Wall clock time and date at job start Tue Mar 31 2020 19:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09004 * 109.49591 * 304.99515 * 3 2 1 5 5 C 1.53188 * 109.49955 * 65.06231 * 3 2 1 6 6 N 1.46924 * 108.77781 * 174.58669 * 5 3 2 7 7 C 1.34779 * 120.63100 * 126.36968 * 6 5 3 8 8 O 1.21281 * 120.00000 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99991 * 180.02562 * 7 6 5 10 10 C 1.50694 * 109.47055 * 179.97438 * 9 7 6 11 11 C 1.33637 * 122.75152 * 124.99856 * 10 9 7 12 12 S 1.76201 * 107.92834 * 179.97438 * 11 10 9 13 13 C 1.70979 * 90.28097 * 0.02562 * 12 11 10 14 14 C 1.50696 * 124.91449 * 179.97438 * 13 12 11 15 15 N 1.29029 * 110.16692 * 359.73081 * 13 12 11 16 16 C 1.46925 * 118.73719 * 306.39300 * 6 5 3 17 17 C 1.53192 * 108.77825 * 53.60831 * 16 6 5 18 18 C 1.53038 * 109.49791 * 184.93493 * 3 2 1 19 19 H 1.09003 * 109.46327 * 58.66019 * 18 3 2 20 20 N 1.46508 * 109.46081 * 298.70310 * 18 3 2 21 21 C 1.36935 * 119.99831 * 155.00257 * 20 18 3 22 22 H 1.07995 * 120.00202 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99513 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00043 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47173 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47403 * 119.99673 * 25 23 21 28 28 H 1.48505 * 109.47260 * 240.00043 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 1.09001 * 109.58810 * 294.37827 * 5 3 2 35 35 H 1.08998 * 109.58605 * 54.80070 * 5 3 2 36 36 H 1.08994 * 109.47058 * 300.00384 * 9 7 6 37 37 H 1.09004 * 109.46832 * 60.00145 * 9 7 6 38 38 H 1.08004 * 126.03513 * 0.02562 * 11 10 9 39 39 H 1.08992 * 109.47559 * 359.97438 * 14 13 12 40 40 H 1.09002 * 109.47025 * 119.98120 * 14 13 12 41 41 H 1.08997 * 109.46942 * 239.97166 * 14 13 12 42 42 H 1.09000 * 109.58470 * 173.39508 * 16 6 5 43 43 H 1.09001 * 109.59040 * 293.81681 * 16 6 5 44 44 H 1.09004 * 109.49845 * 65.30771 * 17 16 6 45 45 H 1.08999 * 109.50299 * 185.37849 * 17 16 6 46 46 H 0.96996 * 119.99319 * 335.00192 * 20 18 3 47 47 H 0.97000 * 120.00086 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6057 1.9820 -0.8418 5 6 1.6364 2.1276 1.3094 6 7 2.2429 3.4652 1.3498 7 6 1.4831 4.5575 1.5645 8 8 0.2868 4.4417 1.7271 9 6 2.1200 5.9228 1.6026 10 6 1.0606 6.9644 1.8553 11 6 1.1329 7.8394 2.8627 12 16 -0.2970 8.8667 2.7924 13 6 -0.8502 8.0169 1.4158 14 6 -2.1303 8.3112 0.6772 15 7 -0.0104 7.0903 1.0978 16 6 3.6934 3.5895 1.1512 17 6 4.0739 2.8881 -0.1564 18 6 3.5653 1.4451 -0.1241 19 1 3.8558 0.9365 -1.0434 20 7 4.1496 0.7479 1.0244 21 6 5.3876 0.1723 0.9185 22 1 5.9330 0.2317 -0.0116 23 6 5.9409 -0.4887 2.0066 24 7 5.2760 -0.5616 3.1401 25 14 7.6293 -1.2746 1.8622 26 1 8.1627 -1.0538 0.4939 27 1 8.5470 -0.6626 2.8564 28 1 7.5203 -2.7329 2.1210 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 0.5511 2.2169 1.3557 35 1 1.9930 1.5391 2.1547 36 1 2.8606 5.9560 2.4015 37 1 2.6061 6.1237 0.6479 38 1 1.9278 7.9058 3.5909 39 1 -2.6431 9.1449 1.1568 40 1 -1.9019 8.5713 -0.3564 41 1 -2.7719 7.4303 0.6968 42 1 3.9652 4.6434 1.0931 43 1 4.2177 3.1202 1.9836 44 1 3.6208 3.4142 -0.9967 45 1 5.1582 2.8898 -0.2681 46 1 3.6595 0.6943 1.8597 47 1 5.6628 -1.0231 3.9005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037975326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:19 Heat of formation + Delta-G solvation = -6.257127 kcal Electronic energy + Delta-G solvation = -27617.558248 eV Core-core repulsion = 23926.274577 eV Total energy + Delta-G solvation = -3691.283671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.58262 -40.59592 -39.00316 -35.84341 -35.37544 -34.01872 -33.37435 -31.11864 -30.93807 -29.68494 -28.72737 -26.34577 -25.39025 -25.02242 -23.80979 -22.14513 -21.14230 -20.53166 -19.68940 -19.23263 -18.49967 -18.10146 -16.96709 -16.72385 -16.29065 -16.07193 -15.93438 -15.62042 -15.55018 -15.01473 -14.78466 -14.73819 -14.44438 -14.33452 -14.13651 -14.00248 -13.63491 -13.43815 -13.14052 -13.05077 -12.92180 -12.88239 -12.86027 -12.62743 -12.37189 -12.33640 -12.07705 -12.02196 -11.82629 -11.57455 -11.44624 -11.11010 -10.90438 -10.72859 -10.50274 -10.27693 -9.62260 -9.52598 -8.89929 -7.86927 -5.12889 -0.20593 0.48513 0.77386 1.49505 1.51312 1.59561 1.68251 1.73682 2.20242 2.61058 3.14634 3.47032 3.60028 3.81769 3.87661 3.94414 4.05374 4.11194 4.17441 4.28999 4.37177 4.39538 4.44471 4.47082 4.47872 4.52837 4.61500 4.67194 4.71908 4.78417 4.86959 4.90039 5.00048 5.03154 5.06410 5.17082 5.23009 5.23341 5.29320 5.34509 5.40746 5.52380 5.62820 5.70040 6.34887 6.51588 6.89527 7.23288 7.42452 8.18725 8.42632 9.36573 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.002782 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.896762 B =10061.682511 C =11054.754824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.091 4.091 4 H 0.080 0.920 5 C 0.128 3.872 6 N -0.604 5.604 7 C 0.515 3.485 8 O -0.574 6.574 9 C -0.062 4.062 10 C 0.065 3.935 11 C -0.263 4.263 12 S 0.149 5.851 13 C 0.031 3.969 14 C -0.075 4.075 15 N -0.489 5.489 16 C 0.118 3.882 17 C -0.143 4.143 18 C 0.172 3.828 19 H 0.046 0.954 20 N -0.724 5.724 21 C -0.222 4.222 22 H 0.076 0.924 23 C -0.074 4.074 24 N -0.969 5.969 25 Si 0.962 3.038 26 H -0.267 1.267 27 H -0.298 1.298 28 H -0.302 1.302 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.201 0.799 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.373 0.627 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.549 20.170 -4.925 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.099 0.901 5 C 0.005 3.995 6 N -0.336 5.336 7 C 0.303 3.697 8 O -0.454 6.454 9 C -0.104 4.104 10 C -0.067 4.067 11 C -0.402 4.402 12 S 0.403 5.597 13 C -0.247 4.247 14 C -0.135 4.135 15 N -0.205 5.205 16 C -0.004 4.004 17 C -0.183 4.183 18 C 0.064 3.936 19 H 0.064 0.936 20 N -0.365 5.365 21 C -0.354 4.354 22 H 0.093 0.907 23 C -0.266 4.266 24 N -0.621 5.621 25 Si 0.793 3.207 26 H -0.191 1.191 27 H -0.226 1.226 28 H -0.230 1.230 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.218 0.782 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.127 0.873 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.206 0.794 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.522 20.585 -4.805 24.074 hybrid contribution 1.639 -1.799 0.528 2.490 sum -9.883 18.786 -4.277 21.653 Atomic orbital electron populations 1.21777 0.94942 1.01864 1.01685 1.21340 0.95918 0.95343 1.01738 1.21639 0.96015 0.96284 0.97153 0.90141 1.21415 0.98256 0.82340 0.97459 1.48161 1.08941 1.06078 1.70419 1.20859 0.86555 0.86623 0.75617 1.90659 1.16496 1.86971 1.51252 1.20344 0.95800 0.87199 1.07011 1.19799 0.94869 0.98358 0.93685 1.27119 1.05245 1.02296 1.05519 1.83602 1.14450 1.34095 1.27528 1.27602 1.02010 0.95739 0.99367 1.20543 0.89079 1.03565 1.00291 1.65978 1.03570 1.19211 1.31715 1.21726 0.78329 1.01989 0.98368 1.22394 1.01514 0.97543 0.96889 1.20439 0.90825 0.91721 0.90634 0.93626 1.42599 1.18234 1.64307 1.11389 1.19594 0.94176 1.24930 0.96696 0.90656 1.25373 1.01775 1.03319 0.96155 1.69812 1.39487 1.49907 1.02880 0.85222 0.80766 0.77275 0.77394 1.19112 1.22567 1.23000 0.92080 0.91982 0.93486 0.93706 0.91893 0.90383 0.93612 0.84731 0.85487 0.78174 0.87801 0.88764 0.89993 0.87260 0.92734 0.90779 0.91173 0.79354 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.67 71.98 0.70 -3.34 16 2 C -0.11 -3.46 5.19 30.60 0.16 -3.30 16 3 C -0.09 -2.99 2.14 -10.72 -0.02 -3.02 16 4 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 5 C 0.13 4.52 5.03 86.36 0.43 4.96 16 6 N -0.60 -19.28 2.97 -818.92 -2.43 -21.72 16 7 C 0.51 16.51 7.67 87.66 0.67 17.18 16 8 O -0.57 -22.94 14.87 -3.03 -0.05 -22.99 16 9 C -0.06 -1.43 4.54 29.10 0.13 -1.29 16 10 C 0.07 1.66 5.63 41.52 0.23 1.89 16 11 C -0.26 -5.24 11.07 66.78 0.74 -4.50 16 12 S 0.15 2.58 23.17 -56.49 -1.31 1.27 16 13 C 0.03 0.68 7.39 88.52 0.65 1.34 16 14 C -0.07 -1.10 10.47 71.23 0.75 -0.35 16 15 N -0.49 -13.98 9.70 -179.41 -1.74 -15.72 16 16 C 0.12 3.45 6.08 86.36 0.53 3.98 16 17 C -0.14 -4.35 5.78 30.67 0.18 -4.17 16 18 C 0.17 6.27 2.53 45.02 0.11 6.38 16 19 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 20 N -0.72 -33.36 3.72 -322.80 -1.20 -34.56 16 21 C -0.22 -11.46 9.93 84.03 0.83 -10.62 16 22 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 23 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 24 N -0.97 -57.56 13.06 21.65 0.28 -57.28 16 25 Si 0.96 44.98 29.55 68.60 2.03 47.00 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.36 6.70 -2.38 -0.02 1.34 16 32 H 0.04 1.76 7.70 -2.39 -0.02 1.74 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 2.86 5.72 -2.39 -0.01 2.84 16 35 H 0.05 1.86 6.64 -2.39 -0.02 1.84 16 36 H 0.13 2.33 7.83 -2.39 -0.02 2.32 16 37 H 0.13 2.43 7.69 -2.38 -0.02 2.41 16 38 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.10 0.90 8.12 -2.39 -0.02 0.88 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.11 2.31 5.93 -2.39 -0.01 2.29 16 43 H 0.05 1.97 7.74 -2.39 -0.02 1.95 16 44 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.37 18.96 5.94 -92.71 -0.55 18.40 16 47 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -71.16 384.41 2.57 -68.59 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.43 Total: 33.89 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.56 Total: 1.51 kcal Atomic # 7 Polarization: -124.19 SS G_CDS: -5.09 Total: -129.28 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.05 Total: -22.99 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.31 Total: 1.27 kcal Total: -71.16 2.57 -68.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037975326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.338 kcal (2) G-P(sol) polarization free energy of solvation -71.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds