Wall clock time and date at job start Tue Mar 31 2020 19:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47078 * 2 1 4 4 H 1.08999 * 109.49866 * 304.93502 * 3 2 1 5 5 C 1.53192 * 109.49701 * 65.00270 * 3 2 1 6 6 N 1.46918 * 108.77490 * 174.58474 * 5 3 2 7 7 C 1.34784 * 120.62856 * 126.36762 * 6 5 3 8 8 O 1.21686 * 119.99672 * 4.32965 * 7 6 5 9 9 C 1.46686 * 119.99916 * 184.32727 * 7 6 5 10 10 S 1.76215 * 126.12919 * 311.42214 * 9 7 6 11 11 C 1.70956 * 90.31248 * 180.02562 * 10 9 7 12 12 C 1.50695 * 124.80554 * 179.97438 * 11 10 9 13 13 N 1.29429 * 110.38973 * 359.97438 * 11 10 9 14 14 C 1.30947 * 117.36524 * 0.02562 * 13 11 10 15 15 C 1.50697 * 122.90139 * 179.72698 * 14 13 11 16 16 C 1.46924 * 118.74426 * 306.64591 * 6 5 3 17 17 C 1.52758 * 109.00787 * 53.30744 * 16 6 5 18 18 C 1.53037 * 109.49668 * 184.84032 * 3 2 1 19 19 H 1.08996 * 109.46247 * 58.66698 * 18 3 2 20 20 N 1.46505 * 109.46260 * 298.70418 * 18 3 2 21 21 C 1.36940 * 119.99870 * 155.00231 * 20 18 3 22 22 H 1.07999 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99675 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00163 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00084 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47212 * 89.99656 * 25 23 21 27 27 H 1.48501 * 109.47293 * 210.00225 * 25 23 21 28 28 H 1.48505 * 109.47026 * 329.99681 * 25 23 21 29 29 H 1.09008 * 109.47044 * 299.99541 * 1 2 3 30 30 H 1.08996 * 109.47598 * 59.99552 * 1 2 3 31 31 H 1.08999 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47265 * 240.00179 * 2 1 3 33 33 H 1.08996 * 109.47598 * 120.00448 * 2 1 3 34 34 H 1.09005 * 109.58528 * 54.80134 * 5 3 2 35 35 H 1.08998 * 109.70228 * 294.44710 * 5 3 2 36 36 H 1.08997 * 109.47183 * 269.99847 * 12 11 10 37 37 H 1.08997 * 109.46981 * 29.99516 * 12 11 10 38 38 H 1.08996 * 109.47688 * 149.99687 * 12 11 10 39 39 H 1.08996 * 109.47193 * 90.02879 * 15 14 13 40 40 H 1.09003 * 109.47115 * 210.02848 * 15 14 13 41 41 H 1.08998 * 109.47516 * 330.02732 * 15 14 13 42 42 H 1.08999 * 109.58936 * 173.14511 * 16 6 5 43 43 H 1.09000 * 109.58525 * 293.56903 * 16 6 5 44 44 H 1.09007 * 109.56547 * 185.55856 * 17 16 6 45 45 H 1.08993 * 109.38945 * 65.51760 * 17 16 6 46 46 H 0.96996 * 119.99918 * 335.00223 * 20 18 3 47 47 H 0.97002 * 120.00229 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9817 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2415 3.4656 1.3494 7 6 1.4814 4.5580 1.5629 8 8 0.2946 4.4360 1.8026 9 6 2.0848 5.8938 1.5065 10 16 3.5653 6.4001 2.3171 11 6 3.3950 7.9719 1.6665 12 6 4.3492 9.1122 1.9114 13 7 2.3304 8.0438 0.9339 14 6 1.6031 6.9607 0.8210 15 6 0.3372 6.9060 0.0053 16 6 3.6913 3.5904 1.1466 17 6 4.0740 2.8881 -0.1549 18 6 3.5654 1.4449 -0.1217 19 1 3.8573 0.9360 -1.0403 20 7 4.1480 0.7485 1.0280 21 6 5.3861 0.1727 0.9244 22 1 5.9333 0.2324 -0.0048 23 6 5.9378 -0.4876 2.0136 24 7 5.2711 -0.5600 3.1461 25 14 7.6270 -1.2724 1.8725 26 1 8.6657 -0.2847 2.2606 27 1 7.7025 -2.4502 2.7738 28 1 7.8557 -1.7064 0.4708 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.9908 1.5397 2.1547 35 1 0.5497 2.2172 1.3565 36 1 4.0319 9.6685 2.7933 37 1 5.3527 8.7181 2.0720 38 1 4.3533 9.7748 1.0459 39 1 0.5761 6.6130 -1.0170 40 1 -0.3454 6.1771 0.4422 41 1 -0.1349 7.8885 0.0007 42 1 3.9622 4.6444 1.0848 43 1 4.2182 3.1239 1.9789 44 1 5.1584 2.8893 -0.2651 45 1 3.6222 3.4137 -0.9960 46 1 3.6567 0.6952 1.8626 47 1 5.6564 -1.0217 3.9072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037969104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:37 Heat of formation + Delta-G solvation = -5.005419 kcal Electronic energy + Delta-G solvation = -28161.713797 eV Core-core repulsion = 24470.484404 eV Total energy + Delta-G solvation = -3691.229393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.74534 -40.75468 -39.15368 -35.98061 -35.39065 -34.02934 -33.44671 -31.09971 -30.58199 -30.19723 -29.09101 -26.44113 -25.41344 -25.14515 -23.93058 -22.62857 -22.08859 -20.34852 -19.45392 -19.36650 -19.01323 -17.99458 -17.29901 -16.64734 -16.44184 -16.06420 -15.94188 -15.60708 -15.50242 -15.10254 -14.82443 -14.60260 -14.47986 -14.28678 -14.22812 -14.05204 -13.73649 -13.46010 -13.24900 -13.15677 -13.02889 -12.85614 -12.82560 -12.65393 -12.45160 -12.40621 -12.26049 -12.09030 -11.85464 -11.60539 -11.46172 -11.27966 -11.14756 -10.86914 -10.76852 -10.34047 -9.80230 -9.65399 -8.91784 -7.87281 -5.13722 -0.74639 0.03717 0.48462 1.36706 1.50562 1.51550 1.58923 1.71974 1.97863 2.60863 2.97487 3.38691 3.46498 3.76472 3.83713 3.89582 3.96429 4.01680 4.04418 4.20262 4.31139 4.42037 4.45219 4.52704 4.54562 4.60956 4.65109 4.65733 4.67352 4.78297 4.83677 4.86366 4.98423 5.01322 5.08128 5.14529 5.19211 5.22901 5.23453 5.24913 5.39330 5.49258 5.59795 5.63598 6.22693 6.34041 6.54974 6.89427 7.42067 8.17044 8.41223 9.35853 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.004025 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.364684 B = 6955.018067 C = 8676.060455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.092 4.092 4 H 0.086 0.914 5 C 0.126 3.874 6 N -0.591 5.591 7 C 0.597 3.403 8 O -0.562 6.562 9 C -0.325 4.325 10 S 0.192 5.808 11 C 0.061 3.939 12 C -0.082 4.082 13 N -0.497 5.497 14 C 0.135 3.865 15 C -0.088 4.088 16 C 0.113 3.887 17 C -0.140 4.140 18 C 0.173 3.827 19 H 0.052 0.948 20 N -0.723 5.723 21 C -0.227 4.227 22 H 0.076 0.924 23 C -0.070 4.070 24 N -0.968 5.968 25 Si 0.961 3.039 26 H -0.290 1.290 27 H -0.303 1.303 28 H -0.272 1.272 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.373 0.627 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 16.956 -6.404 18.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.142 4.142 3 C -0.111 4.111 4 H 0.105 0.895 5 C 0.004 3.996 6 N -0.322 5.322 7 C 0.384 3.616 8 O -0.443 6.443 9 C -0.448 4.448 10 S 0.450 5.550 11 C -0.214 4.214 12 C -0.142 4.142 13 N -0.213 5.213 14 C -0.002 4.002 15 C -0.147 4.147 16 C -0.010 4.010 17 C -0.181 4.181 18 C 0.064 3.936 19 H 0.070 0.930 20 N -0.364 5.364 21 C -0.359 4.359 22 H 0.094 0.906 23 C -0.262 4.262 24 N -0.619 5.619 25 Si 0.792 3.208 26 H -0.218 1.218 27 H -0.231 1.231 28 H -0.197 1.197 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.207 0.793 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.539 16.844 -5.921 18.422 hybrid contribution 0.173 -0.951 0.267 1.003 sum -4.366 15.892 -5.654 17.424 Atomic orbital electron populations 1.21792 0.94693 1.01991 1.01920 1.21331 0.96101 0.94884 1.01923 1.21670 0.95833 0.96658 0.96975 0.89529 1.21629 0.98831 0.80998 0.98156 1.48043 1.08889 1.06307 1.68920 1.16980 0.85421 0.82831 0.76381 1.90750 1.16171 1.86482 1.50889 1.25244 1.04952 1.00158 1.14489 1.84244 1.18678 1.05455 1.46627 1.28224 0.96962 1.00361 0.95858 1.20773 0.95572 0.92563 1.05306 1.66160 1.06190 1.28600 1.20335 1.20768 0.97626 0.85536 0.96291 1.20570 0.90967 1.04498 0.98627 1.21815 0.78608 1.01150 0.99402 1.22323 1.01686 0.98013 0.96085 1.20436 0.91082 0.91059 0.90983 0.93036 1.42576 1.18259 1.64255 1.11358 1.19559 0.94217 1.25257 0.96829 0.90639 1.25346 1.01639 1.03137 0.96078 1.69801 1.39495 1.49761 1.02868 0.85311 0.80963 0.77419 0.77082 1.21756 1.23059 1.19705 0.93201 0.91722 0.92136 0.91731 0.93609 0.92923 0.89093 0.87407 0.87710 0.87968 0.89144 0.90476 0.88927 0.89355 0.92168 0.91054 0.90987 0.79318 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.67 71.98 0.70 -3.02 16 2 C -0.10 -3.22 5.19 30.59 0.16 -3.06 16 3 C -0.09 -2.86 2.14 -10.72 -0.02 -2.89 16 4 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 5 C 0.13 4.28 5.02 86.36 0.43 4.71 16 6 N -0.59 -19.68 2.98 -824.46 -2.46 -22.13 16 7 C 0.60 20.21 7.20 86.45 0.62 20.84 16 8 O -0.56 -21.54 15.00 -4.30 -0.06 -21.61 16 9 C -0.32 -9.52 5.38 23.88 0.13 -9.39 16 10 S 0.19 4.51 20.30 -56.49 -1.15 3.37 16 11 C 0.06 1.24 7.39 88.46 0.65 1.89 16 12 C -0.08 -0.89 10.46 71.23 0.75 -0.15 16 13 N -0.50 -12.37 10.50 -178.29 -1.87 -14.24 16 14 C 0.14 3.67 6.79 42.09 0.29 3.95 16 15 C -0.09 -2.03 10.08 71.24 0.72 -1.31 16 16 C 0.11 3.67 5.68 86.22 0.49 4.16 16 17 C -0.14 -4.46 5.76 30.53 0.18 -4.28 16 18 C 0.17 6.20 2.53 45.02 0.11 6.31 16 19 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 20 N -0.72 -32.89 3.72 -322.80 -1.20 -34.09 16 21 C -0.23 -11.59 9.93 84.03 0.83 -10.75 16 22 H 0.08 3.72 7.83 -2.91 -0.02 3.69 16 23 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 24 N -0.97 -56.86 13.06 21.65 0.28 -56.57 16 25 Si 0.96 44.48 29.55 68.60 2.03 46.51 16 26 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 28 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 29 H 0.05 1.30 6.70 -2.38 -0.02 1.29 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.05 1.71 7.69 -2.39 -0.02 1.69 16 34 H 0.05 2.06 6.64 -2.38 -0.02 2.04 16 35 H 0.09 3.05 5.75 -2.39 -0.01 3.04 16 36 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 2.04 6.44 -2.39 -0.02 2.02 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.09 2.52 4.20 -13.16 -0.06 2.47 16 43 H 0.06 2.32 7.74 -2.39 -0.02 2.31 16 44 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 45 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.37 18.68 5.94 -92.71 -0.55 18.12 16 47 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -65.40 380.04 2.46 -62.94 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.39 Total: 32.15 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 6.50 Total: 3.68 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -5.25 Total: -127.03 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.06 Total: -21.61 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -1.15 Total: 3.37 kcal Total: -65.40 2.46 -62.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037969104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.934 kcal (2) G-P(sol) polarization free energy of solvation -65.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds