Wall clock time and date at job start Tue Mar 31 2020 19:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47054 * 2 1 4 4 H 1.09004 * 109.50387 * 55.06293 * 3 2 1 5 5 C 1.53194 * 109.49611 * 294.99712 * 3 2 1 6 6 N 1.46928 * 108.77653 * 185.41457 * 5 3 2 7 7 C 1.34769 * 120.63241 * 233.63077 * 6 5 3 8 8 O 1.21684 * 119.99967 * 355.77826 * 7 6 5 9 9 C 1.46684 * 120.00177 * 175.77743 * 7 6 5 10 10 S 1.76207 * 126.12978 * 48.78220 * 9 7 6 11 11 C 1.70955 * 90.31472 * 180.02562 * 10 9 7 12 12 C 1.50709 * 124.80467 * 180.02562 * 11 10 9 13 13 N 1.29423 * 110.39268 * 359.97438 * 11 10 9 14 14 C 1.30948 * 117.36158 * 359.70589 * 13 11 10 15 15 C 1.50695 * 122.90548 * 180.34344 * 14 13 11 16 16 C 1.46926 * 118.73624 * 53.60963 * 6 5 3 17 17 C 1.53186 * 108.77682 * 306.39008 * 16 6 5 18 18 C 1.53040 * 109.31359 * 54.63796 * 17 16 6 19 19 H 1.09001 * 109.46588 * 178.61683 * 18 17 16 20 20 N 1.46507 * 109.46179 * 58.65329 * 18 17 16 21 21 C 1.36929 * 119.99583 * 84.93352 * 20 18 17 22 22 H 1.08005 * 120.00823 * 0.02562 * 21 20 18 23 23 C 1.38818 * 119.99646 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99851 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 119.99991 * 0.02562 * 23 21 20 26 26 H 1.48510 * 109.47198 * 89.99730 * 25 23 21 27 27 H 1.48497 * 109.47351 * 209.99895 * 25 23 21 28 28 H 1.48495 * 109.47575 * 330.00114 * 25 23 21 29 29 H 1.09000 * 109.47169 * 299.99986 * 1 2 3 30 30 H 1.08998 * 109.47618 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47252 * 60.00225 * 1 2 3 32 32 H 1.08998 * 109.46783 * 119.99564 * 2 1 3 33 33 H 1.09002 * 109.47018 * 239.99485 * 2 1 3 34 34 H 1.08996 * 109.58715 * 305.20048 * 5 3 2 35 35 H 1.08999 * 109.58291 * 65.48705 * 5 3 2 36 36 H 1.09001 * 109.46729 * 89.99997 * 12 11 10 37 37 H 1.08994 * 109.46802 * 209.99335 * 12 11 10 38 38 H 1.08993 * 109.47068 * 329.99650 * 12 11 10 39 39 H 1.09002 * 109.47962 * 270.19802 * 15 14 13 40 40 H 1.09001 * 109.47153 * 30.20341 * 15 14 13 41 41 H 1.09000 * 109.47321 * 150.19671 * 15 14 13 42 42 H 1.09004 * 109.58803 * 66.17860 * 16 6 5 43 43 H 1.08998 * 109.58875 * 186.60221 * 16 6 5 44 44 H 1.09005 * 109.49996 * 174.58244 * 17 16 6 45 45 H 1.08995 * 109.50058 * 294.68531 * 17 16 6 46 46 H 0.97000 * 119.99937 * 264.93338 * 20 18 17 47 47 H 0.96995 * 119.99628 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6350 2.1279 -1.3088 6 7 2.2415 3.4656 -1.3495 7 6 1.4815 4.5579 -1.5630 8 8 0.2944 4.4361 -1.8008 9 6 2.0854 5.8935 -1.5089 10 16 3.5620 6.4000 -2.3262 11 6 3.3959 7.9711 -1.6730 12 6 4.3496 9.1113 -1.9214 13 7 2.3345 8.0431 -0.9359 14 6 1.6038 6.9621 -0.8257 15 6 0.3400 6.9082 -0.0067 16 6 3.6922 3.5898 -1.1523 17 6 4.0740 2.8880 0.1547 18 6 3.5656 1.4449 0.1217 19 1 3.8573 0.9359 1.0403 20 7 4.1480 0.7483 -1.0281 21 6 5.3860 0.1726 -0.9245 22 1 5.9331 0.2316 0.0049 23 6 5.9377 -0.4879 -2.0137 24 7 7.1279 -1.0409 -1.9143 25 14 4.9914 -0.5905 -3.6210 26 1 5.3327 0.5778 -4.4719 27 1 5.3556 -1.8431 -4.3307 28 1 3.5336 -0.5878 -3.3383 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.9908 1.5396 -2.1547 35 1 0.5495 2.2150 -1.3550 36 1 4.0282 9.6687 -2.8012 37 1 4.3582 9.7729 -1.0553 38 1 5.3520 8.7168 -2.0873 39 1 0.5811 6.6137 1.0147 40 1 -0.1308 7.8912 0.0002 41 1 -0.3447 6.1805 -0.4425 42 1 4.2156 3.1206 -1.9854 43 1 3.9641 4.6437 -1.0942 44 1 5.1585 2.8891 0.2649 45 1 3.6219 3.4138 0.9956 46 1 3.6566 0.6950 -1.8627 47 1 7.5132 -1.5027 -2.6753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037969103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:34 Heat of formation + Delta-G solvation = -2.263181 kcal Electronic energy + Delta-G solvation = -28280.787583 eV Core-core repulsion = 24589.677103 eV Total energy + Delta-G solvation = -3691.110480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.78983 -40.79959 -39.23766 -36.07371 -35.45368 -34.04385 -33.60474 -31.54789 -30.69260 -30.21459 -29.18590 -26.53035 -25.27240 -25.04893 -23.94287 -22.65509 -22.10837 -20.40495 -19.91970 -19.44372 -19.12005 -18.01877 -17.33916 -16.73199 -16.46785 -16.19456 -15.95435 -15.71799 -15.39679 -15.16339 -14.93065 -14.63310 -14.52215 -14.32868 -14.27057 -14.18889 -13.84712 -13.48101 -13.42505 -13.21005 -13.14641 -12.97729 -12.87174 -12.69656 -12.53227 -12.45227 -12.30562 -12.04852 -11.88070 -11.65383 -11.54526 -11.32448 -11.20972 -10.93929 -10.78504 -10.36667 -9.85084 -9.69190 -9.25132 -7.98302 -5.29312 -0.76321 0.02108 0.46168 1.34872 1.36336 1.36616 1.44144 1.67517 1.94584 2.48653 2.96200 3.33267 3.35968 3.57779 3.70614 3.87220 3.89337 3.93084 3.99882 4.15375 4.20057 4.33188 4.41038 4.47507 4.51701 4.60029 4.61161 4.63920 4.66229 4.72963 4.79109 4.85121 4.93311 4.97361 5.07312 5.10161 5.13183 5.17054 5.22020 5.23214 5.35245 5.43465 5.57259 5.84078 6.16276 6.25869 6.54015 6.85777 7.12018 7.88253 8.06672 9.23531 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.004263 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.496097 B = 6566.188519 C = 7942.521000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.095 4.095 4 H 0.092 0.908 5 C 0.120 3.880 6 N -0.594 5.594 7 C 0.600 3.400 8 O -0.558 6.558 9 C -0.326 4.326 10 S 0.192 5.808 11 C 0.062 3.938 12 C -0.083 4.083 13 N -0.498 5.498 14 C 0.136 3.864 15 C -0.088 4.088 16 C 0.109 3.891 17 C -0.140 4.140 18 C 0.178 3.822 19 H 0.055 0.945 20 N -0.741 5.741 21 C -0.212 4.212 22 H 0.064 0.936 23 C -0.055 4.055 24 N -0.983 5.983 25 Si 0.933 3.067 26 H -0.282 1.282 27 H -0.300 1.300 28 H -0.257 1.257 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.361 0.639 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 18.528 2.573 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.115 4.115 4 H 0.110 0.890 5 C -0.002 4.002 6 N -0.325 5.325 7 C 0.387 3.613 8 O -0.439 6.439 9 C -0.450 4.450 10 S 0.450 5.550 11 C -0.213 4.213 12 C -0.143 4.143 13 N -0.214 5.214 14 C -0.001 4.001 15 C -0.147 4.147 16 C -0.015 4.015 17 C -0.180 4.180 18 C 0.070 3.930 19 H 0.073 0.927 20 N -0.385 5.385 21 C -0.343 4.343 22 H 0.082 0.918 23 C -0.247 4.247 24 N -0.634 5.634 25 Si 0.762 3.238 26 H -0.208 1.208 27 H -0.228 1.228 28 H -0.181 1.181 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.196 0.804 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.502 18.418 2.100 21.306 hybrid contribution -0.609 -0.713 -0.761 1.207 sum -11.110 17.705 1.339 20.945 Atomic orbital electron populations 1.21802 0.94496 1.02115 1.02092 1.21395 0.96334 0.94791 1.02201 1.21723 0.95359 0.96908 0.97461 0.88985 1.21712 0.99442 0.81019 0.97995 1.48064 1.08816 1.06356 1.69290 1.16932 0.85397 0.82739 0.76253 1.90758 1.16029 1.86431 1.50679 1.25249 1.04962 1.00149 1.14597 1.84194 1.18965 1.05550 1.46327 1.28203 0.97001 1.00367 0.95732 1.20779 0.95616 0.92615 1.05282 1.66158 1.06164 1.28749 1.20299 1.20772 0.97540 0.85541 0.96280 1.20575 0.91030 1.04514 0.98589 1.21969 0.78583 1.01541 0.99357 1.22358 1.01732 0.97603 0.96339 1.20412 0.91108 0.91015 0.90454 0.92735 1.42800 1.18143 1.65829 1.11760 1.19000 0.92734 1.24916 0.97662 0.91843 1.25243 0.97379 1.01221 1.00818 1.69848 1.18403 1.43496 1.31661 0.85742 0.79597 0.76885 0.81568 1.20806 1.22759 1.18146 0.91751 0.92075 0.92912 0.91538 0.93344 0.92663 0.88469 0.87381 0.88027 0.87728 0.89168 0.89007 0.90345 0.91705 0.89132 0.91248 0.90604 0.80444 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.67 71.98 0.70 -2.62 16 2 C -0.11 -3.03 5.19 30.59 0.16 -2.87 16 3 C -0.09 -2.68 2.14 -10.72 -0.02 -2.71 16 4 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 5 C 0.12 3.61 5.01 86.36 0.43 4.04 16 6 N -0.59 -17.89 2.97 -823.63 -2.45 -20.33 16 7 C 0.60 18.61 7.20 86.45 0.62 19.23 16 8 O -0.56 -19.73 15.01 -4.30 -0.06 -19.80 16 9 C -0.33 -8.89 5.38 23.88 0.13 -8.76 16 10 S 0.19 4.17 20.31 -56.49 -1.15 3.02 16 11 C 0.06 1.19 7.39 88.47 0.65 1.84 16 12 C -0.08 -0.84 10.46 71.24 0.75 -0.10 16 13 N -0.50 -11.83 10.50 -178.28 -1.87 -13.70 16 14 C 0.14 3.49 6.79 42.09 0.29 3.77 16 15 C -0.09 -1.92 10.08 71.23 0.72 -1.20 16 16 C 0.11 3.22 5.71 86.36 0.49 3.71 16 17 C -0.14 -4.23 5.78 30.67 0.18 -4.06 16 18 C 0.18 6.04 2.53 45.02 0.11 6.15 16 19 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 20 N -0.74 -31.26 3.52 -322.79 -1.14 -32.39 16 21 C -0.21 -11.15 10.41 84.04 0.87 -10.27 16 22 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 23 C -0.06 -3.10 5.50 84.86 0.47 -2.64 16 24 N -0.98 -60.92 13.97 21.65 0.30 -60.61 16 25 Si 0.93 44.24 27.74 68.60 1.90 46.14 16 26 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 27 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 28 H -0.26 -11.10 6.52 99.48 0.65 -10.45 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.19 6.69 -2.39 -0.02 1.18 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.57 7.69 -2.39 -0.02 1.55 16 34 H 0.06 1.81 6.64 -2.39 -0.02 1.79 16 35 H 0.10 2.85 5.75 -2.39 -0.01 2.84 16 36 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 41 H 0.08 1.94 6.45 -2.39 -0.02 1.92 16 42 H 0.06 2.20 7.74 -2.38 -0.02 2.18 16 43 H 0.09 2.39 4.20 -13.09 -0.06 2.33 16 44 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 45 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.36 15.22 3.80 -92.71 -0.35 14.87 16 47 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -68.27 376.96 2.61 -65.66 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.53 Total: 28.47 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 6.54 Total: 3.54 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -5.15 Total: -127.04 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.06 Total: -19.80 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.90 Total: 46.14 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -1.15 Total: 3.02 kcal Total: -68.27 2.61 -65.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037969103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.399 kcal (2) G-P(sol) polarization free energy of solvation -68.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds