Wall clock time and date at job start Tue Mar 31 2020 19:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47232 * 2 1 4 4 H 1.08999 * 109.50403 * 55.06411 * 3 2 1 5 5 C 1.53189 * 109.49914 * 294.99901 * 3 2 1 6 6 N 1.46929 * 108.78142 * 185.41552 * 5 3 2 7 7 C 1.34778 * 120.63033 * 233.58694 * 6 5 3 8 8 O 1.21618 * 119.99840 * 5.67170 * 7 6 5 9 9 C 1.47251 * 119.99578 * 185.66913 * 7 6 5 10 10 N 1.30561 * 125.53987 * 221.02092 * 9 7 6 11 11 C 1.30705 * 115.90427 * 180.02562 * 10 9 7 12 12 C 1.50708 * 122.10333 * 179.97438 * 11 10 9 13 13 C 1.34228 * 115.78591 * 0.25173 * 11 10 9 14 14 C 1.50702 * 125.45316 * 179.74539 * 13 11 10 15 15 S 1.71073 * 109.09275 * 359.62754 * 13 11 10 16 16 C 1.46922 * 118.73671 * 53.85776 * 6 5 3 17 17 C 1.53627 * 108.54574 * 306.09776 * 16 6 5 18 18 C 1.53038 * 109.50080 * 175.16011 * 3 2 1 19 19 H 1.08998 * 109.46031 * 301.33899 * 18 3 2 20 20 N 1.46502 * 109.45887 * 61.29107 * 18 3 2 21 21 C 1.36935 * 120.00359 * 205.00238 * 20 18 3 22 22 H 1.08006 * 120.00030 * 0.02562 * 21 20 18 23 23 C 1.38817 * 120.00228 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99581 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00057 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47050 * 59.99688 * 25 23 21 27 27 H 1.48497 * 109.46778 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46984 * 299.99747 * 25 23 21 29 29 H 1.08996 * 109.47300 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47319 * 300.00242 * 1 2 3 31 31 H 1.08991 * 109.47002 * 59.99990 * 1 2 3 32 32 H 1.09000 * 109.46819 * 239.99587 * 2 1 3 33 33 H 1.09005 * 109.46867 * 120.00036 * 2 1 3 34 34 H 1.08998 * 109.58834 * 65.62626 * 5 3 2 35 35 H 1.09004 * 109.58847 * 305.19984 * 5 3 2 36 36 H 1.09000 * 109.47136 * 90.03060 * 12 11 10 37 37 H 1.09006 * 109.46552 * 210.02635 * 12 11 10 38 38 H 1.08995 * 109.47374 * 330.02312 * 12 11 10 39 39 H 1.09001 * 109.46932 * 90.00732 * 14 13 11 40 40 H 1.08998 * 109.47029 * 210.00226 * 14 13 11 41 41 H 1.08993 * 109.47554 * 330.00597 * 14 13 11 42 42 H 1.08997 * 109.58874 * 65.92700 * 16 6 5 43 43 H 1.08995 * 109.58684 * 186.35663 * 16 6 5 44 44 H 1.09004 * 109.63095 * 294.86837 * 17 16 6 45 45 H 1.08998 * 109.43361 * 174.72601 * 17 16 6 46 46 H 0.97006 * 119.99934 * 25.00624 * 20 18 3 47 47 H 0.97001 * 119.99516 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9816 0.8423 5 6 1.6351 2.1279 -1.3087 6 7 2.2416 3.4656 -1.3494 7 6 1.4817 4.5578 -1.5639 8 8 0.2714 4.4545 -1.6231 9 6 2.1170 5.8763 -1.7264 10 7 1.6803 6.9969 -1.2184 11 6 2.3933 8.0599 -1.4829 12 6 2.0170 9.4253 -0.9678 13 6 3.4786 7.8598 -2.2471 14 6 4.4466 8.9276 -2.6874 15 16 3.5888 6.1981 -2.6382 16 6 3.6930 3.5892 -1.1579 17 6 4.0742 2.8879 0.1547 18 6 3.5655 1.4449 0.1217 19 1 3.8574 0.9358 1.0403 20 7 4.1480 0.7483 -1.0280 21 6 5.3861 0.1725 -0.9244 22 1 5.9331 0.2314 0.0050 23 6 5.9382 -0.4871 -2.0140 24 7 5.2713 -0.5594 -3.1465 25 14 7.6268 -1.2732 -1.8725 26 1 7.6052 -2.3031 -0.8028 27 1 7.9862 -1.9100 -3.1650 28 1 8.6310 -0.2320 -1.5370 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.5498 2.2173 -1.3539 35 1 1.9908 1.5397 -2.1547 36 1 2.4864 9.5898 0.0021 37 1 2.3587 10.1855 -1.6704 38 1 0.9340 9.4883 -0.8627 39 1 5.2438 9.0217 -1.9501 40 1 4.8743 8.6547 -3.6522 41 1 3.9219 9.8785 -2.7785 42 1 4.2131 3.1176 -1.9916 43 1 3.9659 4.6430 -1.1033 44 1 3.6220 3.4138 0.9956 45 1 5.1586 2.8891 0.2649 46 1 3.6566 0.6950 -1.8627 47 1 5.6573 -1.0199 -3.9080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037972796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:11 Heat of formation + Delta-G solvation = 14.388600 kcal Electronic energy + Delta-G solvation = -27910.576244 eV Core-core repulsion = 24220.187839 eV Total energy + Delta-G solvation = -3690.388405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.50241 -39.66170 -37.75814 -34.57002 -33.80192 -33.38699 -31.74550 -30.08249 -29.51408 -28.80449 -26.82980 -25.30619 -24.25611 -23.78059 -23.48254 -20.90515 -20.48671 -18.90617 -18.59276 -17.96725 -17.40678 -16.93527 -16.11842 -15.43409 -15.06818 -14.67699 -14.54721 -14.14952 -14.03616 -13.75279 -13.48169 -13.39303 -13.30764 -13.21926 -13.10340 -12.96564 -12.61786 -12.51222 -12.30582 -12.22658 -11.83385 -11.45268 -11.30575 -11.11517 -10.99482 -10.83590 -10.78361 -10.43958 -10.30896 -10.26010 -10.20309 -9.82710 -9.61848 -9.58685 -9.42182 -8.96128 -8.64975 -8.34754 -7.01403 -5.82047 -3.10667 0.22705 1.02146 1.52932 2.33376 2.76841 3.21989 3.39688 3.45255 3.45886 4.12331 4.54675 4.60795 4.67463 4.77024 5.05149 5.10269 5.19586 5.22405 5.29714 5.39112 5.43236 5.47599 5.52449 5.55868 5.55988 5.66046 5.68162 5.75595 5.77730 5.89022 6.01908 6.05717 6.10629 6.13181 6.30260 6.33489 6.39296 6.52459 6.56205 6.66721 6.72289 6.88838 6.95721 7.39136 7.57991 7.65617 8.14037 8.36298 9.48101 10.03884 10.39316 11.40156 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.003836 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.611378 B = 7297.909009 C = 9018.400758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.589 5.589 7 C 0.595 3.405 8 O -0.517 6.517 9 C 0.003 3.997 10 N -0.405 5.405 11 C 0.046 3.954 12 C -0.078 4.078 13 C -0.250 4.250 14 C -0.076 4.076 15 S 0.206 5.794 16 C 0.102 3.898 17 C -0.147 4.147 18 C 0.178 3.822 19 H 0.054 0.946 20 N -0.718 5.718 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.610 16.099 2.959 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.124 4.124 4 H 0.087 0.913 5 C 0.000 4.000 6 N -0.321 5.321 7 C 0.377 3.623 8 O -0.393 6.393 9 C -0.273 4.273 10 N -0.121 5.121 11 C -0.091 4.091 12 C -0.137 4.137 13 C -0.372 4.372 14 C -0.134 4.134 15 S 0.463 5.537 16 C -0.021 4.021 17 C -0.188 4.188 18 C 0.068 3.932 19 H 0.072 0.928 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.206 4.206 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.889 15.274 2.678 15.987 hybrid contribution 0.776 0.421 0.068 0.886 sum -3.113 15.695 2.746 16.235 Atomic orbital electron populations 1.21861 0.96756 1.01085 1.01439 1.21412 0.94317 0.95513 1.03480 1.21764 0.97427 0.96278 0.96905 0.91310 1.21817 0.98982 0.80378 0.98871 1.47965 1.08873 1.06223 1.69086 1.16711 0.86105 0.81500 0.77939 1.90805 1.12864 1.84792 1.50810 1.27299 0.97653 0.97488 1.04909 1.66539 1.28684 0.96973 1.19894 1.20162 0.92655 0.96082 1.00183 1.20382 1.02916 0.89369 1.01008 1.25536 1.03406 1.01351 1.06909 1.20290 0.96481 0.95012 1.01654 1.84310 1.22818 0.98664 1.47925 1.22160 0.78761 1.00197 1.00971 1.22590 1.01994 0.99282 0.94948 1.20230 0.89718 0.90492 0.92778 0.92842 1.42471 1.19049 1.64016 1.10545 1.19170 0.93556 1.27202 0.97087 0.91288 1.24689 0.98487 1.01385 0.96017 1.69634 1.38095 1.48024 1.02233 0.86327 0.84380 0.79215 0.76580 1.21372 1.21812 1.21373 0.93115 0.93310 0.92759 0.90401 0.91907 0.89157 0.90093 0.90672 0.90715 0.90578 0.90136 0.90874 0.90074 0.88853 0.91437 0.93120 0.90447 0.78101 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.67 37.16 0.36 -1.71 16 2 C -0.11 -1.70 5.19 -26.74 -0.14 -1.84 16 3 C -0.10 -1.67 2.14 -90.51 -0.19 -1.86 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 5 C 0.12 2.02 5.03 -3.71 -0.02 2.00 16 6 N -0.59 -9.85 2.97 -173.84 -0.52 -10.36 16 7 C 0.59 10.61 7.66 -12.60 -0.10 10.51 16 8 O -0.52 -10.60 16.52 5.26 0.09 -10.51 16 9 C 0.00 0.05 6.42 -14.43 -0.09 -0.04 16 10 N -0.41 -6.48 10.62 -7.69 -0.08 -6.56 16 11 C 0.05 0.58 6.68 -84.48 -0.56 0.02 16 12 C -0.08 -0.69 10.02 36.01 0.36 -0.33 16 13 C -0.25 -2.78 6.36 -35.72 -0.23 -3.00 16 14 C -0.08 -0.55 10.04 36.01 0.36 -0.19 16 15 S 0.21 2.61 20.19 -107.50 -2.17 0.44 16 16 C 0.10 1.64 5.42 -3.49 -0.02 1.62 16 17 C -0.15 -2.41 5.80 -26.39 -0.15 -2.57 16 18 C 0.18 3.22 2.53 -67.89 -0.17 3.05 16 19 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 20 N -0.72 -15.89 3.71 -53.38 -0.20 -16.09 16 21 C -0.24 -6.04 9.93 -15.06 -0.15 -6.18 16 22 H 0.07 1.71 7.83 -52.48 -0.41 1.30 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -26.28 13.06 55.49 0.72 -25.55 16 25 Si 0.90 21.28 29.55 -169.99 -5.02 16.26 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.73 6.70 -51.93 -0.35 0.38 16 32 H 0.08 1.40 7.69 -51.93 -0.40 1.00 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.51 5.71 -51.93 -0.30 1.21 16 35 H 0.08 1.45 6.64 -51.93 -0.34 1.11 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.49 6.59 -51.93 -0.34 0.14 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.46 6.64 -51.93 -0.35 0.11 16 42 H 0.09 1.69 7.73 -51.93 -0.40 1.29 16 43 H 0.07 0.98 4.53 -37.88 -0.17 0.81 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.38 9.08 5.94 -40.82 -0.24 8.84 16 47 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -30.39 380.16 -9.37 -39.76 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.08 Total: 7.74 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -0.84 Total: -0.86 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.07 Total: -58.56 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.17 Total: 0.44 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.39 -9.37 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037972796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.147 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds