Wall clock time and date at job start Tue Mar 31 2020 19:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47232 * 2 1 4 4 H 1.08999 * 109.50403 * 55.06411 * 3 2 1 5 5 C 1.53189 * 109.49914 * 294.99901 * 3 2 1 6 6 N 1.46929 * 108.78142 * 185.41552 * 5 3 2 7 7 C 1.34778 * 120.63033 * 233.58694 * 6 5 3 8 8 O 1.21618 * 119.99840 * 5.67170 * 7 6 5 9 9 C 1.47251 * 119.99578 * 185.66913 * 7 6 5 10 10 N 1.30561 * 125.53987 * 221.02092 * 9 7 6 11 11 C 1.30705 * 115.90427 * 180.02562 * 10 9 7 12 12 C 1.50708 * 122.10333 * 179.97438 * 11 10 9 13 13 C 1.34228 * 115.78591 * 0.25173 * 11 10 9 14 14 C 1.50702 * 125.45316 * 179.74539 * 13 11 10 15 15 S 1.71073 * 109.09275 * 359.62754 * 13 11 10 16 16 C 1.46922 * 118.73671 * 53.85776 * 6 5 3 17 17 C 1.53627 * 108.54574 * 306.09776 * 16 6 5 18 18 C 1.53038 * 109.50080 * 175.16011 * 3 2 1 19 19 H 1.08998 * 109.46031 * 301.33899 * 18 3 2 20 20 N 1.46502 * 109.45887 * 61.29107 * 18 3 2 21 21 C 1.36935 * 120.00359 * 205.00238 * 20 18 3 22 22 H 1.08006 * 120.00030 * 0.02562 * 21 20 18 23 23 C 1.38817 * 120.00228 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99581 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00057 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47050 * 59.99688 * 25 23 21 27 27 H 1.48497 * 109.46778 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46984 * 299.99747 * 25 23 21 29 29 H 1.08996 * 109.47300 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47319 * 300.00242 * 1 2 3 31 31 H 1.08991 * 109.47002 * 59.99990 * 1 2 3 32 32 H 1.09000 * 109.46819 * 239.99587 * 2 1 3 33 33 H 1.09005 * 109.46867 * 120.00036 * 2 1 3 34 34 H 1.08998 * 109.58834 * 65.62626 * 5 3 2 35 35 H 1.09004 * 109.58847 * 305.19984 * 5 3 2 36 36 H 1.09000 * 109.47136 * 90.03060 * 12 11 10 37 37 H 1.09006 * 109.46552 * 210.02635 * 12 11 10 38 38 H 1.08995 * 109.47374 * 330.02312 * 12 11 10 39 39 H 1.09001 * 109.46932 * 90.00732 * 14 13 11 40 40 H 1.08998 * 109.47029 * 210.00226 * 14 13 11 41 41 H 1.08993 * 109.47554 * 330.00597 * 14 13 11 42 42 H 1.08997 * 109.58874 * 65.92700 * 16 6 5 43 43 H 1.08995 * 109.58684 * 186.35663 * 16 6 5 44 44 H 1.09004 * 109.63095 * 294.86837 * 17 16 6 45 45 H 1.08998 * 109.43361 * 174.72601 * 17 16 6 46 46 H 0.97006 * 119.99934 * 25.00624 * 20 18 3 47 47 H 0.97001 * 119.99516 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9816 0.8423 5 6 1.6351 2.1279 -1.3087 6 7 2.2416 3.4656 -1.3494 7 6 1.4817 4.5578 -1.5639 8 8 0.2714 4.4545 -1.6231 9 6 2.1170 5.8763 -1.7264 10 7 1.6803 6.9969 -1.2184 11 6 2.3933 8.0599 -1.4829 12 6 2.0170 9.4253 -0.9678 13 6 3.4786 7.8598 -2.2471 14 6 4.4466 8.9276 -2.6874 15 16 3.5888 6.1981 -2.6382 16 6 3.6930 3.5892 -1.1579 17 6 4.0742 2.8879 0.1547 18 6 3.5655 1.4449 0.1217 19 1 3.8574 0.9358 1.0403 20 7 4.1480 0.7483 -1.0280 21 6 5.3861 0.1725 -0.9244 22 1 5.9331 0.2314 0.0050 23 6 5.9382 -0.4871 -2.0140 24 7 5.2713 -0.5594 -3.1465 25 14 7.6268 -1.2732 -1.8725 26 1 7.6052 -2.3031 -0.8028 27 1 7.9862 -1.9100 -3.1650 28 1 8.6310 -0.2320 -1.5370 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.5498 2.2173 -1.3539 35 1 1.9908 1.5397 -2.1547 36 1 2.4864 9.5898 0.0021 37 1 2.3587 10.1855 -1.6704 38 1 0.9340 9.4883 -0.8627 39 1 5.2438 9.0217 -1.9501 40 1 4.8743 8.6547 -3.6522 41 1 3.9219 9.8785 -2.7785 42 1 4.2131 3.1176 -1.9916 43 1 3.9659 4.6430 -1.1033 44 1 3.6220 3.4138 0.9956 45 1 5.1586 2.8891 0.2649 46 1 3.6566 0.6950 -1.8627 47 1 5.6573 -1.0199 -3.9080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037972796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:10 Heat of formation + Delta-G solvation = -3.641058 kcal Electronic energy + Delta-G solvation = -27911.358069 eV Core-core repulsion = 24220.187839 eV Total energy + Delta-G solvation = -3691.170230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73932 -40.82563 -39.18822 -36.03653 -35.38592 -34.28169 -33.43896 -31.07040 -30.87088 -30.18147 -28.01517 -26.30820 -25.67353 -25.22056 -24.97855 -22.26206 -21.65423 -20.20467 -19.70121 -19.25562 -19.15403 -18.21802 -17.42525 -16.68604 -16.50441 -16.12131 -15.87896 -15.58452 -15.44134 -14.94176 -14.82656 -14.68586 -14.42297 -14.14003 -14.06282 -14.01929 -13.82385 -13.69638 -13.40213 -13.14679 -12.94227 -12.83452 -12.79721 -12.65547 -12.46006 -12.31265 -12.14131 -12.01807 -11.84716 -11.70689 -11.51185 -11.44107 -11.15086 -10.86140 -10.77735 -10.39352 -9.83273 -9.58765 -8.90110 -7.85126 -5.11469 -0.82484 -0.03193 0.55081 1.20870 1.52875 1.53442 1.54224 1.59387 1.96200 2.62655 2.98328 3.48066 3.62374 3.75521 3.83394 3.87897 3.94722 3.99645 4.03105 4.18140 4.28793 4.40804 4.45432 4.53586 4.55255 4.64631 4.65707 4.75742 4.75911 4.80219 4.83125 4.92783 4.98357 4.99259 5.03697 5.14217 5.18554 5.22476 5.24131 5.34916 5.38832 5.48315 5.60275 5.64285 6.09343 6.36006 6.51354 6.78957 7.44382 8.18624 8.43602 9.37634 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.003836 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.611378 B = 7297.909009 C = 9018.400758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C -0.093 4.093 4 H 0.083 0.917 5 C 0.125 3.875 6 N -0.587 5.587 7 C 0.595 3.405 8 O -0.554 6.554 9 C -0.042 4.042 10 N -0.427 5.427 11 C 0.023 3.977 12 C -0.075 4.075 13 C -0.224 4.224 14 C -0.080 4.080 15 S 0.223 5.777 16 C 0.110 3.890 17 C -0.140 4.140 18 C 0.174 3.826 19 H 0.053 0.947 20 N -0.723 5.723 21 C -0.228 4.228 22 H 0.075 0.925 23 C -0.068 4.068 24 N -0.966 5.966 25 Si 0.961 3.039 26 H -0.284 1.284 27 H -0.303 1.303 28 H -0.279 1.279 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.374 0.626 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 18.479 4.039 19.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C -0.113 4.113 4 H 0.101 0.899 5 C 0.004 3.996 6 N -0.318 5.318 7 C 0.379 3.621 8 O -0.433 6.433 9 C -0.316 4.316 10 N -0.144 5.144 11 C -0.114 4.114 12 C -0.134 4.134 13 C -0.347 4.347 14 C -0.138 4.138 15 S 0.479 5.521 16 C -0.013 4.013 17 C -0.181 4.181 18 C 0.065 3.935 19 H 0.071 0.929 20 N -0.364 5.364 21 C -0.360 4.360 22 H 0.093 0.907 23 C -0.260 4.260 24 N -0.617 5.617 25 Si 0.792 3.208 26 H -0.211 1.211 27 H -0.230 1.230 28 H -0.205 1.205 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.208 0.792 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.792 17.665 3.813 18.286 hybrid contribution 0.458 -0.180 -0.249 0.552 sum -2.334 17.485 3.564 17.997 Atomic orbital electron populations 1.21801 0.94855 1.01999 1.01853 1.21327 0.95962 0.94757 1.02104 1.21679 0.96003 0.96724 0.96897 0.89891 1.21710 0.98915 0.80444 0.98573 1.47972 1.09026 1.06075 1.68745 1.17007 0.85756 0.82377 0.76944 1.90761 1.14390 1.85618 1.52523 1.26861 0.99989 0.96737 1.08040 1.66536 1.29795 0.97736 1.20354 1.20734 0.93047 0.96646 1.00961 1.20514 1.02636 0.87923 1.02339 1.26111 1.03027 1.01120 1.04473 1.20560 0.96228 0.94499 1.02542 1.84210 1.20739 1.00284 1.46846 1.22072 0.78165 1.01112 0.99927 1.22483 1.01861 0.98017 0.95745 1.20415 0.90887 0.91040 0.91128 0.92926 1.42557 1.18278 1.64234 1.11322 1.19516 0.94235 1.25446 0.96801 0.90676 1.25329 1.01564 1.03065 0.96090 1.69787 1.39466 1.49699 1.02774 0.85400 0.81196 0.78437 0.75811 1.21067 1.22976 1.20542 0.92007 0.92030 0.93154 0.93247 0.91687 0.89166 0.91927 0.89466 0.87800 0.91406 0.88284 0.89818 0.87668 0.91082 0.89592 0.91175 0.90697 0.79186 0.94390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.67 71.98 0.70 -3.17 16 2 C -0.10 -3.22 5.19 30.59 0.16 -3.06 16 3 C -0.09 -2.97 2.14 -10.72 -0.02 -3.00 16 4 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 5 C 0.13 4.29 5.03 86.36 0.43 4.73 16 6 N -0.59 -19.92 2.97 -822.15 -2.44 -22.36 16 7 C 0.59 21.66 7.66 86.61 0.66 22.33 16 8 O -0.55 -23.45 16.52 -4.09 -0.07 -23.52 16 9 C -0.04 -1.34 6.42 87.25 0.56 -0.78 16 10 N -0.43 -13.44 10.62 -178.24 -1.89 -15.33 16 11 C 0.02 0.53 6.68 41.81 0.28 0.81 16 12 C -0.08 -1.14 10.02 71.24 0.71 -0.42 16 13 C -0.22 -4.38 6.36 24.77 0.16 -4.23 16 14 C -0.08 -0.81 10.04 71.24 0.72 -0.10 16 15 S 0.22 5.40 20.19 -56.49 -1.14 4.26 16 16 C 0.11 3.53 5.42 86.51 0.47 4.00 16 17 C -0.14 -4.47 5.80 30.82 0.18 -4.29 16 18 C 0.17 6.23 2.53 45.02 0.11 6.35 16 19 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 20 N -0.72 -32.39 3.71 -322.81 -1.20 -33.59 16 21 C -0.23 -11.52 9.93 84.04 0.83 -10.68 16 22 H 0.08 3.65 7.83 -2.91 -0.02 3.63 16 23 C -0.07 -3.65 5.50 84.86 0.47 -3.19 16 24 N -0.97 -55.89 13.06 21.65 0.28 -55.60 16 25 Si 0.96 44.04 29.55 68.60 2.03 46.07 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 28 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.35 6.70 -2.39 -0.02 1.33 16 32 H 0.05 1.83 7.69 -2.39 -0.02 1.81 16 33 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.09 3.10 5.71 -2.39 -0.01 3.09 16 35 H 0.06 2.38 6.64 -2.39 -0.02 2.36 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 0.92 6.59 -2.38 -0.02 0.90 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.10 0.65 6.64 -2.39 -0.02 0.63 16 42 H 0.07 2.63 7.73 -2.39 -0.02 2.61 16 43 H 0.09 2.44 4.53 -11.33 -0.05 2.39 16 44 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.37 18.33 5.94 -92.70 -0.55 17.78 16 47 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -67.20 380.16 2.39 -64.81 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.40 Total: 29.97 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 6.42 Total: 5.30 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -5.25 Total: -126.88 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.07 Total: -23.52 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -1.14 Total: 4.26 kcal Total: -67.20 2.39 -64.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037972796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.169 kcal (2) G-P(sol) polarization free energy of solvation -67.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds