Wall clock time and date at job start Tue Mar 31 2020 19:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47188 * 2 1 4 4 H 1.08997 * 109.52361 * 305.07957 * 3 2 1 5 5 C 1.53194 * 109.49796 * 65.16153 * 3 2 1 6 6 N 1.46926 * 108.77461 * 174.58658 * 5 3 2 7 7 C 1.34779 * 120.63029 * 126.37341 * 6 5 3 8 8 O 1.21623 * 120.00023 * 354.33471 * 7 6 5 9 9 C 1.47254 * 120.00225 * 174.34713 * 7 6 5 10 10 N 1.30562 * 125.54802 * 140.13991 * 9 7 6 11 11 C 1.30694 * 115.91066 * 179.97438 * 10 9 7 12 12 C 1.50699 * 122.11030 * 180.02562 * 11 10 9 13 13 C 1.34237 * 115.78200 * 359.97438 * 11 10 9 14 14 C 1.50703 * 125.45239 * 179.97438 * 13 11 10 15 15 S 1.71067 * 109.09104 * 359.73047 * 13 11 10 16 16 C 1.46923 * 118.73890 * 306.38828 * 6 5 3 17 17 C 1.53191 * 108.77574 * 53.61248 * 16 6 5 18 18 C 1.53033 * 109.31196 * 305.36418 * 17 16 6 19 19 H 1.09010 * 109.45904 * 301.35781 * 18 17 16 20 20 N 1.46498 * 109.46220 * 181.38756 * 18 17 16 21 21 C 1.36937 * 120.00097 * 84.99881 * 20 18 17 22 22 H 1.07998 * 120.00222 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99926 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00110 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00034 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47079 * 60.00193 * 25 23 21 27 27 H 1.48495 * 109.47264 * 299.99957 * 25 23 21 28 28 H 1.48501 * 109.47231 * 179.97438 * 25 23 21 29 29 H 1.09001 * 109.46590 * 59.99978 * 1 2 3 30 30 H 1.09000 * 109.47318 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47086 * 299.99815 * 1 2 3 32 32 H 1.09003 * 109.47416 * 239.99833 * 2 1 3 33 33 H 1.09002 * 109.47285 * 120.00302 * 2 1 3 34 34 H 1.08999 * 109.58804 * 54.79896 * 5 3 2 35 35 H 1.09001 * 109.70135 * 294.44111 * 5 3 2 36 36 H 1.08999 * 109.47065 * 89.97840 * 12 11 10 37 37 H 1.09002 * 109.47056 * 209.97435 * 12 11 10 38 38 H 1.08997 * 109.47138 * 329.97813 * 12 11 10 39 39 H 1.08999 * 109.46957 * 90.00628 * 14 13 11 40 40 H 1.09002 * 109.47393 * 210.00142 * 14 13 11 41 41 H 1.09002 * 109.47504 * 329.99966 * 14 13 11 42 42 H 1.09001 * 109.58953 * 293.81829 * 16 6 5 43 43 H 1.09008 * 109.58448 * 173.39970 * 16 6 5 44 44 H 1.09000 * 109.49577 * 185.40858 * 17 16 6 45 45 H 1.09002 * 109.52476 * 65.32952 * 17 16 6 46 46 H 0.97002 * 119.99534 * 264.99884 * 20 18 17 47 47 H 0.97005 * 119.99924 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6385 2.1267 1.3105 6 7 2.2451 3.4643 1.3507 7 6 1.4857 4.5565 1.5673 8 8 0.2754 4.4532 1.6291 9 6 2.1212 5.8750 1.7289 10 7 1.6718 6.9992 1.2403 11 6 2.3876 8.0614 1.5000 12 6 1.9980 9.4306 1.0053 13 6 3.4913 7.8561 2.2360 14 6 4.4694 8.9211 2.6606 15 16 3.6060 6.1932 2.6206 16 6 3.6952 3.5887 1.1499 17 6 4.0737 2.8881 -0.1588 18 6 3.5653 1.4451 -0.1257 19 1 4.0007 0.9261 0.7283 20 7 3.9542 0.7620 -1.3620 21 6 5.1918 0.1850 -1.4652 22 1 5.8813 0.2339 -0.6354 23 6 5.5606 -0.4617 -2.6368 24 7 4.7209 -0.5199 -3.6487 25 14 7.2491 -1.2482 -2.7779 26 1 7.3988 -2.2902 -1.7305 27 1 8.2954 -0.2101 -2.5966 28 1 7.3951 -1.8700 -4.1185 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.9964 1.5377 2.1549 35 1 0.5533 2.2160 1.3610 36 1 1.3611 9.9163 1.7446 37 1 2.8953 10.0294 0.8492 38 1 1.4558 9.3362 0.0645 39 1 4.1621 9.3345 3.6211 40 1 5.4638 8.4846 2.7543 41 1 4.4900 9.7144 1.9133 42 1 4.2209 3.1189 1.9812 43 1 3.9670 4.6428 1.0920 44 1 5.1578 2.8894 -0.2718 45 1 3.6197 3.4146 -0.9984 46 1 3.3351 0.7185 -2.1074 47 1 3.8442 -0.1112 -3.5755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037972798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:16 Heat of formation + Delta-G solvation = -8.117636 kcal Electronic energy + Delta-G solvation = -27520.478351 eV Core-core repulsion = 23829.114002 eV Total energy + Delta-G solvation = -3691.364349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76943 -40.84438 -39.22417 -36.54362 -35.57284 -34.31041 -33.58055 -31.05381 -30.93303 -30.29717 -27.92111 -26.34895 -25.70773 -25.15653 -24.49010 -22.44472 -21.72686 -20.94773 -19.71049 -19.42333 -19.25801 -18.32318 -17.53621 -16.76687 -16.61555 -16.27307 -15.82915 -15.69145 -15.40522 -15.12003 -14.92512 -14.72618 -14.57593 -14.23823 -14.09508 -14.03891 -13.83108 -13.66145 -13.56452 -13.27581 -13.10965 -12.87385 -12.74427 -12.59418 -12.53815 -12.21838 -12.12760 -11.89915 -11.80691 -11.66326 -11.60714 -11.47126 -11.07317 -10.89866 -10.78657 -10.42295 -9.95198 -9.62566 -9.06469 -8.32611 -5.26831 -0.85289 -0.04952 0.49968 1.13848 1.46318 1.60717 1.70404 1.85924 1.95454 2.74706 2.93820 3.44359 3.55479 3.62536 3.66195 3.82253 3.86242 3.88603 3.97189 4.06978 4.18092 4.28998 4.34728 4.51251 4.53282 4.57319 4.63613 4.65550 4.67726 4.72447 4.74467 4.76866 4.88856 4.90889 4.92762 5.02134 5.04970 5.17370 5.23036 5.31625 5.33535 5.42057 5.52129 5.65857 5.98494 6.50646 6.53746 6.74141 7.13231 8.03233 8.17396 9.18866 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.003222 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.362024 B = 8687.212922 C =10097.964060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.096 4.096 4 H 0.047 0.953 5 C 0.127 3.873 6 N -0.592 5.592 7 C 0.596 3.404 8 O -0.552 6.552 9 C -0.050 4.050 10 N -0.436 5.436 11 C 0.020 3.980 12 C -0.077 4.077 13 C -0.226 4.226 14 C -0.080 4.080 15 S 0.251 5.749 16 C 0.103 3.897 17 C -0.139 4.139 18 C 0.185 3.815 19 H 0.057 0.943 20 N -0.742 5.742 21 C -0.319 4.319 22 H 0.072 0.928 23 C -0.107 4.107 24 N -0.980 5.980 25 Si 1.125 2.875 26 H -0.277 1.277 27 H -0.277 1.277 28 H -0.300 1.300 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.356 0.644 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 17.997 18.029 25.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C -0.116 4.116 4 H 0.066 0.934 5 C 0.005 3.995 6 N -0.325 5.325 7 C 0.381 3.619 8 O -0.431 6.431 9 C -0.324 4.324 10 N -0.153 5.153 11 C -0.116 4.116 12 C -0.136 4.136 13 C -0.349 4.349 14 C -0.139 4.139 15 S 0.507 5.493 16 C -0.020 4.020 17 C -0.180 4.180 18 C 0.077 3.923 19 H 0.075 0.925 20 N -0.383 5.383 21 C -0.451 4.451 22 H 0.090 0.910 23 C -0.298 4.298 24 N -0.629 5.629 25 Si 0.950 3.050 26 H -0.203 1.203 27 H -0.203 1.203 28 H -0.226 1.226 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.056 0.944 46 H 0.187 0.813 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.752 16.398 17.539 24.022 hybrid contribution -1.868 1.465 -0.348 2.400 sum -1.116 17.863 17.191 24.817 Atomic orbital electron populations 1.21796 0.94794 1.02093 1.01777 1.21335 0.96098 0.94667 1.02134 1.21671 0.95918 0.96778 0.97238 0.93396 1.21829 0.99709 0.80339 0.97622 1.48007 1.09134 1.06241 1.69081 1.17031 0.85722 0.82401 0.76793 1.90780 1.14543 1.85533 1.52197 1.26888 1.00569 0.96518 1.08398 1.66499 1.30749 0.98011 1.20046 1.20680 0.92970 0.96514 1.01466 1.20509 1.03477 0.88114 1.01526 1.26123 1.02564 1.01636 1.04584 1.20569 0.95413 0.94389 1.03526 1.83631 1.19347 0.99591 1.46733 1.22238 0.78606 1.02155 0.98995 1.22452 1.01683 0.97895 0.96003 1.20352 0.92195 0.90780 0.89008 0.92539 1.42607 1.15645 1.66091 1.13956 1.20356 0.93257 1.30210 1.01250 0.90972 1.27074 1.08544 1.01613 0.92552 1.70994 1.08548 1.49813 1.33536 0.82660 0.71060 0.75870 0.75397 1.20316 1.20319 1.22646 0.93880 0.91828 0.91482 0.93749 0.91022 0.88256 0.88995 0.89587 0.87776 0.91750 0.88249 0.89344 0.88079 0.87513 0.89327 0.90810 0.94443 0.81253 0.94774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.68 71.98 0.70 -3.28 16 2 C -0.10 -3.31 5.31 30.59 0.16 -3.15 16 3 C -0.10 -3.14 1.92 -10.72 -0.02 -3.16 16 4 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 5 C 0.13 3.51 5.33 86.36 0.46 3.97 16 6 N -0.59 -16.83 2.97 -822.96 -2.45 -19.28 16 7 C 0.60 19.42 7.66 86.61 0.66 20.08 16 8 O -0.55 -21.75 16.52 -4.11 -0.07 -21.81 16 9 C -0.05 -1.42 6.44 87.25 0.56 -0.86 16 10 N -0.44 -13.20 10.62 -178.25 -1.89 -15.10 16 11 C 0.02 0.44 6.68 41.81 0.28 0.72 16 12 C -0.08 -1.16 10.02 71.24 0.71 -0.45 16 13 C -0.23 -3.75 6.36 24.77 0.16 -3.60 16 14 C -0.08 -0.60 10.04 71.24 0.71 0.11 16 15 S 0.25 4.59 20.14 -56.49 -1.14 3.45 16 16 C 0.10 2.58 5.64 86.36 0.49 3.07 16 17 C -0.14 -4.62 5.66 30.67 0.17 -4.45 16 18 C 0.19 6.84 2.19 45.02 0.10 6.94 16 19 H 0.06 2.05 8.08 -2.38 -0.02 2.03 16 20 N -0.74 -35.73 4.33 -322.81 -1.40 -37.13 16 21 C -0.32 -17.04 9.93 84.03 0.83 -16.21 16 22 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 23 C -0.11 -6.06 5.50 84.86 0.47 -5.60 16 24 N -0.98 -61.13 13.70 21.65 0.30 -60.84 16 25 Si 1.12 50.81 29.92 68.60 2.05 52.87 16 26 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 27 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 28 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.60 6.70 -2.39 -0.02 1.59 16 32 H 0.04 1.74 7.22 -2.39 -0.02 1.72 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.09 2.68 5.72 -2.39 -0.01 2.67 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 0.91 6.60 -2.39 -0.02 0.90 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.10 0.48 6.65 -2.39 -0.02 0.46 16 42 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.09 2.03 4.50 -11.86 -0.05 1.97 16 44 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.36 18.63 6.35 -92.71 -0.59 18.04 16 47 H 0.24 15.16 6.78 -92.70 -0.63 14.53 16 Total: -1.00 -75.74 382.01 2.36 -73.38 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.50 Total: 30.30 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 6.45 Total: -5.85 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -5.44 Total: -132.33 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.07 Total: -21.81 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.05 Total: 52.87 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.14 Total: 3.45 kcal Total: -75.74 2.36 -73.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037972798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.263 kcal (2) G-P(sol) polarization free energy of solvation -75.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds