Wall clock time and date at job start Tue Mar 31 2020 19:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47252 * 2 1 4 4 H 1.08993 * 109.52781 * 54.91620 * 3 2 1 5 5 C 1.52766 * 109.55910 * 294.96136 * 3 2 1 6 6 N 1.46922 * 109.00423 * 185.55293 * 5 3 2 7 7 C 1.34777 * 120.63244 * 233.58279 * 6 5 3 8 8 O 1.21278 * 119.99854 * 359.72887 * 7 6 5 9 9 C 1.50703 * 120.00161 * 179.72194 * 7 6 5 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.33640 * 122.74685 * 124.73444 * 10 9 7 12 12 S 1.76198 * 107.92471 * 179.97438 * 11 10 9 13 13 C 1.70985 * 90.28153 * 0.27416 * 12 11 10 14 14 C 1.50701 * 124.91648 * 179.84156 * 13 12 11 15 15 N 1.29031 * 110.16304 * 359.84254 * 13 12 11 16 16 C 1.46926 * 118.74006 * 53.31495 * 6 5 3 17 17 C 1.53197 * 108.77484 * 306.64082 * 16 6 5 18 18 C 1.53037 * 109.49688 * 175.00301 * 3 2 1 19 19 H 1.09007 * 109.45956 * 301.33304 * 18 3 2 20 20 N 1.46500 * 109.46359 * 61.28827 * 18 3 2 21 21 C 1.36941 * 119.99941 * 205.06683 * 20 18 3 22 22 H 1.07998 * 120.00247 * 0.02562 * 21 20 18 23 23 C 1.38815 * 119.99603 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00024 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99832 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47001 * 90.00309 * 25 23 21 27 27 H 1.48497 * 109.47422 * 210.00206 * 25 23 21 28 28 H 1.48498 * 109.47251 * 330.00660 * 25 23 21 29 29 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47097 * 300.00591 * 1 2 3 31 31 H 1.08998 * 109.47092 * 60.00207 * 1 2 3 32 32 H 1.08999 * 109.47097 * 239.99409 * 2 1 3 33 33 H 1.09002 * 109.46645 * 119.99597 * 2 1 3 34 34 H 1.09003 * 109.51011 * 65.67521 * 5 3 2 35 35 H 1.08996 * 109.43207 * 305.38992 * 5 3 2 36 36 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 37 37 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 38 38 H 1.08001 * 126.04068 * 0.03688 * 11 10 9 39 39 H 1.09001 * 109.46971 * 269.99692 * 14 13 12 40 40 H 1.08998 * 109.46958 * 29.99910 * 14 13 12 41 41 H 1.09006 * 109.46872 * 149.99831 * 14 13 12 42 42 H 1.09001 * 109.59151 * 66.42410 * 16 6 5 43 43 H 1.09003 * 109.59195 * 186.85244 * 16 6 5 44 44 H 1.09000 * 109.49544 * 174.58699 * 17 16 6 45 45 H 1.09001 * 109.49335 * 294.68070 * 17 16 6 46 46 H 0.97002 * 119.99966 * 25.07126 * 20 18 3 47 47 H 0.97003 * 119.99993 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 0.8406 5 6 1.6378 2.1272 -1.3050 6 7 2.2452 3.4642 -1.3509 7 6 1.4858 4.5564 -1.5675 8 8 0.2898 4.4405 -1.7318 9 6 2.1228 5.9216 -1.6055 10 6 1.0639 6.9631 -1.8606 11 6 0.8689 8.0090 -1.0519 12 16 -0.4530 8.9675 -1.7141 13 6 -0.6175 7.8621 -3.0081 14 6 -1.6292 7.9788 -4.1189 15 7 0.2501 6.9136 -2.8959 16 6 3.6953 3.5886 -1.1500 17 6 4.0737 2.8880 0.1587 18 6 3.5652 1.4450 0.1257 19 1 3.8546 0.9368 1.0456 20 7 4.1507 0.7473 -1.0218 21 6 5.3880 0.1704 -0.9139 22 1 5.9320 0.2294 0.0172 23 6 5.9429 -0.4902 -2.0014 24 7 5.2801 -0.5616 -3.1363 25 14 7.6309 -1.2766 -1.8545 26 1 7.4845 -2.6803 -1.3925 27 1 8.3022 -1.2589 -3.1790 28 1 8.4479 -0.5158 -0.8752 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 0.5524 2.2172 -1.3494 35 1 1.9923 1.5357 -2.1491 36 1 2.8648 5.9544 -2.4033 37 1 2.6074 6.1231 -0.6501 38 1 1.4242 8.2287 -0.1520 39 1 -2.5437 7.4589 -3.8335 40 1 -1.8505 9.0306 -4.2998 41 1 -1.2250 7.5311 -5.0270 42 1 4.2211 3.1187 -1.9812 43 1 3.9672 4.6426 -1.0921 44 1 5.1579 2.8893 0.2718 45 1 3.6194 3.4148 0.9979 46 1 3.6620 0.6941 -1.8580 47 1 5.6680 -1.0229 -3.8963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037975328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:25 Heat of formation + Delta-G solvation = 13.378563 kcal Electronic energy + Delta-G solvation = -27606.610146 eV Core-core repulsion = 23916.177943 eV Total energy + Delta-G solvation = -3690.432204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.44737 -39.50027 -37.62872 -34.38447 -33.76172 -33.15698 -31.66856 -30.11599 -29.35652 -28.48031 -27.73722 -24.90510 -23.81455 -23.47080 -22.90251 -20.77610 -20.04460 -19.50810 -18.33037 -17.45710 -17.38172 -16.81610 -15.83845 -15.27340 -15.10104 -14.94419 -14.58732 -14.24806 -14.01175 -13.86571 -13.57765 -13.54153 -13.24472 -13.06146 -12.97688 -12.63500 -12.53578 -12.32466 -12.23748 -12.04817 -11.71926 -11.48581 -11.32515 -11.07015 -10.96049 -10.79936 -10.69402 -10.27806 -10.24267 -10.16063 -9.76350 -9.66247 -9.54277 -9.52145 -9.41634 -8.92714 -8.77731 -8.14352 -6.97406 -5.78950 -3.07428 0.61174 1.25254 1.59771 2.68823 2.94675 3.40888 3.41496 3.46777 3.48362 3.93461 4.57152 4.67637 4.80420 4.96945 5.09547 5.12719 5.19438 5.26636 5.30476 5.33816 5.37544 5.51372 5.56941 5.59640 5.62732 5.67620 5.72836 5.82442 5.86670 5.94370 6.04562 6.13078 6.18035 6.23014 6.38655 6.41441 6.43235 6.59077 6.66884 6.72965 6.80055 6.96556 7.05207 7.68238 7.73060 7.80095 8.39469 8.51018 9.51094 10.08202 10.43262 11.43366 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016478 B = 0.002747 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.867113 B =10190.225952 C =10838.229752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.064 0.936 5 C 0.121 3.879 6 N -0.603 5.603 7 C 0.518 3.482 8 O -0.536 6.536 9 C -0.068 4.068 10 C 0.096 3.904 11 C -0.260 4.260 12 S 0.098 5.902 13 C 0.053 3.947 14 C -0.076 4.076 15 N -0.444 5.444 16 C 0.113 3.887 17 C -0.150 4.150 18 C 0.179 3.821 19 H 0.050 0.950 20 N -0.719 5.719 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.283 1.283 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.176 0.824 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.048 0.952 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 17.912 4.276 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.083 0.917 5 C -0.001 4.001 6 N -0.336 5.336 7 C 0.305 3.695 8 O -0.413 6.413 9 C -0.110 4.110 10 C -0.036 4.036 11 C -0.399 4.399 12 S 0.352 5.648 13 C -0.226 4.226 14 C -0.137 4.137 15 N -0.158 5.158 16 C -0.010 4.010 17 C -0.191 4.191 18 C 0.068 3.932 19 H 0.068 0.932 20 N -0.361 5.361 21 C -0.368 4.368 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.209 1.209 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.194 0.806 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.704 18.293 4.101 22.100 hybrid contribution 1.732 -1.147 0.067 2.078 sum -9.972 17.146 4.168 20.268 Atomic orbital electron populations 1.21851 0.96858 1.00990 1.01339 1.21412 0.94240 0.95779 1.03324 1.21667 0.97354 0.96105 0.97167 0.91735 1.21549 0.98704 0.81706 0.98145 1.48092 1.08557 1.06498 1.70458 1.20133 0.87003 0.85476 0.76917 1.90682 1.14798 1.86344 1.49454 1.20294 0.95910 0.90219 1.04611 1.19632 0.97356 0.95592 0.91056 1.26714 1.05016 1.01025 1.07108 1.83809 1.30886 1.28952 1.21178 1.27043 1.00666 0.93954 1.00961 1.20434 0.95599 1.02965 0.94671 1.66005 1.04675 1.22934 1.22197 1.21742 0.79346 0.99878 1.00023 1.22527 1.01759 0.99354 0.95472 1.20211 0.89749 0.90625 0.92575 0.93214 1.42484 1.19130 1.63906 1.10583 1.19208 0.93655 1.26964 0.96999 0.91294 1.24704 0.98539 1.01504 0.96031 1.69651 1.38146 1.47994 1.02191 0.86247 0.84260 0.79364 0.76620 1.21858 1.21914 1.20875 0.93185 0.93447 0.92779 0.90497 0.92078 0.89741 0.90911 0.87169 0.87414 0.80621 0.89557 0.90286 0.89213 0.89653 0.91341 0.90755 0.93370 0.78061 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.67 37.16 0.36 -1.79 16 2 C -0.11 -1.78 5.19 -26.73 -0.14 -1.92 16 3 C -0.10 -1.69 2.12 -90.72 -0.19 -1.89 16 4 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.12 2.10 5.01 -3.93 -0.02 2.08 16 6 N -0.60 -9.85 2.98 -173.03 -0.52 -10.36 16 7 C 0.52 8.55 7.66 -10.98 -0.08 8.47 16 8 O -0.54 -10.68 14.86 5.56 0.08 -10.60 16 9 C -0.07 -0.86 4.54 -29.03 -0.13 -0.99 16 10 C 0.10 1.30 5.64 -84.23 -0.47 0.83 16 11 C -0.26 -2.83 11.07 29.12 0.32 -2.51 16 12 S 0.10 0.95 23.18 -107.50 -2.49 -1.54 16 13 C 0.05 0.63 7.39 -13.45 -0.10 0.53 16 14 C -0.08 -0.64 10.46 36.01 0.38 -0.26 16 15 N -0.44 -6.68 9.68 -8.05 -0.08 -6.76 16 16 C 0.11 1.74 6.09 -3.71 -0.02 1.71 16 17 C -0.15 -2.39 5.78 -26.61 -0.15 -2.55 16 18 C 0.18 3.28 2.53 -67.89 -0.17 3.11 16 19 H 0.05 0.95 8.08 -51.92 -0.42 0.53 16 20 N -0.72 -16.35 3.72 -53.38 -0.20 -16.55 16 21 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -27.00 13.06 55.49 0.72 -26.28 16 25 Si 0.90 21.69 29.55 -169.99 -5.02 16.66 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.78 6.70 -51.93 -0.35 0.43 16 32 H 0.08 1.45 7.70 -51.93 -0.40 1.05 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.51 5.72 -51.93 -0.30 1.21 16 35 H 0.07 1.41 6.64 -51.93 -0.34 1.07 16 36 H 0.11 1.28 7.94 -51.93 -0.41 0.87 16 37 H 0.11 1.04 7.58 -51.93 -0.39 0.65 16 38 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 43 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.38 9.46 5.95 -40.82 -0.24 9.21 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -32.17 384.39 -9.73 -41.90 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -7.34 Total: 9.60 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -0.68 Total: -1.85 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.07 Total: -59.95 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.49 Total: -1.54 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.17 -9.73 -41.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037975328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.275 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds