Wall clock time and date at job start Tue Mar 31 2020 19:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47072 * 2 1 4 4 H 1.08996 * 109.52497 * 54.91734 * 3 2 1 5 5 C 1.52756 * 109.56436 * 294.96458 * 3 2 1 6 6 N 1.46928 * 109.00973 * 185.55653 * 5 3 2 7 7 C 1.34775 * 120.62896 * 233.58614 * 6 5 3 8 8 O 1.21683 * 120.00067 * 5.32413 * 7 6 5 9 9 C 1.46685 * 119.99948 * 185.32421 * 7 6 5 10 10 S 1.76212 * 126.13166 * 41.96253 * 9 7 6 11 11 C 1.70947 * 90.31527 * 179.97438 * 10 9 7 12 12 C 1.50707 * 124.80232 * 180.02562 * 11 10 9 13 13 N 1.29430 * 110.39121 * 359.73492 * 11 10 9 14 14 C 1.30944 * 117.36343 * 0.49409 * 13 11 10 15 15 C 1.50696 * 122.90514 * 179.75485 * 14 13 11 16 16 C 1.46922 * 118.73934 * 53.30594 * 6 5 3 17 17 C 1.53199 * 108.77820 * 306.64321 * 16 6 5 18 18 C 1.53042 * 109.49558 * 174.99715 * 3 2 1 19 19 H 1.09005 * 109.45880 * 61.29820 * 18 3 2 20 20 N 1.46495 * 109.45077 * 301.32945 * 18 3 2 21 21 C 1.36942 * 120.00159 * 154.93934 * 20 18 3 22 22 H 1.08007 * 119.99616 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00221 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00177 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99983 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46848 * 59.99972 * 25 23 21 27 27 H 1.48501 * 109.46968 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47085 * 299.99960 * 25 23 21 29 29 H 1.09000 * 109.47240 * 300.00220 * 1 2 3 30 30 H 1.08998 * 109.46445 * 60.00123 * 1 2 3 31 31 H 1.09001 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47240 * 239.99780 * 2 1 3 33 33 H 1.09005 * 109.47004 * 119.99535 * 2 1 3 34 34 H 1.08998 * 109.51168 * 65.67022 * 5 3 2 35 35 H 1.09003 * 109.43098 * 305.38711 * 5 3 2 36 36 H 1.09001 * 109.47132 * 89.99797 * 12 11 10 37 37 H 1.08997 * 109.46534 * 209.99850 * 12 11 10 38 38 H 1.08991 * 109.47182 * 329.99801 * 12 11 10 39 39 H 1.09002 * 109.47071 * 269.71384 * 15 14 13 40 40 H 1.08993 * 109.47227 * 149.71304 * 15 14 13 41 41 H 1.09004 * 109.47189 * 29.71139 * 15 14 13 42 42 H 1.08999 * 109.58952 * 66.43699 * 16 6 5 43 43 H 1.09001 * 109.58411 * 186.72002 * 16 6 5 44 44 H 1.08994 * 109.49879 * 174.58199 * 17 16 6 45 45 H 1.08994 * 109.49700 * 294.68917 * 17 16 6 46 46 H 0.97003 * 120.00183 * 334.93818 * 20 18 3 47 47 H 0.96989 * 120.00067 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 0.8406 5 6 1.6378 2.1273 -1.3049 6 7 2.2452 3.4643 -1.3507 7 6 1.4857 4.5565 -1.5673 8 8 0.2750 4.4528 -1.6305 9 6 2.1187 5.8701 -1.7268 10 16 3.5806 6.2139 -2.6487 11 6 3.4660 7.8677 -2.2315 12 6 4.4351 8.9349 -2.6711 13 7 2.4257 8.0747 -1.4897 14 6 1.6833 7.0381 -1.1916 15 6 0.4484 7.1353 -0.3334 16 6 3.6953 3.5887 -1.1499 17 6 4.0737 2.8882 0.1589 18 6 3.5652 1.4450 0.1258 19 1 4.0009 0.9260 -0.7280 20 7 3.9539 0.7622 1.3622 21 6 5.1915 0.1852 1.4659 22 1 5.8812 0.2340 0.6362 23 6 5.5595 -0.4623 2.6373 24 7 4.7192 -0.5213 3.6486 25 14 7.2475 -1.2499 2.7784 26 1 8.2944 -0.2124 2.5977 27 1 7.3932 -1.8714 4.1192 28 1 7.3968 -2.2915 1.7306 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 0.5524 2.2173 -1.3493 35 1 1.9923 1.5358 -2.1491 36 1 4.0993 9.3641 -3.6151 37 1 4.4829 9.7167 -1.9131 38 1 5.4239 8.4957 -2.8030 39 1 0.7197 6.9868 0.7118 40 1 -0.2655 6.3692 -0.6358 41 1 -0.0023 8.1203 -0.4554 42 1 4.2210 3.1189 -1.9811 43 1 3.9674 4.6428 -1.0944 44 1 5.1578 2.8894 0.2720 45 1 3.6193 3.4148 0.9981 46 1 3.3345 0.7187 2.1076 47 1 4.9765 -0.9734 4.4672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037969101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:32 Heat of formation + Delta-G solvation = 10.341165 kcal Electronic energy + Delta-G solvation = -27712.796449 eV Core-core repulsion = 24022.232534 eV Total energy + Delta-G solvation = -3690.563915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.64115 -39.66058 -37.76432 -34.81982 -33.86224 -33.19323 -31.77605 -29.67639 -29.53115 -29.36536 -27.87269 -25.06991 -23.94369 -23.19817 -22.90898 -21.32793 -20.83277 -19.66613 -18.56163 -18.20421 -17.15589 -16.86902 -16.14724 -15.52386 -15.14739 -14.87928 -14.57841 -14.16604 -13.95975 -13.80795 -13.63788 -13.55568 -13.35610 -13.24804 -13.08508 -12.80590 -12.75777 -12.42806 -12.31055 -12.12774 -11.84519 -11.68726 -11.53428 -11.32671 -10.95740 -10.89939 -10.74301 -10.39611 -10.26017 -10.20272 -10.17066 -9.81620 -9.78137 -9.63157 -9.45000 -8.95147 -8.84031 -8.55640 -6.99747 -5.80267 -3.09301 0.12798 0.93142 1.35233 2.32209 2.81465 3.11196 3.40465 3.45349 3.46410 3.75573 4.46219 4.54947 4.63049 4.91533 4.97263 5.02408 5.07000 5.17896 5.21658 5.30498 5.40768 5.44224 5.51355 5.52644 5.57487 5.63183 5.65377 5.65858 5.72339 5.84545 5.96993 6.08293 6.12009 6.14656 6.27953 6.32227 6.35880 6.42491 6.51340 6.63819 6.78660 6.92571 7.01365 7.32994 7.46841 7.65140 8.05417 8.37783 9.49264 10.06198 10.41222 11.42036 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.003362 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.656288 B = 8325.531951 C = 9709.195454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.071 0.929 5 C 0.121 3.879 6 N -0.597 5.597 7 C 0.598 3.402 8 O -0.530 6.530 9 C -0.292 4.292 10 S 0.177 5.823 11 C 0.048 3.952 12 C -0.080 4.080 13 N -0.477 5.477 14 C 0.140 3.860 15 C -0.093 4.093 16 C 0.098 3.902 17 C -0.149 4.149 18 C 0.184 3.816 19 H 0.049 0.951 20 N -0.719 5.719 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.806 14.821 -14.043 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.001 4.001 6 N -0.329 5.329 7 C 0.384 3.616 8 O -0.409 6.409 9 C -0.416 4.416 10 S 0.434 5.566 11 C -0.227 4.227 12 C -0.140 4.140 13 N -0.193 5.193 14 C 0.003 3.997 15 C -0.152 4.152 16 C -0.026 4.026 17 C -0.190 4.190 18 C 0.073 3.927 19 H 0.067 0.933 20 N -0.359 5.359 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.218 0.782 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.614 14.612 -14.542 20.929 hybrid contribution 0.279 -0.301 0.981 1.064 sum -3.335 14.311 -13.560 19.995 Atomic orbital electron populations 1.21847 0.96758 1.01076 1.01336 1.21447 0.94407 0.95521 1.03540 1.21709 0.97713 0.96376 0.96707 0.91091 1.21734 0.99533 0.80710 0.98167 1.48044 1.08677 1.06617 1.69537 1.16725 0.86101 0.81947 0.76821 1.90777 1.13053 1.85114 1.51962 1.25377 1.03584 0.99713 1.12910 1.84026 1.21359 1.03799 1.47406 1.27434 0.97779 0.98818 0.98689 1.20511 0.95358 0.95303 1.02839 1.66066 1.05082 1.32830 1.15276 1.20530 0.97095 0.85267 0.96815 1.20615 0.92411 1.04369 0.97804 1.22140 0.79278 1.01400 0.99807 1.22676 1.02329 0.99268 0.94717 1.20184 0.90768 0.90397 0.91314 0.93335 1.42395 1.16519 1.64381 1.12652 1.19166 0.91834 1.27511 0.98631 0.91285 1.24722 0.98106 1.01464 0.96409 1.69644 1.35289 1.48283 1.04734 0.86308 0.84141 0.79194 0.76761 1.21332 1.21746 1.21281 0.92937 0.93227 0.93133 0.92422 0.89701 0.88853 0.91352 0.89284 0.88953 0.89725 0.90224 0.88603 0.90319 0.91066 0.90572 0.90371 0.92145 0.78159 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.16 0.36 -1.72 16 2 C -0.11 -1.76 5.31 -26.73 -0.14 -1.90 16 3 C -0.11 -1.69 1.91 -90.72 -0.17 -1.87 16 4 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 5 C 0.12 1.73 5.31 -3.93 -0.02 1.71 16 6 N -0.60 -8.64 2.98 -174.57 -0.52 -9.16 16 7 C 0.60 9.17 7.30 -12.85 -0.09 9.08 16 8 O -0.53 -9.27 14.67 5.20 0.08 -9.19 16 9 C -0.29 -3.99 5.36 -37.09 -0.20 -4.18 16 10 S 0.18 1.83 20.31 -107.50 -2.18 -0.35 16 11 C 0.05 0.49 7.39 -13.29 -0.10 0.40 16 12 C -0.08 -0.49 10.46 36.01 0.38 -0.11 16 13 N -0.48 -6.08 10.50 -7.70 -0.08 -6.16 16 14 C 0.14 1.89 6.79 -83.89 -0.57 1.32 16 15 C -0.09 -1.12 10.08 36.00 0.36 -0.76 16 16 C 0.10 1.32 5.69 -3.71 -0.02 1.30 16 17 C -0.15 -2.48 5.66 -26.60 -0.15 -2.63 16 18 C 0.18 3.39 2.20 -67.89 -0.15 3.24 16 19 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 20 N -0.72 -16.89 4.33 -53.38 -0.23 -17.12 16 21 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 22 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 25 Si 0.90 21.74 29.55 -169.99 -5.02 16.72 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.61 7.22 -51.93 -0.37 1.24 16 34 H 0.09 1.38 5.71 -51.93 -0.30 1.08 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.10 1.27 6.21 -51.93 -0.32 0.94 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.08 0.96 4.60 -40.20 -0.18 0.78 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.38 9.79 7.51 -40.82 -0.31 9.49 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -31.10 383.28 -9.52 -40.62 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.29 Total: 8.44 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -0.76 Total: -2.99 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.11 Total: -59.04 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.18 Total: -0.35 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.10 -9.52 -40.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037969101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.966 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds