Wall clock time and date at job start Tue Mar 31 2020 19:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47188 * 2 1 4 4 H 1.08997 * 109.52361 * 305.07957 * 3 2 1 5 5 C 1.53194 * 109.49796 * 65.16153 * 3 2 1 6 6 N 1.46926 * 108.77461 * 174.58658 * 5 3 2 7 7 C 1.34779 * 120.63029 * 126.37341 * 6 5 3 8 8 O 1.21623 * 120.00023 * 354.33471 * 7 6 5 9 9 C 1.47254 * 120.00225 * 174.34713 * 7 6 5 10 10 N 1.30562 * 125.54802 * 140.13991 * 9 7 6 11 11 C 1.30694 * 115.91066 * 179.97438 * 10 9 7 12 12 C 1.50699 * 122.11030 * 180.02562 * 11 10 9 13 13 C 1.34237 * 115.78200 * 359.97438 * 11 10 9 14 14 C 1.50703 * 125.45239 * 179.97438 * 13 11 10 15 15 S 1.71067 * 109.09104 * 359.73047 * 13 11 10 16 16 C 1.46923 * 118.73890 * 306.38828 * 6 5 3 17 17 C 1.53191 * 108.77574 * 53.61248 * 16 6 5 18 18 C 1.53033 * 109.31196 * 305.36418 * 17 16 6 19 19 H 1.09010 * 109.45904 * 301.35781 * 18 17 16 20 20 N 1.46498 * 109.46220 * 181.38756 * 18 17 16 21 21 C 1.36937 * 120.00097 * 84.99881 * 20 18 17 22 22 H 1.07998 * 120.00222 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99926 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00110 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00034 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47079 * 60.00193 * 25 23 21 27 27 H 1.48495 * 109.47264 * 299.99957 * 25 23 21 28 28 H 1.48501 * 109.47231 * 179.97438 * 25 23 21 29 29 H 1.09001 * 109.46590 * 59.99978 * 1 2 3 30 30 H 1.09000 * 109.47318 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47086 * 299.99815 * 1 2 3 32 32 H 1.09003 * 109.47416 * 239.99833 * 2 1 3 33 33 H 1.09002 * 109.47285 * 120.00302 * 2 1 3 34 34 H 1.08999 * 109.58804 * 54.79896 * 5 3 2 35 35 H 1.09001 * 109.70135 * 294.44111 * 5 3 2 36 36 H 1.08999 * 109.47065 * 89.97840 * 12 11 10 37 37 H 1.09002 * 109.47056 * 209.97435 * 12 11 10 38 38 H 1.08997 * 109.47138 * 329.97813 * 12 11 10 39 39 H 1.08999 * 109.46957 * 90.00628 * 14 13 11 40 40 H 1.09002 * 109.47393 * 210.00142 * 14 13 11 41 41 H 1.09002 * 109.47504 * 329.99966 * 14 13 11 42 42 H 1.09001 * 109.58953 * 293.81829 * 16 6 5 43 43 H 1.09008 * 109.58448 * 173.39970 * 16 6 5 44 44 H 1.09000 * 109.49577 * 185.40858 * 17 16 6 45 45 H 1.09002 * 109.52476 * 65.32952 * 17 16 6 46 46 H 0.97002 * 119.99534 * 264.99884 * 20 18 17 47 47 H 0.97005 * 119.99924 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6385 2.1267 1.3105 6 7 2.2451 3.4643 1.3507 7 6 1.4857 4.5565 1.5673 8 8 0.2754 4.4532 1.6291 9 6 2.1212 5.8750 1.7289 10 7 1.6718 6.9992 1.2403 11 6 2.3876 8.0614 1.5000 12 6 1.9980 9.4306 1.0053 13 6 3.4913 7.8561 2.2360 14 6 4.4694 8.9211 2.6606 15 16 3.6060 6.1932 2.6206 16 6 3.6952 3.5887 1.1499 17 6 4.0737 2.8881 -0.1588 18 6 3.5653 1.4451 -0.1257 19 1 4.0007 0.9261 0.7283 20 7 3.9542 0.7620 -1.3620 21 6 5.1918 0.1850 -1.4652 22 1 5.8813 0.2339 -0.6354 23 6 5.5606 -0.4617 -2.6368 24 7 4.7209 -0.5199 -3.6487 25 14 7.2491 -1.2482 -2.7779 26 1 7.3988 -2.2902 -1.7305 27 1 8.2954 -0.2101 -2.5966 28 1 7.3951 -1.8700 -4.1185 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.9964 1.5377 2.1549 35 1 0.5533 2.2160 1.3610 36 1 1.3611 9.9163 1.7446 37 1 2.8953 10.0294 0.8492 38 1 1.4558 9.3362 0.0645 39 1 4.1621 9.3345 3.6211 40 1 5.4638 8.4846 2.7543 41 1 4.4900 9.7144 1.9133 42 1 4.2209 3.1189 1.9812 43 1 3.9670 4.6428 1.0920 44 1 5.1578 2.8894 -0.2718 45 1 3.6197 3.4146 -0.9984 46 1 3.3351 0.7185 -2.1074 47 1 3.8442 -0.1112 -3.5755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037972798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:17 Heat of formation + Delta-G solvation = 13.121120 kcal Electronic energy + Delta-G solvation = -27519.557369 eV Core-core repulsion = 23829.114002 eV Total energy + Delta-G solvation = -3690.443367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.66797 -39.79613 -37.85244 -35.00835 -34.07392 -33.51557 -31.90164 -30.20710 -29.55543 -28.98629 -26.80022 -25.36660 -24.30065 -23.92301 -22.87516 -21.05637 -20.61111 -19.64759 -18.78448 -18.35655 -17.32292 -17.24647 -16.34045 -15.61503 -15.12487 -15.00765 -14.69073 -14.22122 -14.06615 -13.69164 -13.61825 -13.51456 -13.47046 -13.39294 -13.24077 -13.13544 -12.99126 -12.62446 -12.33065 -12.25548 -12.01511 -11.79081 -11.43238 -11.35803 -10.99429 -10.78263 -10.63938 -10.57033 -10.33470 -10.28143 -10.02622 -9.90080 -9.78708 -9.60428 -9.20006 -8.96376 -8.81380 -8.63430 -7.06865 -6.12367 -3.12975 0.05833 0.84578 1.34400 2.17112 2.53314 3.04198 3.49067 3.52098 3.69889 3.92951 4.47598 4.51044 4.63186 4.64234 4.84961 5.00158 5.08253 5.08756 5.10062 5.19944 5.30164 5.32085 5.41348 5.43378 5.44750 5.53289 5.55269 5.56572 5.61736 5.76889 5.88049 5.94321 5.99937 6.03936 6.12953 6.23272 6.24713 6.34248 6.40700 6.54162 6.69979 6.80845 6.92899 7.15457 7.40549 7.76954 7.92308 8.72779 9.18989 10.05528 10.20835 11.35630 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.003222 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.362024 B = 8687.212922 C =10097.964060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.107 4.107 4 H 0.071 0.929 5 C 0.122 3.878 6 N -0.594 5.594 7 C 0.597 3.403 8 O -0.511 6.511 9 C 0.003 3.997 10 N -0.401 5.401 11 C 0.049 3.951 12 C -0.079 4.079 13 C -0.244 4.244 14 C -0.076 4.076 15 S 0.192 5.808 16 C 0.095 3.905 17 C -0.148 4.148 18 C 0.189 3.811 19 H 0.051 0.949 20 N -0.731 5.731 21 C -0.331 4.331 22 H 0.064 0.936 23 C -0.043 4.043 24 N -0.943 5.943 25 Si 1.078 2.922 26 H -0.295 1.295 27 H -0.296 1.296 28 H -0.286 1.286 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.367 0.633 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.069 16.365 15.136 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.127 4.127 4 H 0.089 0.911 5 C 0.000 4.000 6 N -0.328 5.328 7 C 0.380 3.620 8 O -0.385 6.385 9 C -0.274 4.274 10 N -0.117 5.117 11 C -0.088 4.088 12 C -0.138 4.138 13 C -0.366 4.366 14 C -0.135 4.135 15 S 0.448 5.552 16 C -0.029 4.029 17 C -0.190 4.190 18 C 0.079 3.921 19 H 0.069 0.931 20 N -0.372 5.372 21 C -0.462 4.462 22 H 0.082 0.918 23 C -0.241 4.241 24 N -0.588 5.588 25 Si 0.909 3.091 26 H -0.223 1.223 27 H -0.223 1.223 28 H -0.211 1.211 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.201 0.799 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.332 14.749 14.588 20.787 hybrid contribution -1.260 1.841 0.464 2.279 sum -2.592 16.590 15.052 22.551 Atomic orbital electron populations 1.21854 0.96581 1.01195 1.01472 1.21431 0.94543 0.95408 1.03431 1.21823 0.97745 0.96406 0.96742 0.91071 1.21855 0.99669 0.80210 0.98218 1.47975 1.08770 1.06409 1.69619 1.16718 0.86092 0.81481 0.77710 1.90824 1.12802 1.84692 1.50230 1.27244 0.97626 0.97390 1.05122 1.66520 1.29082 0.96962 1.19107 1.20198 0.92209 0.96132 1.00251 1.20405 1.02113 0.89281 1.02025 1.25505 1.03100 1.00979 1.07004 1.20308 0.95948 0.95091 1.02171 1.83995 1.22779 0.99376 1.49010 1.22218 0.79112 1.01442 1.00137 1.22662 1.02494 0.99173 0.94648 1.20120 0.90615 0.90325 0.91056 0.93091 1.42408 1.16589 1.65546 1.12673 1.20001 0.92462 1.32123 1.01607 0.91789 1.25724 1.05781 1.00227 0.92382 1.70883 1.08382 1.47451 1.32059 0.83270 0.74204 0.75853 0.75790 1.22288 1.22334 1.21101 0.92935 0.93016 0.93052 0.90136 0.92221 0.90922 0.88667 0.90587 0.90562 0.90419 0.90190 0.90768 0.89841 0.90551 0.90601 0.90173 0.92181 0.79917 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.68 37.16 0.36 -1.73 16 2 C -0.11 -1.73 5.31 -26.73 -0.14 -1.87 16 3 C -0.11 -1.73 1.92 -90.50 -0.17 -1.90 16 4 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 5 C 0.12 1.75 5.33 -3.71 -0.02 1.73 16 6 N -0.59 -8.68 2.97 -174.10 -0.52 -9.19 16 7 C 0.60 9.68 7.66 -12.60 -0.10 9.59 16 8 O -0.51 -9.76 16.52 5.26 0.09 -9.68 16 9 C 0.00 0.05 6.44 -14.43 -0.09 -0.05 16 10 N -0.40 -6.07 10.62 -7.69 -0.08 -6.16 16 11 C 0.05 0.57 6.68 -84.49 -0.56 0.01 16 12 C -0.08 -0.66 10.02 36.00 0.36 -0.30 16 13 C -0.24 -2.39 6.36 -35.72 -0.23 -2.62 16 14 C -0.08 -0.46 10.04 36.01 0.36 -0.10 16 15 S 0.19 2.01 20.14 -107.50 -2.17 -0.16 16 16 C 0.09 1.27 5.64 -3.71 -0.02 1.25 16 17 C -0.15 -2.49 5.66 -26.62 -0.15 -2.64 16 18 C 0.19 3.51 2.19 -67.89 -0.15 3.36 16 19 H 0.05 0.97 8.08 -51.92 -0.42 0.55 16 20 N -0.73 -17.16 4.33 -53.38 -0.23 -17.39 16 21 C -0.33 -8.81 9.93 -15.06 -0.15 -8.96 16 22 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 23 C -0.04 -1.21 5.50 -17.43 -0.10 -1.31 16 24 N -0.94 -28.48 13.70 55.49 0.76 -27.72 16 25 Si 1.08 25.23 29.92 -169.99 -5.09 20.14 16 26 H -0.30 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.30 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 32 H 0.08 1.51 7.22 -51.93 -0.37 1.14 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.10 1.41 5.72 -51.93 -0.30 1.11 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.46 6.60 -51.93 -0.34 0.11 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.40 6.65 -51.93 -0.35 0.05 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.08 0.94 4.50 -37.02 -0.17 0.78 16 44 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.37 9.13 6.35 -40.82 -0.26 8.87 16 47 H 0.26 7.62 6.78 -40.82 -0.28 7.34 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -33.14 382.01 -9.39 -42.53 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.11 Total: 7.42 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.80 Total: -5.55 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.07 Total: -60.47 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.09 Total: 20.14 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.17 Total: -0.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.14 -9.39 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037972798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.649 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds