Wall clock time and date at job start Tue Mar 31 2020 19:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46919 * 2 1 4 4 H 1.08997 * 109.49829 * 305.06621 * 3 2 1 5 5 C 1.53625 * 109.43192 * 65.29169 * 3 2 1 6 6 N 1.46924 * 108.54106 * 174.72287 * 5 3 2 7 7 C 1.34775 * 120.63116 * 126.36987 * 6 5 3 8 8 O 1.21280 * 119.99969 * 359.71656 * 7 6 5 9 9 C 1.50695 * 120.00067 * 179.71903 * 7 6 5 10 10 C 1.50706 * 109.47238 * 180.02562 * 9 7 6 11 11 C 1.33635 * 122.75319 * 124.73143 * 10 9 7 12 12 S 1.76192 * 107.92524 * 179.97438 * 11 10 9 13 13 C 1.70976 * 90.28427 * 0.27803 * 12 11 10 14 14 C 1.50699 * 124.91910 * 179.83974 * 13 12 11 15 15 N 1.29027 * 110.16712 * 359.83656 * 13 12 11 16 16 C 1.46925 * 118.73881 * 306.09329 * 6 5 3 17 17 C 1.53194 * 108.77677 * 53.85843 * 16 6 5 18 18 C 1.53029 * 109.31253 * 305.36773 * 17 16 6 19 19 H 1.09002 * 109.46165 * 301.35436 * 18 17 16 20 20 N 1.46501 * 109.45771 * 181.38308 * 18 17 16 21 21 C 1.36939 * 120.00156 * 85.00192 * 20 18 17 22 22 H 1.08003 * 119.99767 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00124 * 180.02562 * 21 20 18 24 24 N 1.31617 * 120.00028 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00138 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47449 * 89.99481 * 25 23 21 27 27 H 1.48500 * 109.47257 * 210.00130 * 25 23 21 28 28 H 1.48508 * 109.47052 * 329.99836 * 25 23 21 29 29 H 1.09000 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46694 * 299.99581 * 1 2 3 31 31 H 1.08995 * 109.47346 * 59.99879 * 1 2 3 32 32 H 1.08997 * 109.46883 * 239.99884 * 2 1 3 33 33 H 1.09001 * 109.46958 * 120.00271 * 2 1 3 34 34 H 1.08997 * 109.73885 * 54.98321 * 5 3 2 35 35 H 1.08993 * 109.66397 * 294.41527 * 5 3 2 36 36 H 1.08997 * 109.47434 * 59.99616 * 9 7 6 37 37 H 1.08998 * 109.47220 * 299.99642 * 9 7 6 38 38 H 1.08001 * 126.03202 * 0.03585 * 11 10 9 39 39 H 1.08995 * 109.47262 * 270.00009 * 14 13 12 40 40 H 1.09001 * 109.46936 * 29.99762 * 14 13 12 41 41 H 1.08999 * 109.46821 * 149.99253 * 14 13 12 42 42 H 1.09001 * 109.58928 * 173.64810 * 16 6 5 43 43 H 1.09000 * 109.58784 * 293.93115 * 16 6 5 44 44 H 1.09004 * 109.49290 * 65.32210 * 17 16 6 45 45 H 1.09001 * 109.49782 * 185.37653 * 17 16 6 46 46 H 0.97003 * 120.00252 * 264.99699 * 20 18 17 47 47 H 0.97009 * 120.00092 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 -0.8410 5 6 1.6394 2.1262 1.3161 6 7 2.2451 3.4644 1.3507 7 6 1.4859 4.5564 1.5682 8 8 0.2899 4.4405 1.7326 9 6 2.1230 5.9215 1.6071 10 6 1.0643 6.9629 1.8643 11 6 1.1366 7.8328 2.8762 12 16 -0.2922 8.8615 2.8099 13 6 -0.8489 8.0144 1.4331 14 6 -2.1315 8.3093 0.6990 15 7 -0.0118 7.0860 1.1135 16 6 3.6953 3.5888 1.1498 17 6 4.0737 2.8881 -0.1589 18 6 3.5652 1.4451 -0.1257 19 1 4.0007 0.9261 0.7282 20 7 3.9541 0.7621 -1.3621 21 6 5.1917 0.1851 -1.4654 22 1 5.8813 0.2339 -0.6356 23 6 5.5604 -0.4616 -2.6370 24 7 4.7203 -0.5206 -3.6485 25 14 7.2489 -1.2481 -2.7783 26 1 7.1788 -2.6574 -2.3156 27 1 7.6942 -1.2135 -4.1945 28 1 8.2161 -0.4984 -1.9368 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.0008 1.5395 2.1606 35 1 0.5543 2.2149 1.3679 36 1 2.6076 6.1237 0.6519 37 1 2.8650 5.9536 2.4049 38 1 1.9311 7.8948 3.6051 39 1 -2.9407 7.7202 1.1304 40 1 -2.3662 9.3699 0.7892 41 1 -2.0152 8.0512 -0.3536 42 1 3.9671 4.6428 1.0918 43 1 4.2210 3.1212 1.9823 44 1 3.6193 3.4148 -0.9981 45 1 5.1578 2.8899 -0.2723 46 1 3.3350 0.7185 -2.1075 47 1 4.9781 -0.9722 -4.4674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037975327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:22 Heat of formation + Delta-G solvation = 11.367292 kcal Electronic energy + Delta-G solvation = -27232.264742 eV Core-core repulsion = 23541.745323 eV Total energy + Delta-G solvation = -3690.519419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.53878 -39.53094 -37.61663 -34.68339 -33.81370 -33.21736 -31.69937 -30.22131 -29.47081 -28.59136 -27.77647 -24.99498 -23.87183 -23.16880 -22.59645 -20.80162 -20.12468 -19.71776 -19.02047 -17.66076 -17.16400 -16.96832 -15.91217 -15.42756 -15.24505 -14.91612 -14.81358 -14.08300 -14.02550 -13.81841 -13.63766 -13.45146 -13.31015 -13.22416 -13.07020 -12.76126 -12.56509 -12.38725 -12.26446 -11.96499 -11.80979 -11.57781 -11.53287 -11.25748 -10.93152 -10.84654 -10.67996 -10.31637 -10.19871 -10.13133 -9.77517 -9.71159 -9.63026 -9.57692 -9.50914 -8.90871 -8.85120 -8.39496 -6.96387 -5.77800 -3.06440 0.54506 1.18848 1.53444 2.60526 2.77739 3.23608 3.41676 3.46873 3.48676 3.86506 4.56322 4.57614 4.67414 4.88062 5.01580 5.05304 5.09332 5.21860 5.23625 5.26621 5.30806 5.38367 5.46789 5.54259 5.58601 5.61815 5.63446 5.70965 5.72771 5.92476 5.97996 6.05097 6.15904 6.18666 6.34305 6.39222 6.42883 6.48548 6.60987 6.71641 6.85110 6.98558 7.08149 7.57161 7.67269 7.68056 8.34212 8.40402 9.51806 10.09713 10.44547 11.44630 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.002460 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.299457 B =11377.727358 C =11979.376008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.121 3.879 6 N -0.609 5.609 7 C 0.519 3.481 8 O -0.531 6.531 9 C -0.068 4.068 10 C 0.094 3.906 11 C -0.260 4.260 12 S 0.100 5.900 13 C 0.054 3.946 14 C -0.077 4.077 15 N -0.445 5.445 16 C 0.106 3.894 17 C -0.152 4.152 18 C 0.184 3.816 19 H 0.047 0.953 20 N -0.720 5.720 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.177 0.823 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.304 17.921 14.029 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.001 4.001 6 N -0.342 5.342 7 C 0.306 3.694 8 O -0.407 6.407 9 C -0.110 4.110 10 C -0.038 4.038 11 C -0.399 4.399 12 S 0.355 5.645 13 C -0.225 4.225 14 C -0.137 4.137 15 N -0.159 5.159 16 C -0.017 4.017 17 C -0.193 4.193 18 C 0.074 3.926 19 H 0.065 0.935 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.194 0.806 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.279 18.295 14.258 25.371 hybrid contribution 1.685 -1.115 -0.561 2.097 sum -8.594 17.180 13.698 23.593 Atomic orbital electron populations 1.21840 0.96840 1.00956 1.01319 1.21450 0.94362 0.95783 1.03383 1.21856 0.97565 0.96195 0.96754 0.91197 1.21798 0.99400 0.81373 0.97568 1.48148 1.08475 1.06678 1.70941 1.20177 0.86990 0.85456 0.76759 1.90697 1.14586 1.86204 1.49206 1.20293 0.95599 0.89987 1.05164 1.19614 0.94356 0.97320 0.92553 1.26712 1.04213 1.03095 1.05876 1.83836 1.15798 1.35634 1.29255 1.27049 1.01432 0.95702 0.98358 1.20441 0.90335 1.02197 1.00756 1.66013 1.02338 1.17499 1.30028 1.21875 0.79551 1.01033 0.99252 1.22682 1.02151 0.99346 0.95147 1.20174 0.90834 0.90500 0.91129 0.93487 1.42419 1.16500 1.64423 1.12722 1.19206 0.91819 1.27294 0.98533 0.91265 1.24726 0.98120 1.01590 0.96451 1.69661 1.35241 1.48376 1.04709 0.86233 0.84066 0.79338 0.76786 1.21791 1.21866 1.20836 0.93222 0.93263 0.92991 0.89832 0.92526 0.91851 0.89257 0.87030 0.87390 0.80608 0.89526 0.90243 0.89170 0.90621 0.91464 0.92143 0.90592 0.78198 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.68 37.16 0.36 -1.84 16 2 C -0.11 -1.85 5.31 -26.73 -0.14 -1.99 16 3 C -0.10 -1.73 1.94 -90.27 -0.17 -1.90 16 4 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 5 C 0.12 1.81 5.35 -3.49 -0.02 1.79 16 6 N -0.61 -8.61 2.97 -172.51 -0.51 -9.12 16 7 C 0.52 7.73 7.66 -10.99 -0.08 7.64 16 8 O -0.53 -9.84 14.85 5.56 0.08 -9.76 16 9 C -0.07 -0.76 4.54 -29.03 -0.13 -0.90 16 10 C 0.09 1.18 5.64 -84.22 -0.47 0.71 16 11 C -0.26 -2.59 11.07 29.12 0.32 -2.27 16 12 S 0.10 0.91 23.18 -107.50 -2.49 -1.59 16 13 C 0.05 0.60 7.39 -13.46 -0.10 0.50 16 14 C -0.08 -0.60 10.46 36.01 0.38 -0.23 16 15 N -0.44 -6.34 9.68 -8.05 -0.08 -6.41 16 16 C 0.11 1.32 6.34 -3.71 -0.02 1.30 16 17 C -0.15 -2.48 5.66 -26.62 -0.15 -2.63 16 18 C 0.18 3.44 2.19 -67.89 -0.15 3.29 16 19 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 20 N -0.72 -17.13 4.33 -53.39 -0.23 -17.36 16 21 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 22 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 25 Si 0.90 21.94 29.55 -169.99 -5.02 16.92 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.67 6.70 -51.92 -0.35 0.32 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.64 7.22 -51.93 -0.37 1.27 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.43 5.73 -51.93 -0.30 1.13 16 36 H 0.11 1.15 7.69 -51.93 -0.40 0.76 16 37 H 0.11 0.86 7.83 -51.93 -0.41 0.45 16 38 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.74 5.93 -51.93 -0.31 0.43 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.38 9.94 7.51 -40.82 -0.31 9.63 16 47 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 388.06 15.07 5.85 5.85 Total: -1.00 -33.27 388.06 -9.80 -43.06 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.48 Total: 8.70 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.64 Total: -3.42 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.10 Total: -59.77 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.49 Total: -1.59 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.27 -9.80 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037975327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.429 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds