Wall clock time and date at job start Tue Mar 31 2020 19:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53012 * 109.46919 * 2 1 4 4 H 1.09005 * 109.49224 * 305.06141 * 3 2 1 5 5 C 1.53183 * 109.52435 * 65.14311 * 3 2 1 6 6 N 1.46926 * 108.77510 * 174.60531 * 5 3 2 7 7 C 1.34771 * 120.63184 * 126.41542 * 6 5 3 8 8 O 1.21688 * 120.00351 * 354.35744 * 7 6 5 9 9 C 1.46685 * 119.99966 * 174.36015 * 7 6 5 10 10 S 1.76213 * 126.13198 * 318.81768 * 9 7 6 11 11 C 1.70949 * 90.31697 * 179.97438 * 10 9 7 12 12 C 1.50699 * 124.80652 * 180.02562 * 11 10 9 13 13 N 1.29431 * 110.38846 * 0.02562 * 11 10 9 14 14 C 1.30942 * 117.36759 * 359.73444 * 13 11 10 15 15 C 1.50692 * 122.90821 * 180.30485 * 14 13 11 16 16 C 1.46921 * 118.73563 * 306.38952 * 6 5 3 17 17 C 1.53194 * 108.77592 * 53.61077 * 16 6 5 18 18 C 1.53037 * 109.31132 * 305.36202 * 17 16 6 19 19 H 1.09002 * 109.44755 * 301.35073 * 18 17 16 20 20 N 1.46497 * 109.45866 * 181.38432 * 18 17 16 21 21 C 1.36940 * 120.00057 * 84.93254 * 20 18 17 22 22 H 1.08004 * 119.99866 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00124 * 179.97438 * 21 20 18 24 24 N 1.31620 * 120.00175 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00128 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47368 * 89.99986 * 25 23 21 27 27 H 1.48509 * 109.47019 * 329.99881 * 25 23 21 28 28 H 1.48500 * 109.46982 * 210.00433 * 25 23 21 29 29 H 1.09005 * 109.46872 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47413 * 300.00218 * 1 2 3 31 31 H 1.09003 * 109.47504 * 60.00031 * 1 2 3 32 32 H 1.08994 * 109.47623 * 239.99751 * 2 1 3 33 33 H 1.09003 * 109.47053 * 119.99343 * 2 1 3 34 34 H 1.09000 * 109.58864 * 294.39401 * 5 3 2 35 35 H 1.09006 * 109.58684 * 54.81704 * 5 3 2 36 36 H 1.09006 * 109.46506 * 89.99953 * 12 11 10 37 37 H 1.08993 * 109.47370 * 210.00335 * 12 11 10 38 38 H 1.08998 * 109.47193 * 330.00510 * 12 11 10 39 39 H 1.09005 * 109.47168 * 270.19011 * 15 14 13 40 40 H 1.08994 * 109.47269 * 30.18897 * 15 14 13 41 41 H 1.08997 * 109.47106 * 150.19172 * 15 14 13 42 42 H 1.09002 * 109.58982 * 173.39620 * 16 6 5 43 43 H 1.09005 * 109.59061 * 293.67898 * 16 6 5 44 44 H 1.08998 * 109.49889 * 185.41212 * 17 16 6 45 45 H 1.08999 * 109.49426 * 65.31343 * 17 16 6 46 46 H 0.96996 * 120.00246 * 264.93242 * 20 18 17 47 47 H 0.97000 * 119.99580 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9823 -0.8411 5 6 1.6384 2.1276 1.3100 6 7 2.2448 3.4653 1.3494 7 6 1.4854 4.5574 1.5662 8 8 0.2746 4.4538 1.6293 9 6 2.1184 5.8709 1.7261 10 16 3.5909 6.2113 2.6323 11 6 3.4697 7.8672 2.2255 12 6 4.4436 8.9328 2.6583 13 7 2.4232 8.0763 1.4932 14 6 1.6779 7.0407 1.1988 15 6 0.4365 7.1401 0.3504 16 6 3.6949 3.5897 1.1485 17 6 4.0734 2.8883 -0.1597 18 6 3.5651 1.4452 -0.1257 19 1 4.0008 0.9270 0.7285 20 7 3.9541 0.7615 -1.3616 21 6 5.1923 0.1858 -1.4651 22 1 5.8819 0.2355 -0.6353 23 6 5.5607 -0.4624 -2.6359 24 7 4.7202 -0.5234 -3.6469 25 14 7.2495 -1.2484 -2.7767 26 1 7.1803 -2.6571 -2.3120 27 1 8.2168 -0.4970 -1.9369 28 1 7.6941 -1.2156 -4.1932 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 0.5531 2.2168 1.3580 35 1 1.9964 1.5390 2.1548 36 1 5.2371 9.0226 1.9164 37 1 3.9224 9.8856 2.7502 38 1 4.8756 8.6606 3.6213 39 1 -0.4256 7.3330 0.9890 40 1 0.5490 7.9555 -0.3640 41 1 0.2879 6.2037 -0.1873 42 1 3.9666 4.6436 1.0899 43 1 4.2206 3.1226 1.9814 44 1 5.1575 2.8896 -0.2728 45 1 3.6189 3.4144 -0.9992 46 1 3.3347 0.7166 -2.1067 47 1 3.8431 -0.1156 -3.5736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037969106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:40 Heat of formation + Delta-G solvation = -9.178937 kcal Electronic energy + Delta-G solvation = -27761.810450 eV Core-core repulsion = 24070.400080 eV Total energy + Delta-G solvation = -3691.410370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.76688 -40.77698 -39.17334 -36.50107 -35.55123 -34.06406 -33.57091 -31.03298 -30.73149 -30.24499 -29.04202 -26.46830 -25.28288 -24.76111 -23.93854 -22.63486 -22.22912 -21.10525 -19.68816 -19.33315 -19.15942 -18.05843 -17.40396 -16.75531 -16.56715 -16.28067 -15.85010 -15.61883 -15.40154 -15.26913 -14.92778 -14.68346 -14.58076 -14.42421 -14.28689 -14.06816 -13.66152 -13.58209 -13.40366 -13.23798 -13.12422 -12.94543 -12.76228 -12.60297 -12.50281 -12.48266 -12.22519 -11.87997 -11.74603 -11.64750 -11.48983 -11.35200 -11.07753 -10.89754 -10.80394 -10.40162 -9.91231 -9.70236 -9.07399 -8.33914 -5.27965 -0.80405 0.03048 0.44389 1.31630 1.59839 1.64877 1.70057 1.83430 1.95461 2.73417 2.93787 3.32659 3.43643 3.61981 3.64464 3.84710 3.85922 3.89033 3.97675 4.08784 4.17583 4.30156 4.35022 4.49760 4.51963 4.54865 4.57871 4.58254 4.65445 4.66463 4.68076 4.74837 4.81331 4.89994 4.93518 5.04441 5.05168 5.18153 5.18995 5.23373 5.34177 5.41171 5.52475 5.64708 6.12283 6.52986 6.53369 6.84280 7.12359 8.02433 8.16029 9.17706 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.003376 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.548975 B = 8290.878487 C = 9682.206112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.094 4.094 4 H 0.050 0.950 5 C 0.127 3.873 6 N -0.600 5.600 7 C 0.598 3.402 8 O -0.557 6.557 9 C -0.331 4.331 10 S 0.220 5.780 11 C 0.057 3.943 12 C -0.083 4.083 13 N -0.503 5.503 14 C 0.134 3.866 15 C -0.079 4.079 16 C 0.108 3.892 17 C -0.138 4.138 18 C 0.185 3.815 19 H 0.051 0.949 20 N -0.742 5.742 21 C -0.320 4.320 22 H 0.070 0.930 23 C -0.106 4.106 24 N -0.980 5.980 25 Si 1.126 2.874 26 H -0.287 1.287 27 H -0.270 1.270 28 H -0.299 1.299 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.039 0.961 46 H 0.356 0.644 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 16.335 17.109 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.114 4.114 4 H 0.069 0.931 5 C 0.005 3.995 6 N -0.331 5.331 7 C 0.385 3.615 8 O -0.438 6.438 9 C -0.455 4.455 10 S 0.478 5.522 11 C -0.217 4.217 12 C -0.143 4.143 13 N -0.219 5.219 14 C -0.004 4.004 15 C -0.138 4.138 16 C -0.016 4.016 17 C -0.179 4.179 18 C 0.077 3.923 19 H 0.069 0.931 20 N -0.383 5.383 21 C -0.451 4.451 22 H 0.088 0.912 23 C -0.297 4.297 24 N -0.628 5.628 25 Si 0.952 3.048 26 H -0.214 1.214 27 H -0.195 1.195 28 H -0.225 1.225 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.188 0.812 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.866 15.374 16.818 22.802 hybrid contribution -2.131 0.718 -0.443 2.292 sum -2.997 16.092 16.374 23.153 Atomic orbital electron populations 1.21784 0.94626 1.02074 1.01842 1.21340 0.96240 0.94805 1.01934 1.21653 0.95691 0.96696 0.97381 0.93122 1.21743 0.99677 0.80862 0.97199 1.48061 1.08941 1.06501 1.69627 1.16958 0.85817 0.82580 0.76152 1.90778 1.14257 1.85800 1.52932 1.25328 1.05624 0.98766 1.15759 1.83770 1.18290 1.03451 1.46714 1.28245 0.97090 0.99790 0.96585 1.20789 0.95450 0.94462 1.03600 1.66137 1.06175 1.32698 1.16879 1.20747 0.97375 0.85635 0.96674 1.20423 0.91884 1.03231 0.98214 1.22105 0.79012 1.02090 0.98387 1.22433 1.01438 0.97847 0.96182 1.20336 0.92373 0.90793 0.88818 0.93123 1.42597 1.15553 1.66127 1.14006 1.20366 0.93236 1.30298 1.01216 0.91205 1.27056 1.08549 1.01532 0.92529 1.70964 1.08492 1.49825 1.33535 0.82630 0.71175 0.75644 0.75343 1.21441 1.19546 1.22548 0.91929 0.91508 0.93641 0.93800 0.91403 0.88863 0.89233 0.87462 0.88330 0.87249 0.89336 0.89262 0.91671 0.89155 0.88638 0.91233 0.94188 0.81184 0.94704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.67 71.98 0.70 -3.17 16 2 C -0.10 -3.33 5.31 30.60 0.16 -3.17 16 3 C -0.09 -3.05 1.92 -10.72 -0.02 -3.07 16 4 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 5 C 0.13 3.51 5.34 86.36 0.46 3.97 16 6 N -0.60 -16.69 2.97 -823.62 -2.45 -19.13 16 7 C 0.60 17.93 7.06 86.45 0.61 18.54 16 8 O -0.56 -19.51 15.44 -4.31 -0.07 -19.57 16 9 C -0.33 -8.65 5.38 23.88 0.13 -8.52 16 10 S 0.22 3.96 20.25 -56.49 -1.14 2.82 16 11 C 0.06 1.02 7.39 88.46 0.65 1.67 16 12 C -0.08 -0.71 10.46 71.24 0.75 0.04 16 13 N -0.50 -11.92 10.50 -178.29 -1.87 -13.79 16 14 C 0.13 3.49 6.79 42.09 0.29 3.78 16 15 C -0.08 -1.89 9.63 71.23 0.69 -1.20 16 16 C 0.11 2.74 5.67 86.36 0.49 3.23 16 17 C -0.14 -4.61 5.66 30.67 0.17 -4.43 16 18 C 0.19 6.90 2.19 45.02 0.10 7.00 16 19 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 20 N -0.74 -35.76 4.33 -322.82 -1.40 -37.16 16 21 C -0.32 -17.15 9.93 84.03 0.83 -16.32 16 22 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 23 C -0.11 -5.99 5.50 84.86 0.47 -5.53 16 24 N -0.98 -60.89 13.70 21.65 0.30 -60.59 16 25 Si 1.13 51.04 29.92 68.60 2.05 53.09 16 26 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 29 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.07 1.56 6.70 -2.39 -0.02 1.55 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 1.71 7.21 -2.39 -0.02 1.70 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.09 2.65 5.72 -2.39 -0.01 2.64 16 35 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.06 1.74 7.26 -2.39 -0.02 1.72 16 42 H 0.09 2.10 4.56 -10.56 -0.05 2.05 16 43 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 44 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.36 18.57 6.34 -92.71 -0.59 17.98 16 47 H 0.24 15.12 6.77 -92.71 -0.63 14.49 16 Total: -1.00 -71.50 382.66 2.39 -69.11 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.50 Total: 32.42 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 6.47 Total: -7.19 kcal Atomic # 7 Polarization: -125.26 SS G_CDS: -5.42 Total: -130.68 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.07 Total: -19.57 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.09 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.14 Total: 2.82 kcal Total: -71.50 2.39 -69.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037969106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.929 kcal (2) G-P(sol) polarization free energy of solvation -71.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds