0.82136 0.96648 1.48253 1.08906 1.06599 1.70256 1.21056 0.86463 0.86970 0.75070 1.90670 1.16351 1.87232 1.51933 1.21740 0.99693 0.89432 1.06078 1.19660 0.95992 0.85744 1.04550 1.26023 1.09380 1.02738 0.95899 1.22030 0.99393 0.90515 1.00847 1.66378 1.19412 1.14500 1.21335 1.28891 1.02817 1.05502 0.91011 1.84178 1.54127 1.09788 1.12884 1.21985 0.78720 1.02875 0.97302 1.22541 1.01335 0.97332 0.97368 1.20409 0.92592 0.91402 0.88266 0.93447 1.42798 1.14970 1.66547 1.14648 1.18997 0.91488 1.25211 0.99009 0.92048 1.25372 0.98129 1.01178 1.00715 1.69862 1.21616 1.43724 1.28360 0.85544 0.78911 0.78581 0.79524 1.20784 1.22722 1.18072 0.93185 0.91802 0.92110 0.91701 0.93158 0.89269 0.90476 0.86336 0.87537 0.90604 0.88919 0.79666 0.75927 0.89931 0.87185 0.92637 0.91796 0.80524 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.67 71.98 0.70 -2.71 16 2 C -0.11 -3.18 5.31 30.59 0.16 -3.01 16 3 C -0.10 -2.70 1.93 -10.71 -0.02 -2.72 16 4 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.12 3.02 5.32 86.36 0.46 3.47 16 6 N -0.61 -13.53 2.97 -818.07 -2.43 -15.96 16 7 C 0.51 11.42 7.70 87.66 0.67 12.10 16 8 O -0.58 -16.80 15.39 -3.02 -0.05 -16.85 16 9 C -0.13 -1.91 4.03 29.85 0.12 -1.79 16 10 C -0.02 -0.29 5.04 29.85 0.15 -0.14 16 11 C -0.22 -3.24 5.85 24.64 0.14 -3.09 16 12 C 0.02 0.36 11.25 83.66 0.94 1.30 16 13 N -0.50 -9.03 10.54 -203.75 -2.15 -11.18 16 14 C 0.01 0.19 12.23 130.65 1.60 1.79 16 15 S 0.14 1.77 23.22 -56.49 -1.31 0.45 16 16 C 0.11 2.28 6.37 86.51 0.55 2.83 16 17 C -0.15 -4.17 5.67 30.82 0.17 -3.99 16 18 C 0.18 6.12 2.19 45.02 0.10 6.22 16 19 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 20 N -0.75 -32.47 4.14 -322.81 -1.34 -33.81 16 21 C -0.22 -11.62 10.41 84.03 0.87 -10.75 16 22 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 23 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 24 N -0.98 -61.83 13.97 21.65 0.30 -61.53 16 25 Si 0.95 44.85 27.74 68.60 1.90 46.75 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 27 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 28 H -0.26 -11.04 6.52 99.48 0.65 -10.39 16 29 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.06 1.34 6.70 -2.39 -0.02 1.32 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 1.68 7.22 -2.38 -0.02 1.67 16 34 H 0.09 2.27 5.72 -2.39 -0.01 2.26 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.12 1.30 7.93 -2.39 -0.02 1.28 16 37 H 0.11 1.41 7.70 -2.39 -0.02 1.39 16 38 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 39 H 0.09 1.44 8.10 -2.39 -0.02 1.42 16 40 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 41 H 0.22 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.11 1.58 5.93 -2.39 -0.01 1.56 16 44 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 46 H 0.36 15.61 5.37 -92.71 -0.50 15.12 16 47 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -71.06 385.64 2.44 -68.62 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.41 Total: 27.11 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 7.09 Total: -3.62 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -5.61 Total: -122.47 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.05 Total: -16.85 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.90 Total: 46.75 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.31 Total: 0.45 kcal Total: -71.06 2.44 -68.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037934556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.512 kcal (2) G-P(sol) polarization free energy of solvation -71.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds