Wall clock time and date at job start Tue Mar 31 2020 19:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53012 * 109.46919 * 2 1 4 4 H 1.09005 * 109.49224 * 305.06141 * 3 2 1 5 5 C 1.53183 * 109.52435 * 65.14311 * 3 2 1 6 6 N 1.46926 * 108.77510 * 174.60531 * 5 3 2 7 7 C 1.34771 * 120.63184 * 126.41542 * 6 5 3 8 8 O 1.21688 * 120.00351 * 354.35744 * 7 6 5 9 9 C 1.46685 * 119.99966 * 174.36015 * 7 6 5 10 10 S 1.76213 * 126.13198 * 318.81768 * 9 7 6 11 11 C 1.70949 * 90.31697 * 179.97438 * 10 9 7 12 12 C 1.50699 * 124.80652 * 180.02562 * 11 10 9 13 13 N 1.29431 * 110.38846 * 0.02562 * 11 10 9 14 14 C 1.30942 * 117.36759 * 359.73444 * 13 11 10 15 15 C 1.50692 * 122.90821 * 180.30485 * 14 13 11 16 16 C 1.46921 * 118.73563 * 306.38952 * 6 5 3 17 17 C 1.53194 * 108.77592 * 53.61077 * 16 6 5 18 18 C 1.53037 * 109.31132 * 305.36202 * 17 16 6 19 19 H 1.09002 * 109.44755 * 301.35073 * 18 17 16 20 20 N 1.46497 * 109.45866 * 181.38432 * 18 17 16 21 21 C 1.36940 * 120.00057 * 84.93254 * 20 18 17 22 22 H 1.08004 * 119.99866 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00124 * 179.97438 * 21 20 18 24 24 N 1.31620 * 120.00175 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00128 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47368 * 89.99986 * 25 23 21 27 27 H 1.48509 * 109.47019 * 329.99881 * 25 23 21 28 28 H 1.48500 * 109.46982 * 210.00433 * 25 23 21 29 29 H 1.09005 * 109.46872 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47413 * 300.00218 * 1 2 3 31 31 H 1.09003 * 109.47504 * 60.00031 * 1 2 3 32 32 H 1.08994 * 109.47623 * 239.99751 * 2 1 3 33 33 H 1.09003 * 109.47053 * 119.99343 * 2 1 3 34 34 H 1.09000 * 109.58864 * 294.39401 * 5 3 2 35 35 H 1.09006 * 109.58684 * 54.81704 * 5 3 2 36 36 H 1.09006 * 109.46506 * 89.99953 * 12 11 10 37 37 H 1.08993 * 109.47370 * 210.00335 * 12 11 10 38 38 H 1.08998 * 109.47193 * 330.00510 * 12 11 10 39 39 H 1.09005 * 109.47168 * 270.19011 * 15 14 13 40 40 H 1.08994 * 109.47269 * 30.18897 * 15 14 13 41 41 H 1.08997 * 109.47106 * 150.19172 * 15 14 13 42 42 H 1.09002 * 109.58982 * 173.39620 * 16 6 5 43 43 H 1.09005 * 109.59061 * 293.67898 * 16 6 5 44 44 H 1.08998 * 109.49889 * 185.41212 * 17 16 6 45 45 H 1.08999 * 109.49426 * 65.31343 * 17 16 6 46 46 H 0.96996 * 120.00246 * 264.93242 * 20 18 17 47 47 H 0.97000 * 119.99580 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9823 -0.8411 5 6 1.6384 2.1276 1.3100 6 7 2.2448 3.4653 1.3494 7 6 1.4854 4.5574 1.5662 8 8 0.2746 4.4538 1.6293 9 6 2.1184 5.8709 1.7261 10 16 3.5909 6.2113 2.6323 11 6 3.4697 7.8672 2.2255 12 6 4.4436 8.9328 2.6583 13 7 2.4232 8.0763 1.4932 14 6 1.6779 7.0407 1.1988 15 6 0.4365 7.1401 0.3504 16 6 3.6949 3.5897 1.1485 17 6 4.0734 2.8883 -0.1597 18 6 3.5651 1.4452 -0.1257 19 1 4.0008 0.9270 0.7285 20 7 3.9541 0.7615 -1.3616 21 6 5.1923 0.1858 -1.4651 22 1 5.8819 0.2355 -0.6353 23 6 5.5607 -0.4624 -2.6359 24 7 4.7202 -0.5234 -3.6469 25 14 7.2495 -1.2484 -2.7767 26 1 7.1803 -2.6571 -2.3120 27 1 8.2168 -0.4970 -1.9369 28 1 7.6941 -1.2156 -4.1932 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 0.5531 2.2168 1.3580 35 1 1.9964 1.5390 2.1548 36 1 5.2371 9.0226 1.9164 37 1 3.9224 9.8856 2.7502 38 1 4.8756 8.6606 3.6213 39 1 -0.4256 7.3330 0.9890 40 1 0.5490 7.9555 -0.3640 41 1 0.2879 6.2037 -0.1873 42 1 3.9666 4.6436 1.0899 43 1 4.2206 3.1226 1.9814 44 1 5.1575 2.8896 -0.2728 45 1 3.6189 3.4144 -0.9992 46 1 3.3347 0.7166 -2.1067 47 1 3.8431 -0.1156 -3.5736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037969106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:41 Heat of formation + Delta-G solvation = 10.616494 kcal Electronic energy + Delta-G solvation = -27760.952056 eV Core-core repulsion = 24070.400080 eV Total energy + Delta-G solvation = -3690.551976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.67879 -39.70930 -37.83051 -34.96044 -34.05371 -33.24104 -31.88956 -29.72433 -29.49417 -29.30052 -27.83595 -24.93926 -23.95248 -23.23709 -22.96560 -21.41825 -20.94370 -19.74420 -18.59281 -18.23859 -17.32269 -16.96216 -16.23853 -15.59620 -15.16085 -15.00253 -14.62117 -14.22975 -14.11660 -13.74464 -13.64806 -13.55173 -13.51804 -13.35888 -13.22042 -12.90334 -12.80894 -12.45251 -12.40003 -12.19299 -11.93795 -11.76808 -11.57215 -11.41779 -10.99339 -10.77095 -10.63979 -10.38813 -10.29131 -10.21060 -10.05233 -9.91197 -9.86807 -9.48883 -9.20844 -8.98037 -8.86690 -8.59669 -7.07016 -6.13131 -3.13596 0.09496 0.89654 1.31792 2.29267 2.77195 3.05928 3.48690 3.53084 3.67087 3.71523 4.41826 4.59536 4.62696 4.85979 4.91857 4.99193 5.05556 5.09099 5.13038 5.22508 5.33426 5.40818 5.44759 5.50821 5.53878 5.55511 5.57574 5.61559 5.68007 5.77185 5.89296 6.00106 6.03528 6.06761 6.13625 6.23480 6.26560 6.33511 6.42793 6.54236 6.70002 6.80646 6.92703 7.28052 7.42724 7.77069 8.00880 8.72213 9.18501 10.04995 10.20301 11.34993 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.003376 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.548975 B = 8290.878487 C = 9682.206112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.106 4.106 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.598 5.598 7 C 0.597 3.403 8 O -0.528 6.528 9 C -0.293 4.293 10 S 0.177 5.823 11 C 0.049 3.951 12 C -0.080 4.080 13 N -0.477 5.477 14 C 0.139 3.861 15 C -0.080 4.080 16 C 0.098 3.902 17 C -0.148 4.148 18 C 0.189 3.811 19 H 0.050 0.950 20 N -0.731 5.731 21 C -0.331 4.331 22 H 0.064 0.936 23 C -0.043 4.043 24 N -0.943 5.943 25 Si 1.081 2.919 26 H -0.296 1.296 27 H -0.295 1.295 28 H -0.288 1.288 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.367 0.633 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.525 15.073 14.511 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.126 4.126 4 H 0.088 0.912 5 C -0.001 4.001 6 N -0.331 5.331 7 C 0.383 3.617 8 O -0.407 6.407 9 C -0.416 4.416 10 S 0.434 5.566 11 C -0.226 4.226 12 C -0.140 4.140 13 N -0.192 5.192 14 C 0.002 3.998 15 C -0.139 4.139 16 C -0.026 4.026 17 C -0.189 4.189 18 C 0.079 3.921 19 H 0.068 0.932 20 N -0.372 5.372 21 C -0.462 4.462 22 H 0.082 0.918 23 C -0.241 4.241 24 N -0.588 5.588 25 Si 0.912 3.088 26 H -0.223 1.223 27 H -0.222 1.222 28 H -0.215 1.215 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.200 0.800 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.310 14.086 14.154 20.102 hybrid contribution -1.693 1.002 0.290 1.988 sum -4.002 15.088 14.444 21.267 Atomic orbital electron populations 1.21848 0.96597 1.01173 1.01413 1.21434 0.94529 0.95507 1.03378 1.21809 0.97689 0.96336 0.96776 0.91209 1.21800 0.99571 0.80722 0.97979 1.48028 1.08680 1.06566 1.69782 1.16735 0.86121 0.81959 0.76912 1.90807 1.13000 1.85238 1.51629 1.25405 1.03179 0.99619 1.13435 1.84043 1.20697 1.03725 1.48094 1.27450 0.97681 0.98828 0.98666 1.20517 0.96015 0.95518 1.01985 1.66057 1.05030 1.32868 1.15292 1.20537 0.97105 0.85285 0.96830 1.20442 0.91779 1.03640 0.98036 1.22134 0.79305 1.01433 0.99709 1.22646 1.02380 0.99116 0.94751 1.20114 0.90642 0.90360 0.90983 0.93226 1.42412 1.16515 1.65593 1.12728 1.20035 0.92415 1.32094 1.01619 0.91778 1.25721 1.05801 1.00208 0.92389 1.70851 1.08328 1.47547 1.32124 0.83223 0.74263 0.75728 0.75615 1.22348 1.22199 1.21450 0.93035 0.93084 0.92965 0.90180 0.92284 0.88799 0.91291 0.89048 0.89009 0.89807 0.89728 0.90429 0.90157 0.90499 0.91022 0.90324 0.92299 0.79952 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.67 37.15 0.36 -1.71 16 2 C -0.11 -1.75 5.31 -26.73 -0.14 -1.89 16 3 C -0.11 -1.71 1.92 -90.50 -0.17 -1.89 16 4 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 5 C 0.12 1.75 5.34 -3.72 -0.02 1.73 16 6 N -0.60 -8.70 2.97 -174.31 -0.52 -9.21 16 7 C 0.60 9.16 7.06 -12.85 -0.09 9.07 16 8 O -0.53 -9.27 15.44 5.20 0.08 -9.19 16 9 C -0.29 -3.99 5.38 -37.09 -0.20 -4.19 16 10 S 0.18 1.83 20.25 -107.50 -2.18 -0.34 16 11 C 0.05 0.50 7.39 -13.29 -0.10 0.40 16 12 C -0.08 -0.49 10.46 36.00 0.38 -0.11 16 13 N -0.48 -6.04 10.50 -7.71 -0.08 -6.12 16 14 C 0.14 1.88 6.79 -83.89 -0.57 1.31 16 15 C -0.08 -0.96 9.63 36.00 0.35 -0.61 16 16 C 0.10 1.34 5.67 -3.71 -0.02 1.32 16 17 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 18 C 0.19 3.54 2.19 -67.89 -0.15 3.39 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 N -0.73 -17.22 4.33 -53.39 -0.23 -17.45 16 21 C -0.33 -8.83 9.93 -15.06 -0.15 -8.98 16 22 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 23 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 24 N -0.94 -28.49 13.70 55.49 0.76 -27.73 16 25 Si 1.08 25.34 29.92 -169.99 -5.09 20.26 16 26 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.30 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.63 6.70 -51.93 -0.35 0.29 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.51 7.21 -51.93 -0.37 1.14 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.39 5.72 -51.93 -0.30 1.09 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.04 7.26 -51.93 -0.38 0.66 16 42 H 0.08 0.98 4.56 -39.07 -0.18 0.80 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.37 9.12 6.34 -40.82 -0.26 8.86 16 47 H 0.26 7.61 6.77 -40.82 -0.28 7.33 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -32.28 382.66 -9.49 -41.77 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.23 Total: 8.36 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -0.78 Total: -6.12 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.07 Total: -60.51 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.09 Total: 20.26 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.18 Total: -0.34 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.28 -9.49 -41.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037969106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.389 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds